Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07900

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07890 and PGA1_c07900 are separated by 31 nucleotidesPGA1_c07900 and PGA1_c07910 are separated by 9 nucleotides PGA1_c07890: PGA1_c07890 - cytoplasmic trehalase (AlgA) (from data), at 818,009 to 819,667 _c07890 PGA1_c07900: PGA1_c07900 - alpha-glucoside transport ATP-binding protein AglK, at 819,699 to 820,790 _c07900 PGA1_c07910: PGA1_c07910 - ABC-type Fe3+ transport system, periplasmic component, at 820,800 to 821,822 _c07910 Position (kb) 819 820 821Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 818.975 kb on - strand, within PGA1_c07890at 819.017 kb on + strand, within PGA1_c07890at 819.082 kb on - strand, within PGA1_c07890at 819.124 kb on + strand, within PGA1_c07890at 819.134 kb on + strand, within PGA1_c07890at 819.155 kb on + strand, within PGA1_c07890at 819.228 kb on + strand, within PGA1_c07890at 819.265 kb on - strand, within PGA1_c07890at 819.290 kb on - strand, within PGA1_c07890at 819.306 kb on + strand, within PGA1_c07890at 819.310 kb on + strand, within PGA1_c07890at 819.399 kb on + strand, within PGA1_c07890at 819.449 kb on - strand, within PGA1_c07890at 819.471 kb on - strand, within PGA1_c07890at 819.493 kb on - strand, within PGA1_c07890at 819.549 kb on + strandat 819.556 kb on + strandat 819.731 kb on + strandat 819.731 kb on + strandat 819.739 kb on - strandat 819.739 kb on - strandat 819.810 kb on + strand, within PGA1_c07900at 819.836 kb on + strand, within PGA1_c07900at 819.858 kb on + strand, within PGA1_c07900at 819.933 kb on + strand, within PGA1_c07900at 819.965 kb on + strand, within PGA1_c07900at 819.973 kb on - strand, within PGA1_c07900at 819.985 kb on + strand, within PGA1_c07900at 820.031 kb on - strand, within PGA1_c07900at 820.099 kb on - strand, within PGA1_c07900at 820.099 kb on - strand, within PGA1_c07900at 820.138 kb on + strand, within PGA1_c07900at 820.138 kb on + strand, within PGA1_c07900at 820.168 kb on - strand, within PGA1_c07900at 820.208 kb on - strand, within PGA1_c07900at 820.208 kb on - strand, within PGA1_c07900at 820.248 kb on + strand, within PGA1_c07900at 820.256 kb on - strand, within PGA1_c07900at 820.289 kb on - strand, within PGA1_c07900at 820.304 kb on + strand, within PGA1_c07900at 820.309 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.346 kb on + strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.354 kb on - strand, within PGA1_c07900at 820.365 kb on - strand, within PGA1_c07900at 820.470 kb on - strand, within PGA1_c07900at 820.475 kb on + strand, within PGA1_c07900at 820.521 kb on + strand, within PGA1_c07900at 820.529 kb on - strand, within PGA1_c07900at 820.529 kb on - strand, within PGA1_c07900at 820.574 kb on + strand, within PGA1_c07900at 820.612 kb on - strand, within PGA1_c07900at 820.620 kb on + strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900at 820.648 kb on - strand, within PGA1_c07900at 820.712 kb on - strandat 820.714 kb on + strandat 820.725 kb on - strandat 820.730 kb on - strandat 820.735 kb on - strandat 820.747 kb on + strandat 820.747 kb on + strandat 820.755 kb on - strandat 820.755 kb on - strandat 820.765 kb on - strandat 820.793 kb on - strandat 820.811 kb on + strandat 820.811 kb on + strandat 820.884 kb on + strandat 820.909 kb on - strand, within PGA1_c07910at 820.925 kb on - strand, within PGA1_c07910at 820.953 kb on - strand, within PGA1_c07910at 821.047 kb on - strand, within PGA1_c07910at 821.054 kb on + strand, within PGA1_c07910at 821.054 kb on + strand, within PGA1_c07910at 821.138 kb on - strand, within PGA1_c07910at 821.139 kb on + strand, within PGA1_c07910at 821.210 kb on + strand, within PGA1_c07910at 821.254 kb on + strand, within PGA1_c07910at 821.280 kb on + strand, within PGA1_c07910at 821.314 kb on - strand, within PGA1_c07910at 821.369 kb on + strand, within PGA1_c07910at 821.377 kb on - strand, within PGA1_c07910at 821.387 kb on + strand, within PGA1_c07910at 821.589 kb on + strand, within PGA1_c07910at 821.597 kb on - strand, within PGA1_c07910at 821.617 kb on - strand, within PGA1_c07910at 821.690 kb on - strand, within PGA1_c07910at 821.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
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818,975 - PGA1_c07890 0.58 +0.2
819,017 + PGA1_c07890 0.61 -1.3
819,082 - PGA1_c07890 0.65 -3.2
819,124 + PGA1_c07890 0.67 -2.7
819,134 + PGA1_c07890 0.68 -0.7
819,155 + PGA1_c07890 0.69 -0.5
819,228 + PGA1_c07890 0.73 -1.4
819,265 - PGA1_c07890 0.76 -1.4
819,290 - PGA1_c07890 0.77 -2.0
819,306 + PGA1_c07890 0.78 -1.7
819,310 + PGA1_c07890 0.78 -3.0
819,399 + PGA1_c07890 0.84 -1.8
819,449 - PGA1_c07890 0.87 -2.2
819,471 - PGA1_c07890 0.88 +2.1
819,493 - PGA1_c07890 0.89 -1.2
819,549 + -1.3
819,556 + -0.5
819,731 + -2.8
819,731 + -0.9
819,739 - -1.6
819,739 - -2.7
819,810 + PGA1_c07900 0.10 -1.6
819,836 + PGA1_c07900 0.13 -1.9
819,858 + PGA1_c07900 0.15 -3.0
819,933 + PGA1_c07900 0.21 -1.0
819,965 + PGA1_c07900 0.24 -2.2
819,973 - PGA1_c07900 0.25 +3.0
819,985 + PGA1_c07900 0.26 -0.6
820,031 - PGA1_c07900 0.30 -1.8
820,099 - PGA1_c07900 0.37 +2.4
820,099 - PGA1_c07900 0.37 -1.5
820,138 + PGA1_c07900 0.40 +1.8
820,138 + PGA1_c07900 0.40 -1.0
820,168 - PGA1_c07900 0.43 -1.4
820,208 - PGA1_c07900 0.47 -2.9
820,208 - PGA1_c07900 0.47 -1.2
820,248 + PGA1_c07900 0.50 -2.9
820,256 - PGA1_c07900 0.51 -1.9
820,289 - PGA1_c07900 0.54 -1.2
820,304 + PGA1_c07900 0.55 -0.7
820,309 + PGA1_c07900 0.56 +0.9
820,346 + PGA1_c07900 0.59 -2.7
820,346 + PGA1_c07900 0.59 -2.9
820,346 + PGA1_c07900 0.59 +1.8
820,346 + PGA1_c07900 0.59 +1.5
820,354 - PGA1_c07900 0.60 -2.1
820,354 - PGA1_c07900 0.60 -2.2
820,354 - PGA1_c07900 0.60 -3.4
820,365 - PGA1_c07900 0.61 -0.8
820,470 - PGA1_c07900 0.71 -2.2
820,475 + PGA1_c07900 0.71 -1.6
820,521 + PGA1_c07900 0.75 -1.6
820,529 - PGA1_c07900 0.76 +0.3
820,529 - PGA1_c07900 0.76 -3.1
820,574 + PGA1_c07900 0.80 -2.0
820,612 - PGA1_c07900 0.84 -0.6
820,620 + PGA1_c07900 0.84 -3.1
820,648 - PGA1_c07900 0.87 -2.0
820,648 - PGA1_c07900 0.87 -2.4
820,648 - PGA1_c07900 0.87 -1.4
820,712 - -2.2
820,714 + -0.9
820,725 - -2.4
820,730 - -1.0
820,735 - -3.2
820,747 + -1.7
820,747 + +1.0
820,755 - +0.5
820,755 - -2.8
820,765 - -1.7
820,793 - -3.2
820,811 + -0.8
820,811 + +0.7
820,884 + +3.1
820,909 - PGA1_c07910 0.11 -2.3
820,925 - PGA1_c07910 0.12 -2.2
820,953 - PGA1_c07910 0.15 +0.2
821,047 - PGA1_c07910 0.24 +2.2
821,054 + PGA1_c07910 0.25 +1.8
821,054 + PGA1_c07910 0.25 +2.2
821,138 - PGA1_c07910 0.33 +2.6
821,139 + PGA1_c07910 0.33 -1.4
821,210 + PGA1_c07910 0.40 -1.1
821,254 + PGA1_c07910 0.44 +2.3
821,280 + PGA1_c07910 0.47 -2.0
821,314 - PGA1_c07910 0.50 +1.3
821,369 + PGA1_c07910 0.56 -0.6
821,377 - PGA1_c07910 0.56 -0.6
821,387 + PGA1_c07910 0.57 +2.5
821,589 + PGA1_c07910 0.77 +1.9
821,597 - PGA1_c07910 0.78 +1.9
821,617 - PGA1_c07910 0.80 -1.5
821,690 - PGA1_c07910 0.87 -1.5
821,723 + +2.9

Or see this region's nucleotide sequence