Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07800 and PGA1_c07810 are separated by 232 nucleotides PGA1_c07810 and PGA1_c07820 are separated by 34 nucleotides
PGA1_c07800: PGA1_c07800 - putative transcriptional regulator, lacI family, at 806,594 to 807,619
_c07800
PGA1_c07810: PGA1_c07810 - aminotransferase class-III, at 807,852 to 809,225
_c07810
PGA1_c07820: PGA1_c07820 - putative peptidase M22, at 809,260 to 810,444
_c07820
Position (kb) 807
808
809
810 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 806.877 kb on + strand, within PGA1_c07800 at 806.877 kb on + strand, within PGA1_c07800 at 806.901 kb on - strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.910 kb on + strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.918 kb on - strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.927 kb on + strand, within PGA1_c07800 at 806.932 kb on + strand, within PGA1_c07800 at 806.935 kb on - strand, within PGA1_c07800 at 806.960 kb on + strand, within PGA1_c07800 at 806.982 kb on - strand, within PGA1_c07800 at 807.032 kb on - strand, within PGA1_c07800 at 807.081 kb on - strand, within PGA1_c07800 at 807.264 kb on + strand, within PGA1_c07800 at 807.305 kb on - strand, within PGA1_c07800 at 807.322 kb on + strand, within PGA1_c07800 at 807.388 kb on - strand, within PGA1_c07800 at 807.434 kb on - strand, within PGA1_c07800 at 807.551 kb on - strand at 807.568 kb on - strand at 807.568 kb on - strand at 807.570 kb on + strand at 807.686 kb on + strand at 807.694 kb on - strand at 807.732 kb on + strand at 807.740 kb on - strand at 807.740 kb on - strand at 807.771 kb on + strand at 807.773 kb on + strand at 807.800 kb on + strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.808 kb on - strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.834 kb on + strand at 807.842 kb on - strand at 807.891 kb on + strand at 807.904 kb on + strand at 807.976 kb on + strand at 808.038 kb on - strand, within PGA1_c07810 at 808.041 kb on + strand, within PGA1_c07810 at 808.049 kb on - strand, within PGA1_c07810 at 808.049 kb on - strand, within PGA1_c07810 at 808.049 kb on - strand, within PGA1_c07810 at 808.077 kb on + strand, within PGA1_c07810 at 808.116 kb on + strand, within PGA1_c07810 at 808.116 kb on + strand, within PGA1_c07810 at 808.123 kb on + strand, within PGA1_c07810 at 808.131 kb on - strand, within PGA1_c07810 at 808.131 kb on - strand, within PGA1_c07810 at 808.133 kb on + strand, within PGA1_c07810 at 808.135 kb on + strand, within PGA1_c07810 at 808.142 kb on - strand, within PGA1_c07810 at 808.170 kb on + strand, within PGA1_c07810 at 808.189 kb on - strand, within PGA1_c07810 at 808.212 kb on + strand, within PGA1_c07810 at 808.246 kb on - strand, within PGA1_c07810 at 808.305 kb on - strand, within PGA1_c07810 at 808.312 kb on + strand, within PGA1_c07810 at 808.312 kb on + strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.320 kb on - strand, within PGA1_c07810 at 808.325 kb on - strand, within PGA1_c07810 at 808.342 kb on + strand, within PGA1_c07810 at 808.350 kb on - strand, within PGA1_c07810 at 808.396 kb on - strand, within PGA1_c07810 at 808.420 kb on + strand, within PGA1_c07810 at 808.420 kb on + strand, within PGA1_c07810 at 808.441 kb on + strand, within PGA1_c07810 at 808.458 kb on - strand, within PGA1_c07810 at 808.507 kb on - strand, within PGA1_c07810 at 808.515 kb on + strand, within PGA1_c07810 at 808.533 kb on + strand, within PGA1_c07810 at 808.543 kb on + strand, within PGA1_c07810 at 808.631 kb on + strand, within PGA1_c07810 at 808.650 kb on - strand, within PGA1_c07810 at 808.722 kb on + strand, within PGA1_c07810 at 808.732 kb on + strand, within PGA1_c07810 at 808.732 kb on + strand, within PGA1_c07810 at 808.740 kb on + strand, within PGA1_c07810 at 808.794 kb on + strand, within PGA1_c07810 at 808.797 kb on - strand, within PGA1_c07810 at 808.818 kb on + strand, within PGA1_c07810 at 808.885 kb on + strand, within PGA1_c07810 at 808.886 kb on + strand, within PGA1_c07810 at 808.894 kb on - strand, within PGA1_c07810 at 808.894 kb on - strand, within PGA1_c07810 at 808.895 kb on + strand, within PGA1_c07810 at 808.955 kb on - strand, within PGA1_c07810 at 808.961 kb on + strand, within PGA1_c07810 at 809.002 kb on - strand, within PGA1_c07810 at 809.060 kb on - strand, within PGA1_c07810 at 809.088 kb on + strand at 809.096 kb on - strand at 809.096 kb on - strand at 809.101 kb on - strand at 809.119 kb on - strand at 809.125 kb on + strand at 809.173 kb on - strand at 809.173 kb on - strand at 809.195 kb on - strand at 809.214 kb on + strand at 809.214 kb on + strand at 809.214 kb on + strand at 809.214 kb on + strand at 809.214 kb on + strand at 809.269 kb on + strand at 809.269 kb on + strand at 809.269 kb on + strand at 809.269 kb on + strand at 809.270 kb on - strand at 809.277 kb on - strand at 809.277 kb on - strand at 809.279 kb on + strand at 809.318 kb on - strand at 809.369 kb on + strand at 809.382 kb on - strand, within PGA1_c07820 at 809.444 kb on + strand, within PGA1_c07820 at 809.484 kb on - strand, within PGA1_c07820 at 809.517 kb on - strand, within PGA1_c07820 at 809.517 kb on - strand, within PGA1_c07820 at 809.623 kb on + strand, within PGA1_c07820 at 809.658 kb on + strand, within PGA1_c07820 at 809.658 kb on + strand, within PGA1_c07820 at 809.716 kb on - strand, within PGA1_c07820 at 809.766 kb on + strand, within PGA1_c07820 at 809.766 kb on + strand, within PGA1_c07820 at 809.794 kb on - strand, within PGA1_c07820 at 809.796 kb on + strand, within PGA1_c07820 at 809.825 kb on - strand, within PGA1_c07820 at 809.825 kb on - strand, within PGA1_c07820 at 809.860 kb on - strand, within PGA1_c07820 at 809.889 kb on + strand, within PGA1_c07820 at 809.889 kb on + strand, within PGA1_c07820 at 809.897 kb on - strand, within PGA1_c07820 at 809.935 kb on - strand, within PGA1_c07820 at 809.945 kb on - strand, within PGA1_c07820 at 809.953 kb on + strand, within PGA1_c07820 at 810.110 kb on - strand, within PGA1_c07820 at 810.110 kb on - strand, within PGA1_c07820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 806,877 + PGA1_c07800 0.28 -1.4 806,877 + PGA1_c07800 0.28 -1.2 806,901 - PGA1_c07800 0.30 +3.7 806,910 + PGA1_c07800 0.31 +3.0 806,910 + PGA1_c07800 0.31 +0.4 806,910 + PGA1_c07800 0.31 -2.3 806,910 + PGA1_c07800 0.31 +2.0 806,910 + PGA1_c07800 0.31 +1.5 806,918 - PGA1_c07800 0.32 +3.4 806,918 - PGA1_c07800 0.32 -1.6 806,918 - PGA1_c07800 0.32 +0.6 806,927 + PGA1_c07800 0.32 +1.3 806,927 + PGA1_c07800 0.32 -1.4 806,927 + PGA1_c07800 0.32 +2.2 806,932 + PGA1_c07800 0.33 -1.2 806,935 - PGA1_c07800 0.33 -0.9 806,960 + PGA1_c07800 0.36 +2.1 806,982 - PGA1_c07800 0.38 +2.2 807,032 - PGA1_c07800 0.43 +3.4 807,081 - PGA1_c07800 0.47 -1.9 807,264 + PGA1_c07800 0.65 -2.4 807,305 - PGA1_c07800 0.69 -3.4 807,322 + PGA1_c07800 0.71 +1.6 807,388 - PGA1_c07800 0.77 +0.1 807,434 - PGA1_c07800 0.82 -1.8 807,551 - -1.6 807,568 - +1.4 807,568 - -2.2 807,570 + -2.8 807,686 + -2.4 807,694 - -2.9 807,732 + +1.7 807,740 - -3.1 807,740 - -2.6 807,771 + -0.4 807,773 + -1.7 807,800 + -1.2 807,808 - +3.5 807,808 - -2.1 807,808 - -1.1 807,808 - +0.7 807,808 - -1.9 807,808 - -1.0 807,834 + -0.8 807,834 + -3.1 807,834 + -1.2 807,834 + +0.8 807,834 + +3.0 807,834 + +1.7 807,842 - +1.1 807,891 + -3.1 807,904 + +1.2 807,976 + +0.5 808,038 - PGA1_c07810 0.14 +3.1 808,041 + PGA1_c07810 0.14 -0.2 808,049 - PGA1_c07810 0.14 -0.8 808,049 - PGA1_c07810 0.14 -0.9 808,049 - PGA1_c07810 0.14 -1.8 808,077 + PGA1_c07810 0.16 +2.7 808,116 + PGA1_c07810 0.19 +3.2 808,116 + PGA1_c07810 0.19 -1.4 808,123 + PGA1_c07810 0.20 -0.5 808,131 - PGA1_c07810 0.20 +0.5 808,131 - PGA1_c07810 0.20 -0.6 808,133 + PGA1_c07810 0.20 -2.2 808,135 + PGA1_c07810 0.21 -3.3 808,142 - PGA1_c07810 0.21 +0.1 808,170 + PGA1_c07810 0.23 -2.2 808,189 - PGA1_c07810 0.25 +1.2 808,212 + PGA1_c07810 0.26 -2.9 808,246 - PGA1_c07810 0.29 -2.4 808,305 - PGA1_c07810 0.33 +3.1 808,312 + PGA1_c07810 0.33 -3.1 808,312 + PGA1_c07810 0.33 -0.9 808,320 - PGA1_c07810 0.34 -2.5 808,320 - PGA1_c07810 0.34 -1.5 808,320 - PGA1_c07810 0.34 -1.4 808,320 - PGA1_c07810 0.34 +2.8 808,325 - PGA1_c07810 0.34 -1.0 808,342 + PGA1_c07810 0.36 -2.1 808,350 - PGA1_c07810 0.36 +2.0 808,396 - PGA1_c07810 0.40 -0.8 808,420 + PGA1_c07810 0.41 +1.0 808,420 + PGA1_c07810 0.41 +1.6 808,441 + PGA1_c07810 0.43 +3.6 808,458 - PGA1_c07810 0.44 +0.8 808,507 - PGA1_c07810 0.48 +1.6 808,515 + PGA1_c07810 0.48 +1.5 808,533 + PGA1_c07810 0.50 +1.7 808,543 + PGA1_c07810 0.50 -2.8 808,631 + PGA1_c07810 0.57 +2.7 808,650 - PGA1_c07810 0.58 -0.1 808,722 + PGA1_c07810 0.63 -1.2 808,732 + PGA1_c07810 0.64 +0.9 808,732 + PGA1_c07810 0.64 -1.4 808,740 + PGA1_c07810 0.65 -2.2 808,794 + PGA1_c07810 0.69 +3.0 808,797 - PGA1_c07810 0.69 +1.1 808,818 + PGA1_c07810 0.70 -1.2 808,885 + PGA1_c07810 0.75 -0.9 808,886 + PGA1_c07810 0.75 -1.9 808,894 - PGA1_c07810 0.76 -1.7 808,894 - PGA1_c07810 0.76 -0.9 808,895 + PGA1_c07810 0.76 -2.2 808,955 - PGA1_c07810 0.80 -0.4 808,961 + PGA1_c07810 0.81 -2.4 809,002 - PGA1_c07810 0.84 +0.9 809,060 - PGA1_c07810 0.88 +1.2 809,088 + -0.4 809,096 - -1.3 809,096 - +0.2 809,101 - -1.5 809,119 - -1.7 809,125 + -1.0 809,173 - +1.7 809,173 - -2.9 809,195 - +2.1 809,214 + -1.2 809,214 + -0.8 809,214 + -0.7 809,214 + -0.8 809,214 + +1.1 809,269 + -0.2 809,269 + +0.8 809,269 + -0.3 809,269 + +1.2 809,270 - -0.2 809,277 - -1.1 809,277 - +1.8 809,279 + +2.7 809,318 - +3.1 809,369 + +1.5 809,382 - PGA1_c07820 0.10 -3.3 809,444 + PGA1_c07820 0.16 -0.6 809,484 - PGA1_c07820 0.19 -1.2 809,517 - PGA1_c07820 0.22 +1.7 809,517 - PGA1_c07820 0.22 -2.5 809,623 + PGA1_c07820 0.31 +1.0 809,658 + PGA1_c07820 0.34 +2.2 809,658 + PGA1_c07820 0.34 +3.5 809,716 - PGA1_c07820 0.38 -2.0 809,766 + PGA1_c07820 0.43 +1.2 809,766 + PGA1_c07820 0.43 +0.5 809,794 - PGA1_c07820 0.45 -0.5 809,796 + PGA1_c07820 0.45 -2.8 809,825 - PGA1_c07820 0.48 -2.9 809,825 - PGA1_c07820 0.48 -2.8 809,860 - PGA1_c07820 0.51 -2.7 809,889 + PGA1_c07820 0.53 +2.1 809,889 + PGA1_c07820 0.53 +1.1 809,897 - PGA1_c07820 0.54 +0.6 809,935 - PGA1_c07820 0.57 -2.8 809,945 - PGA1_c07820 0.58 +1.7 809,953 + PGA1_c07820 0.58 -1.4 810,110 - PGA1_c07820 0.72 +0.2 810,110 - PGA1_c07820 0.72 -2.4
Or see this region's nucleotide sequence