Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07480 and PGA1_c07490 overlap by 1 nucleotides PGA1_c07490 and PGA1_c07500 are separated by 98 nucleotides PGA1_c07500 and PGA1_c07510 are separated by 41 nucleotides PGA1_c07510 and PGA1_c07520 are separated by 31 nucleotides PGA1_c07520 and PGA1_c07530 are separated by 64 nucleotides
PGA1_c07480: PGA1_c07480 - Lysophospholipase, at 772,837 to 773,799
_c07480
PGA1_c07490: PGA1_c07490 - Putative sterol carrier protein, at 773,799 to 774,086
_c07490
PGA1_c07500: PGA1_c07500 - hypothetical protein, at 774,185 to 774,754
_c07500
PGA1_c07510: PGA1_c07510 - DNA/RNA helicase-like protein, at 774,796 to 777,813
_c07510
PGA1_c07520: PGA1_c07520 - putative heat shock protein, at 777,845 to 778,210
_c07520
PGA1_c07530: PGA1_c07530 - ferredoxin FdxA, at 778,275 to 778,613
_c07530
Position (kb) 774
775
776
777
778 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 773.797 kb on + strand at 773.805 kb on - strand at 773.817 kb on - strand at 773.913 kb on + strand, within PGA1_c07490 at 774.002 kb on - strand, within PGA1_c07490 at 774.069 kb on + strand at 774.086 kb on + strand at 774.107 kb on - strand at 774.166 kb on + strand at 774.172 kb on + strand at 774.172 kb on + strand at 774.174 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.180 kb on - strand at 774.213 kb on - strand at 774.229 kb on + strand at 774.229 kb on + strand at 774.237 kb on - strand at 774.247 kb on - strand, within PGA1_c07500 at 774.247 kb on - strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.310 kb on + strand, within PGA1_c07500 at 774.311 kb on + strand, within PGA1_c07500 at 774.318 kb on - strand, within PGA1_c07500 at 774.318 kb on - strand, within PGA1_c07500 at 774.338 kb on + strand, within PGA1_c07500 at 774.338 kb on + strand, within PGA1_c07500 at 774.341 kb on - strand, within PGA1_c07500 at 774.343 kb on + strand, within PGA1_c07500 at 774.356 kb on - strand, within PGA1_c07500 at 774.356 kb on - strand, within PGA1_c07500 at 774.362 kb on + strand, within PGA1_c07500 at 774.370 kb on - strand, within PGA1_c07500 at 774.373 kb on + strand, within PGA1_c07500 at 774.420 kb on + strand, within PGA1_c07500 at 774.462 kb on - strand, within PGA1_c07500 at 774.502 kb on + strand, within PGA1_c07500 at 774.502 kb on + strand, within PGA1_c07500 at 774.577 kb on + strand, within PGA1_c07500 at 774.585 kb on - strand, within PGA1_c07500 at 774.631 kb on + strand, within PGA1_c07500 at 774.631 kb on + strand, within PGA1_c07500 at 774.639 kb on - strand, within PGA1_c07500 at 774.661 kb on - strand, within PGA1_c07500 at 774.669 kb on - strand, within PGA1_c07500 at 774.676 kb on + strand, within PGA1_c07500 at 774.684 kb on - strand, within PGA1_c07500 at 774.727 kb on + strand at 774.742 kb on - strand at 774.742 kb on - strand at 774.749 kb on + strand at 774.781 kb on - strand at 774.828 kb on + strand at 774.831 kb on - strand at 774.837 kb on - strand at 774.849 kb on + strand at 774.897 kb on + strand at 774.956 kb on - strand at 774.979 kb on - strand at 775.020 kb on - strand at 775.037 kb on - strand at 775.045 kb on + strand at 775.045 kb on + strand at 775.064 kb on - strand at 775.098 kb on - strand, within PGA1_c07510 at 775.114 kb on - strand, within PGA1_c07510 at 775.114 kb on - strand, within PGA1_c07510 at 775.114 kb on - strand, within PGA1_c07510 at 775.119 kb on - strand, within PGA1_c07510 at 775.146 kb on + strand, within PGA1_c07510 at 775.218 kb on + strand, within PGA1_c07510 at 775.226 kb on - strand, within PGA1_c07510 at 775.226 kb on - strand, within PGA1_c07510 at 775.254 kb on + strand, within PGA1_c07510 at 775.258 kb on + strand, within PGA1_c07510 at 775.271 kb on - strand, within PGA1_c07510 at 775.282 kb on - strand, within PGA1_c07510 at 775.346 kb on + strand, within PGA1_c07510 at 775.386 kb on + strand, within PGA1_c07510 at 775.386 kb on + strand, within PGA1_c07510 at 775.386 kb on + strand, within PGA1_c07510 at 775.394 kb on - strand, within PGA1_c07510 at 775.433 kb on - strand, within PGA1_c07510 at 775.457 kb on + strand, within PGA1_c07510 at 775.499 kb on + strand, within PGA1_c07510 at 775.513 kb on + strand, within PGA1_c07510 at 775.527 kb on + strand, within PGA1_c07510 at 775.627 kb on - strand, within PGA1_c07510 at 775.670 kb on + strand, within PGA1_c07510 at 775.718 kb on + strand, within PGA1_c07510 at 775.741 kb on + strand, within PGA1_c07510 at 775.875 kb on - strand, within PGA1_c07510 at 775.875 kb on - strand, within PGA1_c07510 at 775.875 kb on - strand, within PGA1_c07510 at 775.890 kb on + strand, within PGA1_c07510 at 775.890 kb on + strand, within PGA1_c07510 at 775.890 kb on + strand, within PGA1_c07510 at 775.898 kb on - strand, within PGA1_c07510 at 775.933 kb on - strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.982 kb on + strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 775.990 kb on - strand, within PGA1_c07510 at 776.031 kb on + strand, within PGA1_c07510 at 776.048 kb on + strand, within PGA1_c07510 at 776.061 kb on + strand, within PGA1_c07510 at 776.069 kb on - strand, within PGA1_c07510 at 776.076 kb on - strand, within PGA1_c07510 at 776.090 kb on + strand, within PGA1_c07510 at 776.096 kb on + strand, within PGA1_c07510 at 776.101 kb on + strand, within PGA1_c07510 at 776.156 kb on - strand, within PGA1_c07510 at 776.158 kb on + strand, within PGA1_c07510 at 776.158 kb on + strand, within PGA1_c07510 at 776.158 kb on + strand, within PGA1_c07510 at 776.166 kb on - strand, within PGA1_c07510 at 776.172 kb on + strand, within PGA1_c07510 at 776.180 kb on - strand, within PGA1_c07510 at 776.188 kb on - strand, within PGA1_c07510 at 776.190 kb on + strand, within PGA1_c07510 at 776.191 kb on + strand, within PGA1_c07510 at 776.225 kb on - strand, within PGA1_c07510 at 776.258 kb on - strand, within PGA1_c07510 at 776.268 kb on - strand, within PGA1_c07510 at 776.290 kb on - strand, within PGA1_c07510 at 776.291 kb on - strand, within PGA1_c07510 at 776.292 kb on - strand, within PGA1_c07510 at 776.292 kb on - strand, within PGA1_c07510 at 776.336 kb on - strand, within PGA1_c07510 at 776.391 kb on + strand, within PGA1_c07510 at 776.399 kb on - strand, within PGA1_c07510 at 776.418 kb on + strand, within PGA1_c07510 at 776.470 kb on + strand, within PGA1_c07510 at 776.484 kb on + strand, within PGA1_c07510 at 776.484 kb on + strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.492 kb on - strand, within PGA1_c07510 at 776.522 kb on + strand, within PGA1_c07510 at 776.522 kb on + strand, within PGA1_c07510 at 776.522 kb on + strand, within PGA1_c07510 at 776.527 kb on + strand, within PGA1_c07510 at 776.652 kb on + strand, within PGA1_c07510 at 776.687 kb on - strand, within PGA1_c07510 at 776.691 kb on - strand, within PGA1_c07510 at 776.691 kb on - strand, within PGA1_c07510 at 776.698 kb on - strand, within PGA1_c07510 at 776.728 kb on - strand, within PGA1_c07510 at 776.810 kb on + strand, within PGA1_c07510 at 776.862 kb on - strand, within PGA1_c07510 at 776.896 kb on + strand, within PGA1_c07510 at 777.007 kb on + strand, within PGA1_c07510 at 777.007 kb on + strand, within PGA1_c07510 at 777.153 kb on - strand, within PGA1_c07510 at 777.267 kb on + strand, within PGA1_c07510 at 777.270 kb on - strand, within PGA1_c07510 at 777.304 kb on + strand, within PGA1_c07510 at 777.310 kb on - strand, within PGA1_c07510 at 777.521 kb on - strand at 777.528 kb on - strand at 777.544 kb on - strand at 777.608 kb on - strand at 777.714 kb on - strand at 777.717 kb on - strand at 777.720 kb on + strand at 777.720 kb on + strand at 777.768 kb on - strand at 777.792 kb on - strand at 777.796 kb on - strand at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on + strand, within PGA1_c07520 at 777.900 kb on - strand, within PGA1_c07520 at 777.922 kb on + strand, within PGA1_c07520 at 777.930 kb on - strand, within PGA1_c07520 at 778.057 kb on + strand, within PGA1_c07520 at 778.060 kb on - strand, within PGA1_c07520 at 778.150 kb on - strand, within PGA1_c07520 at 778.184 kb on - strand at 778.633 kb on - strand at 778.650 kb on - strand at 778.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 773,797 + -1.1 773,805 - +1.0 773,817 - +2.7 773,913 + PGA1_c07490 0.40 +0.3 774,002 - PGA1_c07490 0.70 +1.6 774,069 + -1.9 774,086 + +1.4 774,107 - -3.4 774,166 + +1.7 774,172 + -0.0 774,172 + -1.2 774,174 - +3.2 774,180 - +1.5 774,180 - -1.9 774,180 - -0.2 774,180 - -1.3 774,213 - -2.7 774,229 + -2.0 774,229 + +1.2 774,237 - +1.5 774,247 - PGA1_c07500 0.11 +3.0 774,247 - PGA1_c07500 0.11 -1.8 774,310 + PGA1_c07500 0.22 +1.9 774,310 + PGA1_c07500 0.22 +1.0 774,310 + PGA1_c07500 0.22 +1.7 774,311 + PGA1_c07500 0.22 -2.4 774,318 - PGA1_c07500 0.23 +1.6 774,318 - PGA1_c07500 0.23 -1.4 774,338 + PGA1_c07500 0.27 -0.7 774,338 + PGA1_c07500 0.27 -2.0 774,341 - PGA1_c07500 0.27 -1.2 774,343 + PGA1_c07500 0.28 -1.7 774,356 - PGA1_c07500 0.30 +2.2 774,356 - PGA1_c07500 0.30 +2.2 774,362 + PGA1_c07500 0.31 +2.3 774,370 - PGA1_c07500 0.32 -2.0 774,373 + PGA1_c07500 0.33 +2.5 774,420 + PGA1_c07500 0.41 -2.5 774,462 - PGA1_c07500 0.49 +1.1 774,502 + PGA1_c07500 0.56 +2.6 774,502 + PGA1_c07500 0.56 -1.5 774,577 + PGA1_c07500 0.69 +3.6 774,585 - PGA1_c07500 0.70 -2.3 774,631 + PGA1_c07500 0.78 -2.1 774,631 + PGA1_c07500 0.78 +2.6 774,639 - PGA1_c07500 0.80 -1.1 774,661 - PGA1_c07500 0.84 +2.1 774,669 - PGA1_c07500 0.85 -2.2 774,676 + PGA1_c07500 0.86 +2.1 774,684 - PGA1_c07500 0.88 -2.6 774,727 + +1.5 774,742 - -1.8 774,742 - -2.9 774,749 + -0.3 774,781 - +0.1 774,828 + -0.3 774,831 - -0.3 774,837 - +0.4 774,849 + -1.9 774,897 + +1.2 774,956 - -0.0 774,979 - +2.5 775,020 - +2.6 775,037 - +0.7 775,045 + -1.5 775,045 + +2.3 775,064 - -0.5 775,098 - PGA1_c07510 0.10 +2.3 775,114 - PGA1_c07510 0.11 +1.7 775,114 - PGA1_c07510 0.11 -2.2 775,114 - PGA1_c07510 0.11 +1.6 775,119 - PGA1_c07510 0.11 -4.0 775,146 + PGA1_c07510 0.12 +3.2 775,218 + PGA1_c07510 0.14 -2.3 775,226 - PGA1_c07510 0.14 +2.5 775,226 - PGA1_c07510 0.14 +0.7 775,254 + PGA1_c07510 0.15 -0.9 775,258 + PGA1_c07510 0.15 +4.5 775,271 - PGA1_c07510 0.16 +3.3 775,282 - PGA1_c07510 0.16 +0.9 775,346 + PGA1_c07510 0.18 +1.5 775,386 + PGA1_c07510 0.20 -1.1 775,386 + PGA1_c07510 0.20 +0.8 775,386 + PGA1_c07510 0.20 -1.0 775,394 - PGA1_c07510 0.20 +1.0 775,433 - PGA1_c07510 0.21 -1.2 775,457 + PGA1_c07510 0.22 +3.3 775,499 + PGA1_c07510 0.23 -1.8 775,513 + PGA1_c07510 0.24 +2.5 775,527 + PGA1_c07510 0.24 +0.3 775,627 - PGA1_c07510 0.28 -2.4 775,670 + PGA1_c07510 0.29 -2.2 775,718 + PGA1_c07510 0.31 -0.1 775,741 + PGA1_c07510 0.31 +0.9 775,875 - PGA1_c07510 0.36 +2.8 775,875 - PGA1_c07510 0.36 +2.4 775,875 - PGA1_c07510 0.36 +0.5 775,890 + PGA1_c07510 0.36 +5.0 775,890 + PGA1_c07510 0.36 -2.7 775,890 + PGA1_c07510 0.36 -0.1 775,898 - PGA1_c07510 0.37 -2.7 775,933 - PGA1_c07510 0.38 -2.1 775,982 + PGA1_c07510 0.39 -0.8 775,982 + PGA1_c07510 0.39 +1.2 775,982 + PGA1_c07510 0.39 -0.7 775,982 + PGA1_c07510 0.39 -1.4 775,990 - PGA1_c07510 0.40 -2.0 775,990 - PGA1_c07510 0.40 -2.0 775,990 - PGA1_c07510 0.40 +1.3 775,990 - PGA1_c07510 0.40 -2.4 775,990 - PGA1_c07510 0.40 -0.1 775,990 - PGA1_c07510 0.40 +0.2 776,031 + PGA1_c07510 0.41 +0.7 776,048 + PGA1_c07510 0.41 +0.8 776,061 + PGA1_c07510 0.42 -2.8 776,069 - PGA1_c07510 0.42 -2.0 776,076 - PGA1_c07510 0.42 -1.7 776,090 + PGA1_c07510 0.43 -1.9 776,096 + PGA1_c07510 0.43 -2.6 776,101 + PGA1_c07510 0.43 +3.1 776,156 - PGA1_c07510 0.45 +2.1 776,158 + PGA1_c07510 0.45 -1.1 776,158 + PGA1_c07510 0.45 +2.6 776,158 + PGA1_c07510 0.45 -1.2 776,166 - PGA1_c07510 0.45 -1.5 776,172 + PGA1_c07510 0.46 +3.7 776,180 - PGA1_c07510 0.46 +1.6 776,188 - PGA1_c07510 0.46 -1.2 776,190 + PGA1_c07510 0.46 +2.6 776,191 + PGA1_c07510 0.46 +1.6 776,225 - PGA1_c07510 0.47 +0.8 776,258 - PGA1_c07510 0.48 +2.3 776,268 - PGA1_c07510 0.49 -1.1 776,290 - PGA1_c07510 0.50 +1.3 776,291 - PGA1_c07510 0.50 +3.5 776,292 - PGA1_c07510 0.50 +4.4 776,292 - PGA1_c07510 0.50 +5.2 776,336 - PGA1_c07510 0.51 -1.4 776,391 + PGA1_c07510 0.53 +3.4 776,399 - PGA1_c07510 0.53 +3.5 776,418 + PGA1_c07510 0.54 +3.0 776,470 + PGA1_c07510 0.55 +1.7 776,484 + PGA1_c07510 0.56 -1.2 776,484 + PGA1_c07510 0.56 -2.4 776,492 - PGA1_c07510 0.56 -1.5 776,492 - PGA1_c07510 0.56 +0.4 776,492 - PGA1_c07510 0.56 +3.8 776,492 - PGA1_c07510 0.56 +2.2 776,522 + PGA1_c07510 0.57 +2.2 776,522 + PGA1_c07510 0.57 +3.7 776,522 + PGA1_c07510 0.57 +1.1 776,527 + PGA1_c07510 0.57 +2.2 776,652 + PGA1_c07510 0.61 +1.5 776,687 - PGA1_c07510 0.63 +2.3 776,691 - PGA1_c07510 0.63 -1.1 776,691 - PGA1_c07510 0.63 +2.1 776,698 - PGA1_c07510 0.63 -1.8 776,728 - PGA1_c07510 0.64 +1.0 776,810 + PGA1_c07510 0.67 +2.7 776,862 - PGA1_c07510 0.68 +3.7 776,896 + PGA1_c07510 0.70 -0.3 777,007 + PGA1_c07510 0.73 +3.1 777,007 + PGA1_c07510 0.73 +1.5 777,153 - PGA1_c07510 0.78 -1.0 777,267 + PGA1_c07510 0.82 +0.7 777,270 - PGA1_c07510 0.82 +2.0 777,304 + PGA1_c07510 0.83 +2.7 777,310 - PGA1_c07510 0.83 +1.2 777,521 - -1.2 777,528 - +3.6 777,544 - +2.9 777,608 - +0.2 777,714 - +3.0 777,717 - +3.0 777,720 + -2.0 777,720 + +4.3 777,768 - +1.6 777,792 - +2.7 777,796 - +2.5 777,900 + PGA1_c07520 0.15 -0.1 777,900 + PGA1_c07520 0.15 -2.7 777,900 - PGA1_c07520 0.15 +3.0 777,922 + PGA1_c07520 0.21 -1.7 777,930 - PGA1_c07520 0.23 -2.5 778,057 + PGA1_c07520 0.58 +0.3 778,060 - PGA1_c07520 0.59 +2.9 778,150 - PGA1_c07520 0.83 +2.7 778,184 - -1.4 778,633 - +2.3 778,650 - +1.0 778,738 + -2.4
Or see this region's nucleotide sequence