Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08890 and PGA1_c08900 are separated by 96 nucleotides PGA1_c08900 and PGA1_c08910 are separated by 245 nucleotides
PGA1_c08890: PGA1_c08890 - putative capsule polysaccharide export outer membrane protein, at 918,319 to 919,455
_c08890
PGA1_c08900: PGA1_c08900 - putative capsule polysaccharide export protein KpsS, at 919,552 to 920,844
_c08900
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
Position (kb)
919
920
921 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 918.607 kb on + strand, within PGA1_c08890 at 918.610 kb on - strand, within PGA1_c08890 at 918.699 kb on + strand, within PGA1_c08890 at 918.712 kb on + strand, within PGA1_c08890 at 918.765 kb on - strand, within PGA1_c08890 at 919.092 kb on + strand, within PGA1_c08890 at 919.095 kb on - strand, within PGA1_c08890 at 919.100 kb on - strand, within PGA1_c08890 at 919.194 kb on - strand, within PGA1_c08890 at 919.220 kb on - strand, within PGA1_c08890 at 919.343 kb on + strand at 919.348 kb on + strand at 919.351 kb on - strand at 919.380 kb on + strand at 919.433 kb on + strand at 919.447 kb on + strand at 919.493 kb on + strand at 919.500 kb on + strand at 919.505 kb on + strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.513 kb on - strand at 919.592 kb on + strand at 919.685 kb on + strand, within PGA1_c08900 at 919.703 kb on - strand, within PGA1_c08900 at 919.713 kb on - strand, within PGA1_c08900 at 919.737 kb on - strand, within PGA1_c08900 at 919.815 kb on - strand, within PGA1_c08900 at 919.950 kb on + strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 919.958 kb on - strand, within PGA1_c08900 at 920.051 kb on + strand, within PGA1_c08900 at 920.054 kb on - strand, within PGA1_c08900 at 920.110 kb on + strand, within PGA1_c08900 at 920.112 kb on - strand, within PGA1_c08900 at 920.121 kb on + strand, within PGA1_c08900 at 920.129 kb on - strand, within PGA1_c08900 at 920.306 kb on - strand, within PGA1_c08900 at 920.336 kb on - strand, within PGA1_c08900 at 920.369 kb on - strand, within PGA1_c08900 at 920.374 kb on - strand, within PGA1_c08900 at 920.380 kb on - strand, within PGA1_c08900 at 920.540 kb on - strand, within PGA1_c08900 at 920.562 kb on - strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.575 kb on + strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.583 kb on - strand, within PGA1_c08900 at 920.611 kb on + strand, within PGA1_c08900 at 920.632 kb on - strand, within PGA1_c08900 at 920.651 kb on - strand, within PGA1_c08900 at 920.653 kb on + strand, within PGA1_c08900 at 920.656 kb on - strand, within PGA1_c08900 at 920.661 kb on - strand, within PGA1_c08900 at 920.709 kb on + strand, within PGA1_c08900 at 920.731 kb on + strand at 920.766 kb on + strand at 920.784 kb on - strand at 920.790 kb on + strand at 920.823 kb on + strand at 920.875 kb on + strand at 920.886 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.914 kb on + strand at 920.919 kb on + strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.922 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.927 kb on - strand at 920.942 kb on + strand at 920.945 kb on - strand at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 918,607 + PGA1_c08890 0.25 +0.0 918,610 - PGA1_c08890 0.26 +2.9 918,699 + PGA1_c08890 0.33 -0.5 918,712 + PGA1_c08890 0.35 -0.1 918,765 - PGA1_c08890 0.39 +2.1 919,092 + PGA1_c08890 0.68 -1.3 919,095 - PGA1_c08890 0.68 +3.3 919,100 - PGA1_c08890 0.69 +3.0 919,194 - PGA1_c08890 0.77 -1.6 919,220 - PGA1_c08890 0.79 +3.9 919,343 + -0.1 919,348 + +1.9 919,351 - +3.8 919,380 + +3.4 919,433 + -1.6 919,447 + +2.4 919,493 + -1.2 919,500 + -0.3 919,505 + -0.8 919,513 - -2.5 919,513 - -0.8 919,513 - +2.0 919,513 - +3.1 919,513 - -1.2 919,592 + -2.3 919,685 + PGA1_c08900 0.10 +1.5 919,703 - PGA1_c08900 0.12 +1.2 919,713 - PGA1_c08900 0.12 +3.5 919,737 - PGA1_c08900 0.14 -0.5 919,815 - PGA1_c08900 0.20 +2.2 919,950 + PGA1_c08900 0.31 -1.9 919,958 - PGA1_c08900 0.31 -0.7 919,958 - PGA1_c08900 0.31 +2.5 920,051 + PGA1_c08900 0.39 -3.4 920,054 - PGA1_c08900 0.39 +1.2 920,110 + PGA1_c08900 0.43 +4.3 920,112 - PGA1_c08900 0.43 +3.2 920,121 + PGA1_c08900 0.44 +0.8 920,129 - PGA1_c08900 0.45 +1.2 920,306 - PGA1_c08900 0.58 +0.3 920,336 - PGA1_c08900 0.61 -1.0 920,369 - PGA1_c08900 0.63 -1.0 920,374 - PGA1_c08900 0.64 +0.4 920,380 - PGA1_c08900 0.64 -1.9 920,540 - PGA1_c08900 0.76 +2.2 920,562 - PGA1_c08900 0.78 -1.6 920,575 + PGA1_c08900 0.79 -1.4 920,575 + PGA1_c08900 0.79 -1.6 920,583 - PGA1_c08900 0.80 +1.5 920,583 - PGA1_c08900 0.80 -1.3 920,611 + PGA1_c08900 0.82 +3.7 920,632 - PGA1_c08900 0.84 -2.1 920,651 - PGA1_c08900 0.85 +2.4 920,653 + PGA1_c08900 0.85 -1.1 920,656 - PGA1_c08900 0.85 -0.7 920,661 - PGA1_c08900 0.86 -1.4 920,709 + PGA1_c08900 0.89 +0.3 920,731 + +1.8 920,766 + -1.2 920,784 - +2.0 920,790 + +3.1 920,823 + +0.2 920,875 + +1.7 920,886 + +3.1 920,914 + -0.1 920,914 + -2.3 920,914 + -2.4 920,919 + -0.2 920,922 - +1.0 920,922 - -2.6 920,922 - +0.5 920,927 - -2.4 920,927 - -2.8 920,927 - -1.7 920,942 + -1.2 920,945 - +1.9 921,663 - +1.1 921,708 + -2.6 921,708 + +2.5 921,750 + -0.6 921,760 - -2.7 921,839 - +1.2
Or see this region's nucleotide sequence