Strain Fitness in Pantoea sp. MT58 around IAI47_19440

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_19435 and IAI47_19440 are separated by 53 nucleotidesIAI47_19440 and IAI47_19445 are separated by 97 nucleotides IAI47_19435: IAI47_19435 - 23S rRNA pseudouridine(2604) synthase RluF, at 116,018 to 116,896 _19435 IAI47_19440: IAI47_19440 - SDR family oxidoreductase, at 116,950 to 118,008 _19440 IAI47_19445: IAI47_19445 - LysR family transcriptional regulator, at 118,106 to 119,008 _19445 Position (kb) 116 117 118 119Strain fitness (log2 ratio) -2 -1 0 1 2 3at 115.992 kb on + strandat 115.992 kb on + strandat 115.992 kb on + strandat 115.992 kb on + strandat 115.992 kb on + strandat 115.992 kb on + strandat 115.993 kb on - strandat 115.993 kb on - strandat 115.993 kb on - strandat 115.993 kb on - strandat 115.994 kb on + strandat 115.994 kb on + strandat 115.994 kb on + strandat 115.994 kb on + strandat 115.995 kb on - strandat 115.995 kb on - strandat 115.995 kb on - strandat 115.995 kb on - strandat 116.047 kb on + strandat 116.047 kb on + strandat 116.047 kb on + strandat 116.052 kb on - strandat 116.052 kb on - strandat 116.052 kb on - strandat 116.096 kb on + strandat 116.096 kb on + strandat 116.098 kb on + strandat 116.098 kb on + strandat 116.099 kb on - strandat 116.155 kb on - strand, within IAI47_19435at 116.281 kb on + strand, within IAI47_19435at 116.394 kb on + strand, within IAI47_19435at 116.394 kb on + strand, within IAI47_19435at 116.395 kb on - strand, within IAI47_19435at 116.395 kb on - strand, within IAI47_19435at 116.426 kb on + strand, within IAI47_19435at 116.465 kb on - strand, within IAI47_19435at 116.465 kb on - strand, within IAI47_19435at 116.465 kb on - strand, within IAI47_19435at 116.554 kb on + strand, within IAI47_19435at 116.590 kb on + strand, within IAI47_19435at 116.590 kb on + strand, within IAI47_19435at 116.590 kb on + strand, within IAI47_19435at 116.590 kb on + strand, within IAI47_19435at 116.591 kb on - strand, within IAI47_19435at 116.591 kb on - strand, within IAI47_19435at 116.596 kb on + strand, within IAI47_19435at 116.596 kb on + strand, within IAI47_19435at 116.596 kb on + strandat 116.596 kb on + strand, within IAI47_19435at 116.596 kb on + strand, within IAI47_19435at 116.597 kb on - strand, within IAI47_19435at 116.706 kb on + strand, within IAI47_19435at 116.706 kb on + strand, within IAI47_19435at 116.707 kb on - strand, within IAI47_19435at 116.707 kb on - strand, within IAI47_19435at 116.707 kb on - strand, within IAI47_19435at 116.716 kb on + strand, within IAI47_19435at 116.717 kb on - strand, within IAI47_19435at 116.795 kb on - strand, within IAI47_19435at 116.878 kb on + strandat 116.878 kb on + strandat 116.878 kb on + strandat 116.879 kb on - strandat 116.879 kb on - strandat 116.921 kb on - strandat 116.940 kb on + strandat 116.949 kb on - strandat 117.024 kb on + strandat 117.068 kb on + strand, within IAI47_19440at 117.068 kb on + strand, within IAI47_19440at 117.068 kb on + strand, within IAI47_19440at 117.141 kb on + strand, within IAI47_19440at 117.142 kb on - strand, within IAI47_19440at 117.168 kb on + strand, within IAI47_19440at 117.169 kb on - strand, within IAI47_19440at 117.173 kb on + strand, within IAI47_19440at 117.173 kb on + strand, within IAI47_19440at 117.285 kb on + strand, within IAI47_19440at 117.285 kb on + strand, within IAI47_19440at 117.285 kb on + strand, within IAI47_19440at 117.286 kb on - strand, within IAI47_19440at 117.286 kb on - strand, within IAI47_19440at 117.288 kb on + strand, within IAI47_19440at 117.375 kb on + strand, within IAI47_19440at 117.375 kb on + strand, within IAI47_19440at 117.375 kb on + strand, within IAI47_19440at 117.376 kb on - strand, within IAI47_19440at 117.410 kb on - strand, within IAI47_19440at 117.410 kb on - strand, within IAI47_19440at 117.410 kb on - strand, within IAI47_19440at 117.410 kb on - strand, within IAI47_19440at 117.410 kb on - strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.443 kb on + strand, within IAI47_19440at 117.444 kb on - strand, within IAI47_19440at 117.444 kb on - strand, within IAI47_19440at 117.444 kb on - strand, within IAI47_19440at 117.444 kb on - strand, within IAI47_19440at 117.534 kb on + strand, within IAI47_19440at 117.624 kb on + strand, within IAI47_19440at 117.647 kb on + strand, within IAI47_19440at 117.647 kb on + strand, within IAI47_19440at 117.648 kb on - strand, within IAI47_19440at 117.648 kb on - strand, within IAI47_19440at 117.648 kb on - strand, within IAI47_19440at 117.656 kb on + strand, within IAI47_19440at 117.656 kb on + strand, within IAI47_19440at 117.657 kb on - strand, within IAI47_19440at 117.973 kb on + strandat 117.974 kb on - strandat 117.974 kb on - strandat 118.023 kb on + strandat 118.023 kb on + strandat 118.024 kb on - strandat 118.063 kb on + strandat 118.063 kb on + strandat 118.064 kb on - strandat 118.064 kb on - strandat 118.082 kb on - strandat 118.089 kb on - strandat 118.104 kb on - strandat 118.147 kb on - strandat 118.246 kb on - strand, within IAI47_19445at 118.246 kb on - strand, within IAI47_19445at 118.254 kb on + strand, within IAI47_19445at 118.254 kb on + strand, within IAI47_19445at 118.255 kb on - strand, within IAI47_19445at 118.255 kb on - strand, within IAI47_19445at 118.301 kb on + strand, within IAI47_19445at 118.301 kb on + strand, within IAI47_19445at 118.301 kb on + strand, within IAI47_19445at 118.301 kb on + strand, within IAI47_19445at 118.301 kb on + strand, within IAI47_19445at 118.302 kb on - strand, within IAI47_19445at 118.302 kb on - strand, within IAI47_19445at 118.302 kb on - strand, within IAI47_19445at 118.302 kb on - strand, within IAI47_19445at 118.356 kb on + strand, within IAI47_19445at 118.356 kb on + strand, within IAI47_19445at 118.393 kb on + strand, within IAI47_19445at 118.393 kb on + strand, within IAI47_19445at 118.394 kb on - strand, within IAI47_19445at 118.477 kb on + strand, within IAI47_19445at 118.596 kb on + strand, within IAI47_19445at 118.596 kb on + strand, within IAI47_19445at 118.656 kb on + strand, within IAI47_19445at 118.656 kb on + strand, within IAI47_19445at 118.656 kb on + strand, within IAI47_19445at 118.657 kb on - strand, within IAI47_19445at 118.674 kb on + strand, within IAI47_19445at 118.674 kb on + strand, within IAI47_19445at 118.674 kb on + strand, within IAI47_19445at 118.674 kb on + strand, within IAI47_19445at 118.674 kb on + strand, within IAI47_19445at 118.674 kb on + strand, within IAI47_19445at 118.675 kb on - strand, within IAI47_19445at 118.675 kb on - strand, within IAI47_19445at 118.675 kb on - strand, within IAI47_19445at 118.681 kb on + strand, within IAI47_19445at 118.688 kb on - strand, within IAI47_19445at 118.765 kb on + strand, within IAI47_19445at 118.765 kb on + strand, within IAI47_19445at 118.765 kb on + strand, within IAI47_19445at 118.766 kb on - strand, within IAI47_19445at 118.766 kb on - strand, within IAI47_19445at 118.821 kb on + strand, within IAI47_19445at 118.822 kb on - strand, within IAI47_19445at 118.876 kb on - strand, within IAI47_19445at 118.902 kb on - strand, within IAI47_19445at 118.907 kb on + strand, within IAI47_19445at 118.907 kb on + strand, within IAI47_19445at 118.908 kb on - strand, within IAI47_19445at 118.908 kb on - strand, within IAI47_19445at 118.934 kb on - strandat 118.934 kb on - strandat 118.942 kb on + strandat 118.943 kb on - strandat 118.943 kb on - strandat 118.951 kb on + strandat 118.951 kb on + strandat 118.951 kb on + strandat 118.952 kb on - strandat 118.952 kb on - strandat 118.981 kb on - strandat 118.981 kb on - strandat 119.006 kb on + strandat 119.006 kb on + strandat 119.007 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
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115,992 + +1.8
115,992 + -0.1
115,992 + -0.2
115,992 + -1.9
115,992 + +0.9
115,992 + +1.1
115,993 - +0.0
115,993 - -2.2
115,993 - +0.4
115,993 - -1.9
115,994 + -0.1
115,994 + +2.0
115,994 + +3.0
115,994 + +0.1
115,995 - +1.0
115,995 - +0.3
115,995 - +0.9
115,995 - -0.2
116,047 + +1.0
116,047 + +0.4
116,047 + -1.1
116,052 - -0.4
116,052 - +1.4
116,052 - +0.2
116,096 + -0.7
116,096 + +0.8
116,098 + +0.7
116,098 + +1.0
116,099 - +2.0
116,155 - IAI47_19435 0.16 +0.7
116,281 + IAI47_19435 0.30 +0.9
116,394 + IAI47_19435 0.43 +0.6
116,394 + IAI47_19435 0.43 -0.2
116,395 - IAI47_19435 0.43 -1.5
116,395 - IAI47_19435 0.43 -1.5
116,426 + IAI47_19435 0.46 -0.1
116,465 - IAI47_19435 0.51 -1.1
116,465 - IAI47_19435 0.51 -0.4
116,465 - IAI47_19435 0.51 -2.1
116,554 + IAI47_19435 0.61 -0.4
116,590 + IAI47_19435 0.65 +1.4
116,590 + IAI47_19435 0.65 -0.9
116,590 + IAI47_19435 0.65 +1.3
116,590 + IAI47_19435 0.65 +0.1
116,591 - IAI47_19435 0.65 -0.5
116,591 - IAI47_19435 0.65 -0.5
116,596 + IAI47_19435 0.66 +0.7
116,596 + IAI47_19435 0.66 +0.5
116,596 + +2.0
116,596 + IAI47_19435 0.66 +0.5
116,596 + IAI47_19435 0.66 +0.5
116,597 - IAI47_19435 0.66 -0.2
116,706 + IAI47_19435 0.78 -1.1
116,706 + IAI47_19435 0.78 -0.1
116,707 - IAI47_19435 0.78 -1.1
116,707 - IAI47_19435 0.78 +1.0
116,707 - IAI47_19435 0.78 +1.0
116,716 + IAI47_19435 0.79 +1.8
116,717 - IAI47_19435 0.80 -0.0
116,795 - IAI47_19435 0.88 +1.3
116,878 + +1.5
116,878 + +0.7
116,878 + -0.9
116,879 - -1.5
116,879 - +0.8
116,921 - -0.5
116,940 + +1.6
116,949 - -0.1
117,024 + -0.5
117,068 + IAI47_19440 0.11 -1.8
117,068 + IAI47_19440 0.11 +1.6
117,068 + IAI47_19440 0.11 +0.8
117,141 + IAI47_19440 0.18 +0.2
117,142 - IAI47_19440 0.18 +0.1
117,168 + IAI47_19440 0.21 -0.5
117,169 - IAI47_19440 0.21 +1.7
117,173 + IAI47_19440 0.21 -1.0
117,173 + IAI47_19440 0.21 -0.3
117,285 + IAI47_19440 0.32 +1.2
117,285 + IAI47_19440 0.32 -0.1
117,285 + IAI47_19440 0.32 -1.1
117,286 - IAI47_19440 0.32 +1.5
117,286 - IAI47_19440 0.32 -0.7
117,288 + IAI47_19440 0.32 +0.6
117,375 + IAI47_19440 0.40 +0.1
117,375 + IAI47_19440 0.40 +1.4
117,375 + IAI47_19440 0.40 +0.1
117,376 - IAI47_19440 0.40 -0.3
117,410 - IAI47_19440 0.43 -0.2
117,410 - IAI47_19440 0.43 +0.5
117,410 - IAI47_19440 0.43 +0.2
117,410 - IAI47_19440 0.43 -1.1
117,410 - IAI47_19440 0.43 +0.6
117,443 + IAI47_19440 0.47 -0.1
117,443 + IAI47_19440 0.47 +0.4
117,443 + IAI47_19440 0.47 +0.1
117,443 + IAI47_19440 0.47 +0.7
117,443 + IAI47_19440 0.47 -1.4
117,443 + IAI47_19440 0.47 +0.6
117,443 + IAI47_19440 0.47 +0.1
117,443 + IAI47_19440 0.47 -0.5
117,443 + IAI47_19440 0.47 -1.3
117,444 - IAI47_19440 0.47 +0.8
117,444 - IAI47_19440 0.47 -1.3
117,444 - IAI47_19440 0.47 +0.0
117,444 - IAI47_19440 0.47 -0.1
117,534 + IAI47_19440 0.55 -0.7
117,624 + IAI47_19440 0.64 +0.1
117,647 + IAI47_19440 0.66 -0.3
117,647 + IAI47_19440 0.66 +0.9
117,648 - IAI47_19440 0.66 -0.6
117,648 - IAI47_19440 0.66 -0.1
117,648 - IAI47_19440 0.66 -0.5
117,656 + IAI47_19440 0.67 +0.2
117,656 + IAI47_19440 0.67 -1.5
117,657 - IAI47_19440 0.67 -0.3
117,973 + +0.9
117,974 - +1.2
117,974 - -0.7
118,023 + +1.0
118,023 + -1.0
118,024 - -0.1
118,063 + +1.4
118,063 + +0.6
118,064 - -0.7
118,064 - +0.2
118,082 - +0.3
118,089 - -0.5
118,104 - -0.2
118,147 - +1.9
118,246 - IAI47_19445 0.16 -0.4
118,246 - IAI47_19445 0.16 +0.1
118,254 + IAI47_19445 0.16 +2.3
118,254 + IAI47_19445 0.16 +0.6
118,255 - IAI47_19445 0.17 -0.8
118,255 - IAI47_19445 0.17 +0.2
118,301 + IAI47_19445 0.22 +1.1
118,301 + IAI47_19445 0.22 +1.9
118,301 + IAI47_19445 0.22 +1.0
118,301 + IAI47_19445 0.22 +0.6
118,301 + IAI47_19445 0.22 +0.3
118,302 - IAI47_19445 0.22 +1.0
118,302 - IAI47_19445 0.22 +2.6
118,302 - IAI47_19445 0.22 +0.3
118,302 - IAI47_19445 0.22 +0.3
118,356 + IAI47_19445 0.28 -0.3
118,356 + IAI47_19445 0.28 +0.9
118,393 + IAI47_19445 0.32 +1.2
118,393 + IAI47_19445 0.32 -0.3
118,394 - IAI47_19445 0.32 -0.9
118,477 + IAI47_19445 0.41 -0.9
118,596 + IAI47_19445 0.54 +0.9
118,596 + IAI47_19445 0.54 -0.4
118,656 + IAI47_19445 0.61 +1.0
118,656 + IAI47_19445 0.61 +1.0
118,656 + IAI47_19445 0.61 -2.4
118,657 - IAI47_19445 0.61 +0.4
118,674 + IAI47_19445 0.63 +1.1
118,674 + IAI47_19445 0.63 +0.2
118,674 + IAI47_19445 0.63 +1.3
118,674 + IAI47_19445 0.63 +0.8
118,674 + IAI47_19445 0.63 +1.1
118,674 + IAI47_19445 0.63 +0.3
118,675 - IAI47_19445 0.63 +0.5
118,675 - IAI47_19445 0.63 -0.5
118,675 - IAI47_19445 0.63 -1.1
118,681 + IAI47_19445 0.64 +3.4
118,688 - IAI47_19445 0.64 +0.1
118,765 + IAI47_19445 0.73 +1.0
118,765 + IAI47_19445 0.73 +2.0
118,765 + IAI47_19445 0.73 +2.3
118,766 - IAI47_19445 0.73 -2.2
118,766 - IAI47_19445 0.73 -1.0
118,821 + IAI47_19445 0.79 -0.2
118,822 - IAI47_19445 0.79 +1.6
118,876 - IAI47_19445 0.85 -0.6
118,902 - IAI47_19445 0.88 -0.6
118,907 + IAI47_19445 0.89 +0.1
118,907 + IAI47_19445 0.89 -0.3
118,908 - IAI47_19445 0.89 -0.9
118,908 - IAI47_19445 0.89 -0.4
118,934 - -1.0
118,934 - +1.5
118,942 + +1.0
118,943 - +0.2
118,943 - -0.0
118,951 + -0.4
118,951 + +0.0
118,951 + +1.0
118,952 - -0.4
118,952 - -1.8
118,981 - -1.4
118,981 - -0.7
119,006 + -0.4
119,006 + -0.3
119,007 - -0.5

Or see this region's nucleotide sequence