Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07830 and PGA1_c07840 are separated by 22 nucleotides PGA1_c07840 and PGA1_c07850 are separated by 26 nucleotides
PGA1_c07830: PGA1_c07830 - acetylornithine deacetylase ArgE, at 810,449 to 811,603
_c07830
PGA1_c07840: PGA1_c07840 - Beta-glucosidase (EC 3.2.1.21) (from data) , at 811,626 to 812,960
_c07840
PGA1_c07850: PGA1_c07850 - transcriptional regulator, lacI family, at 812,987 to 814,018
_c07850
Position (kb)
811
812
813 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 810.696 kb on - strand, within PGA1_c07830 at 810.733 kb on + strand, within PGA1_c07830 at 810.733 kb on + strand, within PGA1_c07830 at 810.814 kb on - strand, within PGA1_c07830 at 810.854 kb on - strand, within PGA1_c07830 at 810.897 kb on - strand, within PGA1_c07830 at 810.930 kb on + strand, within PGA1_c07830 at 810.964 kb on + strand, within PGA1_c07830 at 810.983 kb on - strand, within PGA1_c07830 at 811.002 kb on + strand, within PGA1_c07830 at 811.010 kb on - strand, within PGA1_c07830 at 811.010 kb on - strand, within PGA1_c07830 at 811.010 kb on - strand, within PGA1_c07830 at 811.043 kb on + strand, within PGA1_c07830 at 811.048 kb on + strand, within PGA1_c07830 at 811.104 kb on + strand, within PGA1_c07830 at 811.113 kb on - strand, within PGA1_c07830 at 811.125 kb on + strand, within PGA1_c07830 at 811.133 kb on - strand, within PGA1_c07830 at 811.143 kb on - strand, within PGA1_c07830 at 811.150 kb on + strand, within PGA1_c07830 at 811.153 kb on - strand, within PGA1_c07830 at 811.158 kb on - strand, within PGA1_c07830 at 811.160 kb on + strand, within PGA1_c07830 at 811.229 kb on + strand, within PGA1_c07830 at 811.229 kb on + strand, within PGA1_c07830 at 811.255 kb on - strand, within PGA1_c07830 at 811.327 kb on + strand, within PGA1_c07830 at 811.362 kb on - strand, within PGA1_c07830 at 811.363 kb on + strand, within PGA1_c07830 at 811.372 kb on - strand, within PGA1_c07830 at 811.406 kb on - strand, within PGA1_c07830 at 811.476 kb on - strand, within PGA1_c07830 at 811.568 kb on + strand at 811.576 kb on - strand at 811.628 kb on + strand at 811.651 kb on + strand at 811.681 kb on - strand at 811.722 kb on - strand at 811.742 kb on - strand at 811.742 kb on - strand at 811.782 kb on - strand, within PGA1_c07840 at 811.788 kb on + strand, within PGA1_c07840 at 811.819 kb on + strand, within PGA1_c07840 at 811.819 kb on + strand, within PGA1_c07840 at 811.821 kb on + strand, within PGA1_c07840 at 811.827 kb on - strand, within PGA1_c07840 at 811.827 kb on - strand, within PGA1_c07840 at 811.933 kb on + strand, within PGA1_c07840 at 811.941 kb on - strand, within PGA1_c07840 at 811.946 kb on + strand, within PGA1_c07840 at 811.956 kb on - strand, within PGA1_c07840 at 812.002 kb on + strand, within PGA1_c07840 at 812.010 kb on - strand, within PGA1_c07840 at 812.022 kb on - strand, within PGA1_c07840 at 812.039 kb on + strand, within PGA1_c07840 at 812.040 kb on + strand, within PGA1_c07840 at 812.102 kb on - strand, within PGA1_c07840 at 812.265 kb on + strand, within PGA1_c07840 at 812.275 kb on + strand, within PGA1_c07840 at 812.405 kb on + strand, within PGA1_c07840 at 812.413 kb on - strand, within PGA1_c07840 at 812.449 kb on + strand, within PGA1_c07840 at 812.471 kb on - strand, within PGA1_c07840 at 812.476 kb on - strand, within PGA1_c07840 at 812.605 kb on + strand, within PGA1_c07840 at 812.618 kb on - strand, within PGA1_c07840 at 812.620 kb on - strand, within PGA1_c07840 at 812.678 kb on - strand, within PGA1_c07840 at 812.690 kb on + strand, within PGA1_c07840 at 812.695 kb on + strand, within PGA1_c07840 at 812.703 kb on - strand, within PGA1_c07840 at 812.703 kb on - strand, within PGA1_c07840 at 812.705 kb on + strand, within PGA1_c07840 at 812.864 kb on - strand at 812.984 kb on - strand at 813.014 kb on - strand at 813.058 kb on - strand at 813.136 kb on - strand, within PGA1_c07850 at 813.235 kb on - strand, within PGA1_c07850 at 813.360 kb on + strand, within PGA1_c07850 at 813.408 kb on - strand, within PGA1_c07850 at 813.457 kb on - strand, within PGA1_c07850 at 813.538 kb on - strand, within PGA1_c07850 at 813.546 kb on + strand, within PGA1_c07850 at 813.575 kb on + strand, within PGA1_c07850 at 813.590 kb on + strand, within PGA1_c07850 at 813.598 kb on - strand, within PGA1_c07850 at 813.616 kb on - strand, within PGA1_c07850 at 813.693 kb on + strand, within PGA1_c07850 at 813.920 kb on + strand at 813.930 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 810,696 - PGA1_c07830 0.21 -1.1 810,733 + PGA1_c07830 0.25 -1.6 810,733 + PGA1_c07830 0.25 +0.5 810,814 - PGA1_c07830 0.32 -2.3 810,854 - PGA1_c07830 0.35 +3.2 810,897 - PGA1_c07830 0.39 +1.3 810,930 + PGA1_c07830 0.42 +1.0 810,964 + PGA1_c07830 0.45 -1.2 810,983 - PGA1_c07830 0.46 +2.3 811,002 + PGA1_c07830 0.48 -1.7 811,010 - PGA1_c07830 0.49 -1.2 811,010 - PGA1_c07830 0.49 +1.6 811,010 - PGA1_c07830 0.49 +0.4 811,043 + PGA1_c07830 0.51 +0.3 811,048 + PGA1_c07830 0.52 +2.1 811,104 + PGA1_c07830 0.57 -0.9 811,113 - PGA1_c07830 0.57 +2.9 811,125 + PGA1_c07830 0.59 -0.8 811,133 - PGA1_c07830 0.59 -2.7 811,143 - PGA1_c07830 0.60 +0.1 811,150 + PGA1_c07830 0.61 +2.2 811,153 - PGA1_c07830 0.61 +2.0 811,158 - PGA1_c07830 0.61 +3.6 811,160 + PGA1_c07830 0.62 -0.1 811,229 + PGA1_c07830 0.68 +4.0 811,229 + PGA1_c07830 0.68 +3.3 811,255 - PGA1_c07830 0.70 +2.9 811,327 + PGA1_c07830 0.76 -1.9 811,362 - PGA1_c07830 0.79 +0.4 811,363 + PGA1_c07830 0.79 +0.9 811,372 - PGA1_c07830 0.80 -1.4 811,406 - PGA1_c07830 0.83 -1.5 811,476 - PGA1_c07830 0.89 +1.7 811,568 + +2.0 811,576 - +0.5 811,628 + +1.6 811,651 + -0.4 811,681 - -1.1 811,722 - +0.2 811,742 - -2.5 811,742 - +0.2 811,782 - PGA1_c07840 0.12 +3.1 811,788 + PGA1_c07840 0.12 +1.0 811,819 + PGA1_c07840 0.14 -1.7 811,819 + PGA1_c07840 0.14 +0.2 811,821 + PGA1_c07840 0.15 -0.9 811,827 - PGA1_c07840 0.15 +1.7 811,827 - PGA1_c07840 0.15 +0.8 811,933 + PGA1_c07840 0.23 -0.5 811,941 - PGA1_c07840 0.24 +3.0 811,946 + PGA1_c07840 0.24 +1.4 811,956 - PGA1_c07840 0.25 +3.1 812,002 + PGA1_c07840 0.28 -3.1 812,010 - PGA1_c07840 0.29 -1.2 812,022 - PGA1_c07840 0.30 +2.4 812,039 + PGA1_c07840 0.31 -1.6 812,040 + PGA1_c07840 0.31 -2.7 812,102 - PGA1_c07840 0.36 +0.2 812,265 + PGA1_c07840 0.48 -3.4 812,275 + PGA1_c07840 0.49 -2.5 812,405 + PGA1_c07840 0.58 +0.4 812,413 - PGA1_c07840 0.59 -2.3 812,449 + PGA1_c07840 0.62 +0.1 812,471 - PGA1_c07840 0.63 +0.8 812,476 - PGA1_c07840 0.64 +2.1 812,605 + PGA1_c07840 0.73 +0.1 812,618 - PGA1_c07840 0.74 +2.2 812,620 - PGA1_c07840 0.74 +2.4 812,678 - PGA1_c07840 0.79 +3.1 812,690 + PGA1_c07840 0.80 +1.6 812,695 + PGA1_c07840 0.80 +3.5 812,703 - PGA1_c07840 0.81 -2.6 812,703 - PGA1_c07840 0.81 +2.5 812,705 + PGA1_c07840 0.81 +0.6 812,864 - +1.1 812,984 - -1.9 813,014 - +1.9 813,058 - +1.4 813,136 - PGA1_c07850 0.14 +1.9 813,235 - PGA1_c07850 0.24 -0.5 813,360 + PGA1_c07850 0.36 -0.9 813,408 - PGA1_c07850 0.41 +1.9 813,457 - PGA1_c07850 0.46 +0.7 813,538 - PGA1_c07850 0.53 +4.0 813,546 + PGA1_c07850 0.54 +0.1 813,575 + PGA1_c07850 0.57 +1.2 813,590 + PGA1_c07850 0.58 +1.1 813,598 - PGA1_c07850 0.59 +0.2 813,616 - PGA1_c07850 0.61 +0.6 813,693 + PGA1_c07850 0.68 -1.6 813,920 + +2.8 813,930 + -1.2
Or see this region's nucleotide sequence