Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07860

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07850 and PGA1_c07860 are separated by 248 nucleotidesPGA1_c07860 and PGA1_c07870 are separated by 157 nucleotides PGA1_c07850: PGA1_c07850 - transcriptional regulator, lacI family, at 812,987 to 814,018 _c07850 PGA1_c07860: PGA1_c07860 - alpha-glucosides-binding periplasmic protein AglE, at 814,267 to 815,619 _c07860 PGA1_c07870: PGA1_c07870 - alpha-glucoside transport system permease protein AglF, at 815,777 to 816,784 _c07870 Position (kb) 814 815 816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 813.360 kb on + strand, within PGA1_c07850at 813.408 kb on - strand, within PGA1_c07850at 813.457 kb on - strand, within PGA1_c07850at 813.538 kb on - strand, within PGA1_c07850at 813.546 kb on + strand, within PGA1_c07850at 813.575 kb on + strand, within PGA1_c07850at 813.590 kb on + strand, within PGA1_c07850at 813.598 kb on - strand, within PGA1_c07850at 813.616 kb on - strand, within PGA1_c07850at 813.693 kb on + strand, within PGA1_c07850at 813.920 kb on + strandat 813.930 kb on + strandat 813.985 kb on + strandat 814.061 kb on - strandat 814.071 kb on - strandat 814.071 kb on - strandat 814.094 kb on - strandat 814.112 kb on + strandat 814.223 kb on - strandat 814.241 kb on + strandat 814.298 kb on + strandat 814.298 kb on + strandat 814.306 kb on - strandat 814.306 kb on - strandat 814.326 kb on + strandat 814.326 kb on + strandat 814.326 kb on + strandat 814.387 kb on - strandat 814.389 kb on + strandat 814.419 kb on + strand, within PGA1_c07860at 814.450 kb on + strand, within PGA1_c07860at 814.458 kb on - strand, within PGA1_c07860at 814.458 kb on - strand, within PGA1_c07860at 814.504 kb on + strand, within PGA1_c07860at 814.509 kb on + strand, within PGA1_c07860at 814.509 kb on + strand, within PGA1_c07860at 814.523 kb on - strand, within PGA1_c07860at 814.560 kb on + strand, within PGA1_c07860at 814.611 kb on + strand, within PGA1_c07860at 814.619 kb on - strand, within PGA1_c07860at 814.647 kb on - strand, within PGA1_c07860at 814.652 kb on - strand, within PGA1_c07860at 814.692 kb on + strand, within PGA1_c07860at 814.692 kb on + strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.700 kb on - strand, within PGA1_c07860at 814.720 kb on - strand, within PGA1_c07860at 814.752 kb on + strand, within PGA1_c07860at 814.760 kb on - strand, within PGA1_c07860at 814.838 kb on - strand, within PGA1_c07860at 814.861 kb on + strand, within PGA1_c07860at 814.885 kb on + strand, within PGA1_c07860at 814.940 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.964 kb on + strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 814.972 kb on - strand, within PGA1_c07860at 815.036 kb on + strand, within PGA1_c07860at 815.123 kb on + strand, within PGA1_c07860at 815.126 kb on + strand, within PGA1_c07860at 815.131 kb on - strand, within PGA1_c07860at 815.166 kb on + strand, within PGA1_c07860at 815.204 kb on + strand, within PGA1_c07860at 815.260 kb on + strand, within PGA1_c07860at 815.270 kb on + strand, within PGA1_c07860at 815.270 kb on + strand, within PGA1_c07860at 815.278 kb on - strand, within PGA1_c07860at 815.278 kb on - strand, within PGA1_c07860at 815.293 kb on - strand, within PGA1_c07860at 815.293 kb on - strand, within PGA1_c07860at 815.370 kb on - strand, within PGA1_c07860at 815.380 kb on + strand, within PGA1_c07860at 815.398 kb on + strand, within PGA1_c07860at 815.407 kb on + strand, within PGA1_c07860at 815.408 kb on - strand, within PGA1_c07860at 815.429 kb on + strand, within PGA1_c07860at 815.468 kb on + strand, within PGA1_c07860at 815.470 kb on + strand, within PGA1_c07860at 815.492 kb on + strandat 815.500 kb on - strandat 815.537 kb on - strandat 815.577 kb on + strandat 815.613 kb on + strandat 815.622 kb on - strandat 815.639 kb on - strandat 815.710 kb on - strandat 815.717 kb on + strandat 815.719 kb on + strandat 815.798 kb on - strandat 815.800 kb on + strandat 815.819 kb on - strandat 815.867 kb on - strandat 815.930 kb on - strand, within PGA1_c07870at 815.964 kb on + strand, within PGA1_c07870at 815.988 kb on - strand, within PGA1_c07870at 815.993 kb on - strand, within PGA1_c07870at 816.025 kb on + strand, within PGA1_c07870at 816.033 kb on - strand, within PGA1_c07870at 816.153 kb on + strand, within PGA1_c07870at 816.161 kb on - strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.168 kb on + strand, within PGA1_c07870at 816.176 kb on - strand, within PGA1_c07870at 816.311 kb on + strand, within PGA1_c07870at 816.356 kb on - strand, within PGA1_c07870at 816.401 kb on + strand, within PGA1_c07870at 816.431 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.452 kb on - strand, within PGA1_c07870at 816.499 kb on + strand, within PGA1_c07870at 816.579 kb on + strand, within PGA1_c07870at 816.580 kb on - strand, within PGA1_c07870at 816.614 kb on + strand, within PGA1_c07870at 816.619 kb on + strand, within PGA1_c07870

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
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813,360 + PGA1_c07850 0.36 -0.9
813,408 - PGA1_c07850 0.41 +1.9
813,457 - PGA1_c07850 0.46 +0.7
813,538 - PGA1_c07850 0.53 +4.0
813,546 + PGA1_c07850 0.54 +0.1
813,575 + PGA1_c07850 0.57 +1.2
813,590 + PGA1_c07850 0.58 +1.1
813,598 - PGA1_c07850 0.59 +0.2
813,616 - PGA1_c07850 0.61 +0.6
813,693 + PGA1_c07850 0.68 -1.6
813,920 + +2.8
813,930 + -1.2
813,985 + -2.5
814,061 - +0.5
814,071 - +1.1
814,071 - +2.0
814,094 - -1.0
814,112 + -1.2
814,223 - -0.5
814,241 + -3.1
814,298 + -2.2
814,298 + -0.3
814,306 - -1.2
814,306 - -2.8
814,326 + -2.1
814,326 + -1.9
814,326 + -1.8
814,387 - +2.0
814,389 + +1.6
814,419 + PGA1_c07860 0.11 -0.8
814,450 + PGA1_c07860 0.14 -1.4
814,458 - PGA1_c07860 0.14 -1.8
814,458 - PGA1_c07860 0.14 -3.1
814,504 + PGA1_c07860 0.18 -1.3
814,509 + PGA1_c07860 0.18 -2.3
814,509 + PGA1_c07860 0.18 -1.9
814,523 - PGA1_c07860 0.19 -2.4
814,560 + PGA1_c07860 0.22 -1.0
814,611 + PGA1_c07860 0.25 -2.9
814,619 - PGA1_c07860 0.26 -3.0
814,647 - PGA1_c07860 0.28 -2.6
814,652 - PGA1_c07860 0.28 -1.1
814,692 + PGA1_c07860 0.31 -1.4
814,692 + PGA1_c07860 0.31 -2.7
814,700 - PGA1_c07860 0.32 -2.8
814,700 - PGA1_c07860 0.32 -2.0
814,700 - PGA1_c07860 0.32 -3.6
814,720 - PGA1_c07860 0.33 -3.1
814,752 + PGA1_c07860 0.36 -0.5
814,760 - PGA1_c07860 0.36 -1.4
814,838 - PGA1_c07860 0.42 -1.3
814,861 + PGA1_c07860 0.44 -0.1
814,885 + PGA1_c07860 0.46 -1.2
814,940 + PGA1_c07860 0.50 -3.5
814,964 + PGA1_c07860 0.52 -2.9
814,964 + PGA1_c07860 0.52 -0.9
814,964 + PGA1_c07860 0.52 -1.8
814,964 + PGA1_c07860 0.52 -2.6
814,964 + PGA1_c07860 0.52 -2.1
814,964 + PGA1_c07860 0.52 -2.8
814,972 - PGA1_c07860 0.52 -0.8
814,972 - PGA1_c07860 0.52 +1.3
814,972 - PGA1_c07860 0.52 -2.2
814,972 - PGA1_c07860 0.52 -0.5
814,972 - PGA1_c07860 0.52 -3.4
815,036 + PGA1_c07860 0.57 -2.2
815,123 + PGA1_c07860 0.63 -2.0
815,126 + PGA1_c07860 0.63 +0.4
815,131 - PGA1_c07860 0.64 +3.3
815,166 + PGA1_c07860 0.66 -2.5
815,204 + PGA1_c07860 0.69 -1.9
815,260 + PGA1_c07860 0.73 -3.1
815,270 + PGA1_c07860 0.74 -2.7
815,270 + PGA1_c07860 0.74 -1.5
815,278 - PGA1_c07860 0.75 -3.3
815,278 - PGA1_c07860 0.75 -1.8
815,293 - PGA1_c07860 0.76 -2.0
815,293 - PGA1_c07860 0.76 -1.7
815,370 - PGA1_c07860 0.82 -1.5
815,380 + PGA1_c07860 0.82 -0.5
815,398 + PGA1_c07860 0.84 -2.3
815,407 + PGA1_c07860 0.84 -0.8
815,408 - PGA1_c07860 0.84 -1.1
815,429 + PGA1_c07860 0.86 -0.7
815,468 + PGA1_c07860 0.89 -1.4
815,470 + PGA1_c07860 0.89 -0.5
815,492 + -1.3
815,500 - +0.3
815,537 - -1.5
815,577 + -2.5
815,613 + -1.6
815,622 - -2.8
815,639 - -1.7
815,710 - +0.2
815,717 + -1.0
815,719 + -1.2
815,798 - -0.4
815,800 + -2.0
815,819 - -2.9
815,867 - +0.5
815,930 - PGA1_c07870 0.15 -1.3
815,964 + PGA1_c07870 0.19 -1.8
815,988 - PGA1_c07870 0.21 -2.5
815,993 - PGA1_c07870 0.21 -0.7
816,025 + PGA1_c07870 0.25 -3.9
816,033 - PGA1_c07870 0.25 -2.5
816,153 + PGA1_c07870 0.37 -2.4
816,161 - PGA1_c07870 0.38 -3.0
816,168 + PGA1_c07870 0.39 -1.9
816,168 + PGA1_c07870 0.39 -0.9
816,176 - PGA1_c07870 0.40 +1.2
816,311 + PGA1_c07870 0.53 -1.8
816,356 - PGA1_c07870 0.57 -2.2
816,401 + PGA1_c07870 0.62 -1.8
816,431 - PGA1_c07870 0.65 -0.9
816,452 - PGA1_c07870 0.67 +3.1
816,452 - PGA1_c07870 0.67 -2.4
816,499 + PGA1_c07870 0.72 -2.2
816,579 + PGA1_c07870 0.80 -2.2
816,580 - PGA1_c07870 0.80 -2.6
816,614 + PGA1_c07870 0.83 -2.7
816,619 + PGA1_c07870 0.84 -1.2

Or see this region's nucleotide sequence