Experiment: H2 N-free with 10mM Glycine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00560 and MMP_RS00565 are separated by 14 nucleotides MMP_RS00565 and MMP_RS00570 are separated by 88 nucleotides MMP_RS00570 and MMP_RS00575 are separated by 118 nucleotides
MMP_RS00560: MMP_RS00560 - cation:proton antiporter, at 109,297 to 110,475
_RS00560
MMP_RS00565: MMP_RS00565 - CBS domain-containing protein, at 110,490 to 110,975
_RS00565
MMP_RS00570: MMP_RS00570 - protein-L-isoaspartate O-methyltransferase, at 111,064 to 111,702
_RS00570
MMP_RS00575: MMP_RS00575 - pyridoxal 5'-phosphate synthase lyase subunit PdxS, at 111,821 to 112,720
_RS00575
Position (kb)
110
111 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 109.552 kb on - strand, within MMP_RS00560 at 109.552 kb on - strand, within MMP_RS00560 at 109.639 kb on - strand, within MMP_RS00560 at 109.639 kb on - strand, within MMP_RS00560 at 109.663 kb on + strand, within MMP_RS00560 at 109.665 kb on - strand, within MMP_RS00560 at 109.673 kb on + strand, within MMP_RS00560 at 109.857 kb on - strand, within MMP_RS00560 at 109.863 kb on - strand, within MMP_RS00560 at 109.863 kb on - strand, within MMP_RS00560 at 109.864 kb on + strand, within MMP_RS00560 at 109.868 kb on + strand, within MMP_RS00560 at 109.894 kb on + strand, within MMP_RS00560 at 110.130 kb on + strand, within MMP_RS00560 at 110.342 kb on + strand, within MMP_RS00560 at 110.401 kb on + strand at 110.425 kb on + strand at 110.466 kb on - strand at 110.466 kb on - strand at 110.640 kb on + strand, within MMP_RS00565 at 110.730 kb on - strand, within MMP_RS00565 at 110.731 kb on + strand, within MMP_RS00565 at 110.741 kb on - strand, within MMP_RS00565 at 110.783 kb on + strand, within MMP_RS00565 at 110.823 kb on - strand, within MMP_RS00565 at 110.882 kb on - strand, within MMP_RS00565 at 110.934 kb on + strand at 110.944 kb on - strand at 111.004 kb on - strand at 111.004 kb on - strand at 111.005 kb on + strand at 111.005 kb on + strand at 111.006 kb on - strand at 111.006 kb on - strand at 111.006 kb on - strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.007 kb on + strand at 111.022 kb on - strand at 111.024 kb on - strand at 111.024 kb on - strand at 111.025 kb on + strand at 111.025 kb on + strand at 111.025 kb on + strand at 111.061 kb on - strand at 111.061 kb on - strand at 111.072 kb on + strand at 111.072 kb on + strand at 111.115 kb on - strand at 111.237 kb on - strand, within MMP_RS00570 at 111.302 kb on - strand, within MMP_RS00570 at 111.700 kb on - strand at 111.786 kb on - strand at 111.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine remove 109,552 - MMP_RS00560 0.22 -1.0 109,552 - MMP_RS00560 0.22 -0.9 109,639 - MMP_RS00560 0.29 +0.7 109,639 - MMP_RS00560 0.29 +0.2 109,663 + MMP_RS00560 0.31 +0.1 109,665 - MMP_RS00560 0.31 -0.8 109,673 + MMP_RS00560 0.32 +0.4 109,857 - MMP_RS00560 0.47 -0.3 109,863 - MMP_RS00560 0.48 +0.1 109,863 - MMP_RS00560 0.48 +0.5 109,864 + MMP_RS00560 0.48 +0.0 109,868 + MMP_RS00560 0.48 -0.0 109,894 + MMP_RS00560 0.51 -0.2 110,130 + MMP_RS00560 0.71 -0.1 110,342 + MMP_RS00560 0.89 +0.4 110,401 + +0.2 110,425 + +0.8 110,466 - +0.5 110,466 - +0.1 110,640 + MMP_RS00565 0.31 +0.5 110,730 - MMP_RS00565 0.49 +1.3 110,731 + MMP_RS00565 0.50 +0.5 110,741 - MMP_RS00565 0.52 -0.5 110,783 + MMP_RS00565 0.60 +0.7 110,823 - MMP_RS00565 0.69 +0.6 110,882 - MMP_RS00565 0.81 +0.2 110,934 + +1.1 110,944 - -0.3 111,004 - +0.6 111,004 - -1.5 111,005 + -0.1 111,005 + -0.3 111,006 - +0.0 111,006 - -0.3 111,006 - +1.8 111,007 + +0.8 111,007 + -0.5 111,007 + +1.2 111,007 + -0.4 111,007 + -0.9 111,022 - +0.5 111,024 - -0.6 111,024 - +1.2 111,025 + -3.7 111,025 + +0.6 111,025 + +0.5 111,061 - -1.0 111,061 - +0.8 111,072 + +0.1 111,072 + +0.9 111,115 - -0.6 111,237 - MMP_RS00570 0.27 +0.1 111,302 - MMP_RS00570 0.37 +0.7 111,700 - +0.3 111,786 - -3.4 111,789 - -1.5
Or see this region's nucleotide sequence