Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01280

Experiment: H2 N-free with 10mM Glycine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01270 and MMP_RS01275 are separated by 1 nucleotidesMMP_RS01275 and MMP_RS01280 are separated by 125 nucleotidesMMP_RS01280 and MMP_RS01285 overlap by 1 nucleotidesMMP_RS01285 and MMP_RS01290 are separated by 33 nucleotides MMP_RS01270: MMP_RS01270 - prepilin peptidase, at 239,930 to 240,970 _RS01270 MMP_RS01275: MMP_RS01275 - class III signal peptide-containing protein, at 240,972 to 241,361 _RS01275 MMP_RS01280: MMP_RS01280 - DUF515 domain-containing protein, at 241,487 to 242,635 _RS01280 MMP_RS01285: MMP_RS01285 - hypothetical protein, at 242,635 to 243,528 _RS01285 MMP_RS01290: MMP_RS01290 - class III signal peptide-containing protein, at 243,562 to 243,960 _RS01290 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1at 240.510 kb on + strand, within MMP_RS01270at 240.514 kb on + strand, within MMP_RS01270at 240.566 kb on - strand, within MMP_RS01270at 240.601 kb on + strand, within MMP_RS01270at 240.666 kb on - strand, within MMP_RS01270at 240.683 kb on + strand, within MMP_RS01270at 240.688 kb on + strand, within MMP_RS01270at 240.705 kb on - strand, within MMP_RS01270at 240.724 kb on - strand, within MMP_RS01270at 240.884 kb on + strandat 240.884 kb on + strandat 240.934 kb on + strandat 240.969 kb on + strandat 241.047 kb on + strand, within MMP_RS01275at 241.221 kb on + strand, within MMP_RS01275at 241.232 kb on - strand, within MMP_RS01275at 241.235 kb on + strand, within MMP_RS01275at 241.243 kb on + strand, within MMP_RS01275at 241.244 kb on - strand, within MMP_RS01275at 241.383 kb on + strandat 241.400 kb on - strandat 241.407 kb on - strandat 241.408 kb on + strandat 241.414 kb on + strandat 241.429 kb on - strandat 241.429 kb on - strandat 241.429 kb on - strandat 241.430 kb on + strandat 241.430 kb on + strandat 241.431 kb on - strandat 241.435 kb on - strandat 241.451 kb on - strandat 241.465 kb on + strandat 241.486 kb on - strandat 241.502 kb on - strandat 241.502 kb on - strandat 241.511 kb on + strandat 241.691 kb on + strand, within MMP_RS01280at 241.742 kb on - strand, within MMP_RS01280at 241.743 kb on + strand, within MMP_RS01280at 241.743 kb on + strand, within MMP_RS01280at 241.755 kb on - strand, within MMP_RS01280at 241.822 kb on + strand, within MMP_RS01280at 241.829 kb on - strand, within MMP_RS01280at 241.829 kb on - strand, within MMP_RS01280at 241.832 kb on + strand, within MMP_RS01280at 241.862 kb on + strand, within MMP_RS01280at 241.862 kb on + strand, within MMP_RS01280at 241.866 kb on + strand, within MMP_RS01280at 241.874 kb on - strand, within MMP_RS01280at 242.036 kb on - strand, within MMP_RS01280at 242.042 kb on - strand, within MMP_RS01280at 242.043 kb on + strand, within MMP_RS01280at 242.043 kb on + strand, within MMP_RS01280at 242.067 kb on + strand, within MMP_RS01280at 242.067 kb on + strand, within MMP_RS01280at 242.152 kb on - strand, within MMP_RS01280at 242.230 kb on + strand, within MMP_RS01280at 242.309 kb on - strand, within MMP_RS01280at 242.390 kb on - strand, within MMP_RS01280at 242.446 kb on - strand, within MMP_RS01280at 242.495 kb on + strand, within MMP_RS01280at 242.518 kb on + strand, within MMP_RS01280at 242.547 kb on - strandat 242.547 kb on - strandat 242.548 kb on + strandat 242.606 kb on - strandat 242.630 kb on + strandat 242.652 kb on + strandat 242.656 kb on - strandat 242.656 kb on - strandat 242.721 kb on - strandat 242.722 kb on + strandat 242.734 kb on - strand, within MMP_RS01285at 242.758 kb on + strand, within MMP_RS01285at 242.892 kb on - strand, within MMP_RS01285at 243.008 kb on - strand, within MMP_RS01285at 243.009 kb on + strand, within MMP_RS01285at 243.011 kb on - strand, within MMP_RS01285at 243.015 kb on - strand, within MMP_RS01285at 243.072 kb on + strand, within MMP_RS01285at 243.114 kb on + strand, within MMP_RS01285at 243.114 kb on + strand, within MMP_RS01285at 243.188 kb on - strand, within MMP_RS01285at 243.239 kb on - strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.292 kb on + strand, within MMP_RS01285at 243.393 kb on + strand, within MMP_RS01285at 243.437 kb on + strand, within MMP_RS01285at 243.439 kb on + strandat 243.442 kb on + strandat 243.532 kb on + strandat 243.558 kb on - strandat 243.629 kb on - strand, within MMP_RS01290

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Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine
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240,510 + MMP_RS01270 0.56 +0.9
240,514 + MMP_RS01270 0.56 +0.2
240,566 - MMP_RS01270 0.61 -2.9
240,601 + MMP_RS01270 0.64 +0.3
240,666 - MMP_RS01270 0.71 -0.7
240,683 + MMP_RS01270 0.72 +0.5
240,688 + MMP_RS01270 0.73 +0.5
240,705 - MMP_RS01270 0.74 -0.3
240,724 - MMP_RS01270 0.76 +1.3
240,884 + -0.3
240,884 + +0.1
240,934 + -0.4
240,969 + +1.0
241,047 + MMP_RS01275 0.19 +0.4
241,221 + MMP_RS01275 0.64 -0.0
241,232 - MMP_RS01275 0.67 +0.7
241,235 + MMP_RS01275 0.67 +0.1
241,243 + MMP_RS01275 0.69 +0.3
241,244 - MMP_RS01275 0.70 +0.8
241,383 + +0.7
241,400 - +0.5
241,407 - +1.0
241,408 + +1.1
241,414 + +0.8
241,429 - +0.1
241,429 - +0.8
241,429 - +0.9
241,430 + +1.0
241,430 + -0.7
241,431 - +0.3
241,435 - -0.0
241,451 - +0.5
241,465 + +0.6
241,486 - +0.0
241,502 - +0.9
241,502 - -0.3
241,511 + +1.7
241,691 + MMP_RS01280 0.18 +0.4
241,742 - MMP_RS01280 0.22 +1.4
241,743 + MMP_RS01280 0.22 +0.7
241,743 + MMP_RS01280 0.22 +1.2
241,755 - MMP_RS01280 0.23 +1.1
241,822 + MMP_RS01280 0.29 -0.3
241,829 - MMP_RS01280 0.30 +0.7
241,829 - MMP_RS01280 0.30 -0.7
241,832 + MMP_RS01280 0.30 +0.4
241,862 + MMP_RS01280 0.33 +0.6
241,862 + MMP_RS01280 0.33 +1.3
241,866 + MMP_RS01280 0.33 +0.1
241,874 - MMP_RS01280 0.34 -0.1
242,036 - MMP_RS01280 0.48 +0.4
242,042 - MMP_RS01280 0.48 +0.2
242,043 + MMP_RS01280 0.48 -0.0
242,043 + MMP_RS01280 0.48 +0.4
242,067 + MMP_RS01280 0.50 +1.2
242,067 + MMP_RS01280 0.50 +1.5
242,152 - MMP_RS01280 0.58 +0.4
242,230 + MMP_RS01280 0.65 +1.0
242,309 - MMP_RS01280 0.72 +0.2
242,390 - MMP_RS01280 0.79 +1.1
242,446 - MMP_RS01280 0.83 +0.6
242,495 + MMP_RS01280 0.88 +0.2
242,518 + MMP_RS01280 0.90 +0.0
242,547 - +0.7
242,547 - +0.1
242,548 + +0.9
242,606 - +0.6
242,630 + -0.5
242,652 + +1.0
242,656 - -0.9
242,656 - +0.6
242,721 - +0.1
242,722 + -0.5
242,734 - MMP_RS01285 0.11 +0.8
242,758 + MMP_RS01285 0.14 +0.3
242,892 - MMP_RS01285 0.29 -0.9
243,008 - MMP_RS01285 0.42 -0.5
243,009 + MMP_RS01285 0.42 -0.8
243,011 - MMP_RS01285 0.42 +0.1
243,015 - MMP_RS01285 0.43 +0.6
243,072 + MMP_RS01285 0.49 -0.1
243,114 + MMP_RS01285 0.54 +0.3
243,114 + MMP_RS01285 0.54 -0.3
243,188 - MMP_RS01285 0.62 -0.0
243,239 - MMP_RS01285 0.68 +0.0
243,292 + MMP_RS01285 0.73 +0.0
243,292 + MMP_RS01285 0.73 +0.3
243,292 + MMP_RS01285 0.73 +1.0
243,393 + MMP_RS01285 0.85 -0.2
243,437 + MMP_RS01285 0.90 +0.7
243,439 + +1.3
243,442 + -1.0
243,532 + +0.6
243,558 - -0.2
243,629 - MMP_RS01290 0.17 +1.0

Or see this region's nucleotide sequence