Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07330 and PGA1_c07340 are separated by 8 nucleotides PGA1_c07340 and PGA1_c07350 overlap by 11 nucleotides PGA1_c07350 and PGA1_c07360 overlap by 4 nucleotides
PGA1_c07330: PGA1_c07330 - beta-galactosidase 1, at 754,733 to 756,652
_c07330
PGA1_c07340: PGA1_c07340 - Gluconolactonase, at 756,661 to 757,533
_c07340
PGA1_c07350: PGA1_c07350 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA, at 757,523 to 758,134
_c07350
PGA1_c07360: PGA1_c07360 - 2-dehydro-3-deoxygalactonokinase DgoK, at 758,131 to 759,108
_c07360
Position (kb) 756
757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 755.667 kb on + strand, within PGA1_c07330 at 755.692 kb on - strand, within PGA1_c07330 at 755.739 kb on + strand, within PGA1_c07330 at 755.811 kb on - strand, within PGA1_c07330 at 755.815 kb on + strand, within PGA1_c07330 at 755.875 kb on - strand, within PGA1_c07330 at 755.883 kb on + strand, within PGA1_c07330 at 755.883 kb on + strand, within PGA1_c07330 at 755.883 kb on + strand, within PGA1_c07330 at 755.891 kb on - strand, within PGA1_c07330 at 755.901 kb on - strand, within PGA1_c07330 at 756.013 kb on - strand, within PGA1_c07330 at 756.038 kb on - strand, within PGA1_c07330 at 756.040 kb on - strand, within PGA1_c07330 at 756.061 kb on - strand, within PGA1_c07330 at 756.107 kb on + strand, within PGA1_c07330 at 756.107 kb on + strand, within PGA1_c07330 at 756.115 kb on - strand, within PGA1_c07330 at 756.151 kb on + strand, within PGA1_c07330 at 756.159 kb on - strand, within PGA1_c07330 at 756.163 kb on + strand, within PGA1_c07330 at 756.164 kb on + strand, within PGA1_c07330 at 756.223 kb on - strand, within PGA1_c07330 at 756.298 kb on + strand, within PGA1_c07330 at 756.298 kb on + strand, within PGA1_c07330 at 756.301 kb on + strand, within PGA1_c07330 at 756.343 kb on + strand, within PGA1_c07330 at 756.351 kb on - strand, within PGA1_c07330 at 756.351 kb on - strand, within PGA1_c07330 at 756.418 kb on + strand, within PGA1_c07330 at 756.432 kb on - strand, within PGA1_c07330 at 756.481 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.599 kb on + strand at 756.624 kb on - strand at 756.640 kb on - strand at 756.640 kb on - strand at 756.640 kb on - strand at 756.647 kb on - strand at 756.657 kb on - strand at 756.715 kb on + strand at 756.715 kb on + strand at 756.715 kb on + strand at 756.735 kb on + strand at 756.823 kb on - strand, within PGA1_c07340 at 756.861 kb on - strand, within PGA1_c07340 at 756.888 kb on - strand, within PGA1_c07340 at 757.033 kb on - strand, within PGA1_c07340 at 757.222 kb on + strand, within PGA1_c07340 at 757.230 kb on - strand, within PGA1_c07340 at 757.230 kb on - strand, within PGA1_c07340 at 757.231 kb on - strand, within PGA1_c07340 at 757.258 kb on + strand, within PGA1_c07340 at 757.307 kb on + strand, within PGA1_c07340 at 757.315 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.320 kb on - strand, within PGA1_c07340 at 757.346 kb on + strand, within PGA1_c07340 at 757.381 kb on + strand, within PGA1_c07340 at 757.424 kb on - strand, within PGA1_c07340 at 757.495 kb on - strand at 757.591 kb on - strand, within PGA1_c07350 at 757.610 kb on - strand, within PGA1_c07350 at 757.610 kb on - strand, within PGA1_c07350 at 757.689 kb on + strand, within PGA1_c07350 at 757.798 kb on + strand, within PGA1_c07350 at 757.868 kb on - strand, within PGA1_c07350 at 757.940 kb on + strand, within PGA1_c07350 at 757.946 kb on - strand, within PGA1_c07350 at 757.946 kb on - strand, within PGA1_c07350 at 757.959 kb on - strand, within PGA1_c07350 at 758.044 kb on + strand, within PGA1_c07350 at 758.110 kb on + strand at 758.110 kb on + strand at 758.176 kb on - strand at 758.192 kb on - strand at 758.206 kb on + strand at 758.211 kb on + strand at 758.259 kb on + strand, within PGA1_c07360 at 758.259 kb on + strand, within PGA1_c07360 at 758.263 kb on + strand, within PGA1_c07360 at 758.354 kb on + strand, within PGA1_c07360 at 758.354 kb on + strand, within PGA1_c07360 at 758.360 kb on - strand, within PGA1_c07360 at 758.409 kb on + strand, within PGA1_c07360 at 758.427 kb on - strand, within PGA1_c07360
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 755,667 + PGA1_c07330 0.49 -2.4 755,692 - PGA1_c07330 0.50 -0.8 755,739 + PGA1_c07330 0.52 +2.6 755,811 - PGA1_c07330 0.56 +0.9 755,815 + PGA1_c07330 0.56 -0.8 755,875 - PGA1_c07330 0.59 +1.4 755,883 + PGA1_c07330 0.60 -1.8 755,883 + PGA1_c07330 0.60 +1.0 755,883 + PGA1_c07330 0.60 -3.1 755,891 - PGA1_c07330 0.60 -1.0 755,901 - PGA1_c07330 0.61 -1.8 756,013 - PGA1_c07330 0.67 -1.8 756,038 - PGA1_c07330 0.68 -1.5 756,040 - PGA1_c07330 0.68 +3.3 756,061 - PGA1_c07330 0.69 +1.1 756,107 + PGA1_c07330 0.72 +2.0 756,107 + PGA1_c07330 0.72 -1.2 756,115 - PGA1_c07330 0.72 +1.3 756,151 + PGA1_c07330 0.74 -0.8 756,159 - PGA1_c07330 0.74 +1.5 756,163 + PGA1_c07330 0.74 -1.3 756,164 + PGA1_c07330 0.75 +1.0 756,223 - PGA1_c07330 0.78 +2.6 756,298 + PGA1_c07330 0.82 +1.2 756,298 + PGA1_c07330 0.82 -2.6 756,301 + PGA1_c07330 0.82 +0.9 756,343 + PGA1_c07330 0.84 +0.8 756,351 - PGA1_c07330 0.84 +0.5 756,351 - PGA1_c07330 0.84 +2.1 756,418 + PGA1_c07330 0.88 +0.2 756,432 - PGA1_c07330 0.88 -1.9 756,481 + -1.6 756,557 + +1.8 756,557 + +2.3 756,557 + +0.4 756,599 + -1.0 756,624 - -1.6 756,640 - +3.5 756,640 - -1.5 756,640 - -1.6 756,647 - -2.4 756,657 - -0.5 756,715 + +2.0 756,715 + -1.5 756,715 + +0.1 756,735 + +1.6 756,823 - PGA1_c07340 0.19 -1.9 756,861 - PGA1_c07340 0.23 -1.2 756,888 - PGA1_c07340 0.26 +1.7 757,033 - PGA1_c07340 0.43 +1.9 757,222 + PGA1_c07340 0.64 -2.1 757,230 - PGA1_c07340 0.65 +1.4 757,230 - PGA1_c07340 0.65 +2.5 757,231 - PGA1_c07340 0.65 +0.4 757,258 + PGA1_c07340 0.68 +0.3 757,307 + PGA1_c07340 0.74 -2.8 757,315 - PGA1_c07340 0.75 +1.8 757,320 - PGA1_c07340 0.75 -0.1 757,320 - PGA1_c07340 0.75 +0.7 757,320 - PGA1_c07340 0.75 +1.4 757,346 + PGA1_c07340 0.78 -1.6 757,381 + PGA1_c07340 0.82 +2.3 757,424 - PGA1_c07340 0.87 -1.6 757,495 - -1.6 757,591 - PGA1_c07350 0.11 +1.5 757,610 - PGA1_c07350 0.14 +1.8 757,610 - PGA1_c07350 0.14 +1.2 757,689 + PGA1_c07350 0.27 -1.3 757,798 + PGA1_c07350 0.45 +4.6 757,868 - PGA1_c07350 0.56 -1.1 757,940 + PGA1_c07350 0.68 +0.8 757,946 - PGA1_c07350 0.69 -3.2 757,946 - PGA1_c07350 0.69 +1.6 757,959 - PGA1_c07350 0.71 +1.7 758,044 + PGA1_c07350 0.85 +3.3 758,110 + -0.3 758,110 + +0.7 758,176 - +2.2 758,192 - -1.5 758,206 + -1.5 758,211 + +4.2 758,259 + PGA1_c07360 0.13 -2.3 758,259 + PGA1_c07360 0.13 -2.8 758,263 + PGA1_c07360 0.13 -2.1 758,354 + PGA1_c07360 0.23 -0.7 758,354 + PGA1_c07360 0.23 +1.9 758,360 - PGA1_c07360 0.23 -0.0 758,409 + PGA1_c07360 0.28 +0.6 758,427 - PGA1_c07360 0.30 -0.2
Or see this region's nucleotide sequence