Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09710 and PGA1_c09720 are separated by 28 nucleotides PGA1_c09720 and PGA1_c09730 are separated by 113 nucleotides
PGA1_c09710: PGA1_c09710 - putative outer membrane assembly lipoprotein, at 997,345 to 998,193
_c09710
PGA1_c09720: PGA1_c09720 - DNA repair protein RecN, at 998,222 to 999,868
_c09720
PGA1_c09730: PGA1_c09730 - putative voltage-gated CIC-type chloride channel, at 999,982 to 1,001,673
_c09730
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 998.093 kb on + strand, within PGA1_c09710 at 998.093 kb on + strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.101 kb on - strand, within PGA1_c09710 at 998.187 kb on - strand at 998.232 kb on + strand at 998.257 kb on - strand at 998.296 kb on - strand at 998.394 kb on + strand, within PGA1_c09720 at 998.456 kb on + strand, within PGA1_c09720 at 998.556 kb on + strand, within PGA1_c09720 at 998.643 kb on + strand, within PGA1_c09720 at 998.677 kb on + strand, within PGA1_c09720 at 998.897 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.942 kb on + strand, within PGA1_c09720 at 998.950 kb on - strand, within PGA1_c09720 at 998.964 kb on + strand, within PGA1_c09720 at 999.030 kb on - strand, within PGA1_c09720 at 999.096 kb on - strand, within PGA1_c09720 at 999.342 kb on + strand, within PGA1_c09720 at 999.419 kb on + strand, within PGA1_c09720 at 999.427 kb on + strand, within PGA1_c09720 at 999.509 kb on + strand, within PGA1_c09720 at 999.760 kb on + strand at 999.765 kb on + strand at 999.765 kb on + strand at 999.773 kb on - strand at 999.810 kb on - strand at 999.825 kb on + strand at 999.825 kb on + strand at 999.833 kb on - strand at 999.833 kb on - strand at 999.957 kb on + strand at 1000.034 kb on - strand at 1000.095 kb on + strand at 1000.148 kb on - strand at 1000.211 kb on + strand, within PGA1_c09730 at 1000.229 kb on - strand, within PGA1_c09730 at 1000.229 kb on - strand, within PGA1_c09730 at 1000.234 kb on - strand, within PGA1_c09730 at 1000.236 kb on - strand, within PGA1_c09730 at 1000.290 kb on - strand, within PGA1_c09730 at 1000.301 kb on - strand, within PGA1_c09730 at 1000.379 kb on + strand, within PGA1_c09730 at 1000.421 kb on - strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.424 kb on + strand, within PGA1_c09730 at 1000.522 kb on + strand, within PGA1_c09730 at 1000.522 kb on - strand, within PGA1_c09730 at 1000.530 kb on - strand, within PGA1_c09730 at 1000.629 kb on - strand, within PGA1_c09730 at 1000.629 kb on - strand, within PGA1_c09730 at 1000.708 kb on - strand, within PGA1_c09730 at 1000.726 kb on + strand, within PGA1_c09730 at 1000.754 kb on + strand, within PGA1_c09730 at 1000.787 kb on + strand, within PGA1_c09730 at 1000.792 kb on + strand, within PGA1_c09730 at 1000.800 kb on - strand, within PGA1_c09730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 998,093 + PGA1_c09710 0.88 -1.9 998,093 + PGA1_c09710 0.88 -1.6 998,101 - PGA1_c09710 0.89 -0.9 998,101 - PGA1_c09710 0.89 -2.4 998,187 - -1.3 998,232 + +1.9 998,257 - -1.5 998,296 - +1.0 998,394 + PGA1_c09720 0.10 +1.2 998,456 + PGA1_c09720 0.14 +3.4 998,556 + PGA1_c09720 0.20 -1.7 998,643 + PGA1_c09720 0.26 -2.3 998,677 + PGA1_c09720 0.28 +2.2 998,897 + PGA1_c09720 0.41 +0.3 998,942 + PGA1_c09720 0.44 +1.3 998,942 + PGA1_c09720 0.44 -2.5 998,950 - PGA1_c09720 0.44 -1.2 998,964 + PGA1_c09720 0.45 +2.7 999,030 - PGA1_c09720 0.49 -1.2 999,096 - PGA1_c09720 0.53 +2.0 999,342 + PGA1_c09720 0.68 +2.3 999,419 + PGA1_c09720 0.73 +0.8 999,427 + PGA1_c09720 0.73 -0.4 999,509 + PGA1_c09720 0.78 +2.1 999,760 + -1.0 999,765 + +0.3 999,765 + -2.2 999,773 - -1.0 999,810 - -3.1 999,825 + +1.6 999,825 + -1.2 999,833 - +2.3 999,833 - -1.5 999,957 + +0.0 1,000,034 - +1.0 1,000,095 + +1.5 1,000,148 - -3.5 1,000,211 + PGA1_c09730 0.14 -1.4 1,000,229 - PGA1_c09730 0.15 +0.7 1,000,229 - PGA1_c09730 0.15 -0.4 1,000,234 - PGA1_c09730 0.15 -2.3 1,000,236 - PGA1_c09730 0.15 +0.6 1,000,290 - PGA1_c09730 0.18 -1.2 1,000,301 - PGA1_c09730 0.19 -1.3 1,000,379 + PGA1_c09730 0.23 -1.2 1,000,421 - PGA1_c09730 0.26 +1.5 1,000,424 + PGA1_c09730 0.26 -0.2 1,000,424 + PGA1_c09730 0.26 +2.0 1,000,424 + PGA1_c09730 0.26 -1.9 1,000,424 + PGA1_c09730 0.26 -1.9 1,000,522 + PGA1_c09730 0.32 +0.5 1,000,522 - PGA1_c09730 0.32 -0.4 1,000,530 - PGA1_c09730 0.32 -2.0 1,000,629 - PGA1_c09730 0.38 -0.4 1,000,629 - PGA1_c09730 0.38 -2.8 1,000,708 - PGA1_c09730 0.43 +1.0 1,000,726 + PGA1_c09730 0.44 +1.4 1,000,754 + PGA1_c09730 0.46 -2.8 1,000,787 + PGA1_c09730 0.48 -1.7 1,000,792 + PGA1_c09730 0.48 -1.2 1,000,800 - PGA1_c09730 0.48 +2.4
Or see this region's nucleotide sequence