Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08760 and PGA1_c08770 overlap by 8 nucleotides PGA1_c08770 and PGA1_c08780 are separated by 38 nucleotides PGA1_c08780 and PGA1_c08790 are separated by 1 nucleotides
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
PGA1_c08770: PGA1_c08770 - putative sarcosine oxidase, subunit gamma, at 906,296 to 906,841
_c08770
PGA1_c08780: PGA1_c08780 - hypothetical protein, at 906,880 to 907,218
_c08780
PGA1_c08790: PGA1_c08790 - DNA primase DnaG, at 907,220 to 909,469
_c08790
Position (kb) 906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 905.299 kb on + strand, within PGA1_c08760 at 905.318 kb on - strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.382 kb on + strand, within PGA1_c08760 at 905.390 kb on - strand, within PGA1_c08760 at 905.390 kb on - strand, within PGA1_c08760 at 905.448 kb on - strand, within PGA1_c08760 at 905.453 kb on + strand, within PGA1_c08760 at 905.484 kb on + strand, within PGA1_c08760 at 905.507 kb on + strand, within PGA1_c08760 at 905.521 kb on + strand, within PGA1_c08760 at 905.620 kb on - strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.631 kb on + strand, within PGA1_c08760 at 905.639 kb on - strand, within PGA1_c08760 at 905.639 kb on - strand, within PGA1_c08760 at 905.711 kb on - strand, within PGA1_c08760 at 905.753 kb on + strand, within PGA1_c08760 at 905.814 kb on + strand, within PGA1_c08760 at 905.821 kb on + strand, within PGA1_c08760 at 905.821 kb on + strand, within PGA1_c08760 at 905.829 kb on - strand, within PGA1_c08760 at 905.843 kb on + strand, within PGA1_c08760 at 905.843 kb on + strand, within PGA1_c08760 at 905.931 kb on - strand, within PGA1_c08760 at 905.953 kb on + strand, within PGA1_c08760 at 905.957 kb on + strand, within PGA1_c08760 at 905.958 kb on + strand, within PGA1_c08760 at 905.961 kb on - strand, within PGA1_c08760 at 906.035 kb on - strand at 906.059 kb on - strand at 906.109 kb on + strand at 906.140 kb on + strand at 906.172 kb on - strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.174 kb on + strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.182 kb on - strand at 906.194 kb on + strand at 906.219 kb on + strand at 906.223 kb on - strand at 906.225 kb on - strand at 906.240 kb on - strand at 906.269 kb on + strand at 906.436 kb on + strand, within PGA1_c08770 at 906.452 kb on + strand, within PGA1_c08770 at 906.522 kb on + strand, within PGA1_c08770 at 906.530 kb on - strand, within PGA1_c08770 at 906.551 kb on + strand, within PGA1_c08770 at 906.555 kb on - strand, within PGA1_c08770 at 906.570 kb on + strand, within PGA1_c08770 at 906.613 kb on + strand, within PGA1_c08770 at 906.623 kb on + strand, within PGA1_c08770 at 906.630 kb on + strand, within PGA1_c08770 at 906.679 kb on + strand, within PGA1_c08770 at 906.688 kb on + strand, within PGA1_c08770 at 906.886 kb on - strand at 906.887 kb on + strand at 906.969 kb on + strand, within PGA1_c08780 at 907.060 kb on + strand, within PGA1_c08780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 905,299 + PGA1_c08760 0.66 +1.3 905,318 - PGA1_c08760 0.66 -1.8 905,382 + PGA1_c08760 0.68 +0.8 905,382 + PGA1_c08760 0.68 +2.4 905,382 + PGA1_c08760 0.68 +2.6 905,382 + PGA1_c08760 0.68 +1.2 905,382 + PGA1_c08760 0.68 +2.0 905,382 + PGA1_c08760 0.68 +1.0 905,390 - PGA1_c08760 0.69 -1.7 905,390 - PGA1_c08760 0.69 +0.9 905,448 - PGA1_c08760 0.71 +1.8 905,453 + PGA1_c08760 0.71 -1.7 905,484 + PGA1_c08760 0.72 -3.0 905,507 + PGA1_c08760 0.73 -0.7 905,521 + PGA1_c08760 0.73 +2.5 905,620 - PGA1_c08760 0.77 -1.7 905,631 + PGA1_c08760 0.77 +0.1 905,631 + PGA1_c08760 0.77 -2.7 905,631 + PGA1_c08760 0.77 -1.2 905,631 + PGA1_c08760 0.77 -1.0 905,639 - PGA1_c08760 0.77 -3.2 905,639 - PGA1_c08760 0.77 +2.1 905,711 - PGA1_c08760 0.80 -2.3 905,753 + PGA1_c08760 0.81 -2.4 905,814 + PGA1_c08760 0.83 -0.4 905,821 + PGA1_c08760 0.83 -2.0 905,821 + PGA1_c08760 0.83 +3.3 905,829 - PGA1_c08760 0.84 -1.7 905,843 + PGA1_c08760 0.84 +2.1 905,843 + PGA1_c08760 0.84 +2.2 905,931 - PGA1_c08760 0.87 -0.4 905,953 + PGA1_c08760 0.88 +2.5 905,957 + PGA1_c08760 0.88 +2.6 905,958 + PGA1_c08760 0.88 +1.7 905,961 - PGA1_c08760 0.88 -0.9 906,035 - -0.9 906,059 - -2.0 906,109 + +1.8 906,140 + -0.6 906,172 - -1.2 906,174 + -1.0 906,174 + +0.1 906,174 + -1.3 906,174 + +1.4 906,174 + +3.3 906,174 + +3.1 906,174 + -1.5 906,174 + -1.2 906,182 - +2.0 906,182 - -0.5 906,182 - -3.1 906,182 - +0.9 906,182 - +1.2 906,182 - -0.9 906,182 - -2.1 906,182 - -1.5 906,182 - -1.1 906,194 + +0.1 906,219 + -2.3 906,223 - +0.5 906,225 - -2.8 906,240 - +0.5 906,269 + -1.1 906,436 + PGA1_c08770 0.26 -3.1 906,452 + PGA1_c08770 0.29 -1.7 906,522 + PGA1_c08770 0.41 -2.4 906,530 - PGA1_c08770 0.43 -1.5 906,551 + PGA1_c08770 0.47 +1.2 906,555 - PGA1_c08770 0.47 +0.9 906,570 + PGA1_c08770 0.50 -0.9 906,613 + PGA1_c08770 0.58 -0.3 906,623 + PGA1_c08770 0.60 -2.4 906,630 + PGA1_c08770 0.61 +1.2 906,679 + PGA1_c08770 0.70 -1.6 906,688 + PGA1_c08770 0.72 +1.9 906,886 - +2.8 906,887 + -0.5 906,969 + PGA1_c08780 0.26 +2.4 907,060 + PGA1_c08780 0.53 -0.9
Or see this region's nucleotide sequence