Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06140 and PGA1_c06150 are separated by 179 nucleotides PGA1_c06150 and PGA1_c06160 are separated by 150 nucleotides PGA1_c06160 and PGA1_c06170 are separated by 91 nucleotides PGA1_c06170 and PGA1_c06180 are separated by 354 nucleotides
PGA1_c06140: PGA1_c06140 - putative bacterial type II/III secretion system protein, at 628,380 to 629,834
_c06140
PGA1_c06150: PGA1_c06150 - Flp pilus assembly protein CpaB-like protein, at 630,014 to 630,874
_c06150
PGA1_c06160: PGA1_c06160 - hypothetical protein, at 631,025 to 631,201
_c06160
PGA1_c06170: PGA1_c06170 - hypothetical protein, at 631,293 to 631,478
_c06170
PGA1_c06180: PGA1_c06180 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 631,833 to 632,762
_c06180
Position (kb) 630
631 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 629.016 kb on - strand, within PGA1_c06140 at 629.053 kb on - strand, within PGA1_c06140 at 629.099 kb on - strand, within PGA1_c06140 at 629.128 kb on - strand, within PGA1_c06140 at 629.189 kb on + strand, within PGA1_c06140 at 629.214 kb on - strand, within PGA1_c06140 at 629.311 kb on - strand, within PGA1_c06140 at 629.353 kb on + strand, within PGA1_c06140 at 629.365 kb on + strand, within PGA1_c06140 at 629.378 kb on - strand, within PGA1_c06140 at 629.513 kb on + strand, within PGA1_c06140 at 629.513 kb on + strand, within PGA1_c06140 at 629.595 kb on - strand, within PGA1_c06140 at 629.668 kb on - strand, within PGA1_c06140 at 629.674 kb on + strand, within PGA1_c06140 at 629.762 kb on + strand at 629.809 kb on + strand at 629.845 kb on + strand at 629.883 kb on - strand at 629.911 kb on + strand at 629.914 kb on + strand at 629.943 kb on - strand at 630.036 kb on + strand at 630.046 kb on + strand at 630.054 kb on - strand at 630.062 kb on + strand at 630.070 kb on - strand at 630.080 kb on - strand at 630.080 kb on - strand at 630.105 kb on - strand, within PGA1_c06150 at 630.128 kb on - strand, within PGA1_c06150 at 630.134 kb on + strand, within PGA1_c06150 at 630.142 kb on - strand, within PGA1_c06150 at 630.246 kb on - strand, within PGA1_c06150 at 630.307 kb on + strand, within PGA1_c06150 at 630.322 kb on + strand, within PGA1_c06150 at 630.332 kb on + strand, within PGA1_c06150 at 630.337 kb on + strand, within PGA1_c06150 at 630.346 kb on - strand, within PGA1_c06150 at 630.413 kb on - strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.451 kb on + strand, within PGA1_c06150 at 630.485 kb on + strand, within PGA1_c06150 at 630.549 kb on - strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.571 kb on + strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.594 kb on - strand, within PGA1_c06150 at 630.674 kb on - strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.691 kb on - strand, within PGA1_c06150 at 630.707 kb on - strand, within PGA1_c06150 at 630.774 kb on + strand, within PGA1_c06150 at 630.830 kb on - strand at 630.835 kb on - strand at 630.863 kb on - strand at 630.863 kb on - strand at 630.884 kb on - strand at 630.890 kb on - strand at 630.961 kb on + strand at 630.963 kb on + strand at 631.018 kb on + strand at 631.021 kb on - strand at 631.026 kb on - strand at 631.044 kb on + strand, within PGA1_c06160 at 631.046 kb on + strand, within PGA1_c06160 at 631.085 kb on + strand, within PGA1_c06160 at 631.114 kb on - strand, within PGA1_c06160 at 631.147 kb on + strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.155 kb on - strand, within PGA1_c06160 at 631.194 kb on - strand at 631.215 kb on + strand at 631.280 kb on + strand at 631.315 kb on - strand, within PGA1_c06170 at 631.322 kb on + strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.330 kb on - strand, within PGA1_c06170 at 631.341 kb on + strand, within PGA1_c06170 at 631.389 kb on - strand, within PGA1_c06170 at 631.407 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.412 kb on + strand, within PGA1_c06170 at 631.420 kb on - strand, within PGA1_c06170 at 631.440 kb on + strand, within PGA1_c06170 at 631.478 kb on + strand at 631.480 kb on + strand at 631.486 kb on - strand at 631.488 kb on + strand at 631.488 kb on + strand at 631.496 kb on - strand at 631.539 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.544 kb on + strand at 631.552 kb on - strand at 631.552 kb on - strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.554 kb on + strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.557 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.562 kb on - strand at 631.567 kb on - strand at 631.568 kb on + strand at 631.569 kb on + strand at 631.569 kb on + strand at 631.576 kb on + strand at 631.576 kb on - strand at 631.576 kb on - strand at 631.591 kb on - strand at 631.593 kb on + strand at 631.610 kb on - strand at 631.610 kb on - strand at 631.624 kb on + strand at 631.632 kb on - strand at 631.634 kb on + strand at 631.634 kb on + strand at 631.642 kb on - strand at 631.673 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.721 kb on - strand at 631.730 kb on - strand at 631.845 kb on - strand at 631.865 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand at 631.870 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 629,016 - PGA1_c06140 0.44 +1.5 629,053 - PGA1_c06140 0.46 -1.9 629,099 - PGA1_c06140 0.49 -0.5 629,128 - PGA1_c06140 0.51 -1.8 629,189 + PGA1_c06140 0.56 -3.2 629,214 - PGA1_c06140 0.57 -2.0 629,311 - PGA1_c06140 0.64 -2.4 629,353 + PGA1_c06140 0.67 -1.5 629,365 + PGA1_c06140 0.68 -3.0 629,378 - PGA1_c06140 0.69 +1.2 629,513 + PGA1_c06140 0.78 -1.7 629,513 + PGA1_c06140 0.78 -2.4 629,595 - PGA1_c06140 0.84 -0.8 629,668 - PGA1_c06140 0.89 +1.1 629,674 + PGA1_c06140 0.89 -2.6 629,762 + +2.8 629,809 + +3.6 629,845 + -1.2 629,883 - -1.0 629,911 + -2.0 629,914 + -0.7 629,943 - -1.7 630,036 + +0.4 630,046 + -3.0 630,054 - +0.5 630,062 + -1.8 630,070 - +0.5 630,080 - -0.7 630,080 - -2.4 630,105 - PGA1_c06150 0.11 -1.7 630,128 - PGA1_c06150 0.13 -1.8 630,134 + PGA1_c06150 0.14 +1.9 630,142 - PGA1_c06150 0.15 +0.5 630,246 - PGA1_c06150 0.27 +1.5 630,307 + PGA1_c06150 0.34 -1.5 630,322 + PGA1_c06150 0.36 -1.7 630,332 + PGA1_c06150 0.37 -2.4 630,337 + PGA1_c06150 0.38 +1.0 630,346 - PGA1_c06150 0.39 +2.3 630,413 - PGA1_c06150 0.46 -0.4 630,439 + PGA1_c06150 0.49 -2.4 630,439 + PGA1_c06150 0.49 -0.8 630,451 + PGA1_c06150 0.51 +1.2 630,485 + PGA1_c06150 0.55 +1.1 630,549 - PGA1_c06150 0.62 -1.8 630,566 + PGA1_c06150 0.64 -1.9 630,566 + PGA1_c06150 0.64 -2.4 630,571 + PGA1_c06150 0.65 +1.1 630,574 - PGA1_c06150 0.65 +1.4 630,574 - PGA1_c06150 0.65 -2.0 630,594 - PGA1_c06150 0.67 +0.9 630,674 - PGA1_c06150 0.77 -2.5 630,683 + PGA1_c06150 0.78 +0.8 630,683 + PGA1_c06150 0.78 -2.4 630,691 - PGA1_c06150 0.79 -2.0 630,707 - PGA1_c06150 0.80 +1.1 630,774 + PGA1_c06150 0.88 -1.3 630,830 - +1.9 630,835 - -1.5 630,863 - -1.2 630,863 - +0.5 630,884 - +1.4 630,890 - +0.0 630,961 + -1.5 630,963 + +2.1 631,018 + +1.0 631,021 - -1.9 631,026 - -2.7 631,044 + PGA1_c06160 0.11 -2.2 631,046 + PGA1_c06160 0.12 -0.1 631,085 + PGA1_c06160 0.34 +0.9 631,114 - PGA1_c06160 0.50 +0.5 631,147 + PGA1_c06160 0.69 +3.6 631,155 - PGA1_c06160 0.73 -1.2 631,155 - PGA1_c06160 0.73 +2.1 631,155 - PGA1_c06160 0.73 -1.9 631,194 - -0.7 631,215 + -0.2 631,280 + -0.6 631,315 - PGA1_c06170 0.12 -1.8 631,322 + PGA1_c06170 0.16 -1.4 631,330 - PGA1_c06170 0.20 +0.1 631,330 - PGA1_c06170 0.20 +2.5 631,330 - PGA1_c06170 0.20 +1.9 631,341 + PGA1_c06170 0.26 +3.2 631,389 - PGA1_c06170 0.52 +0.1 631,407 + PGA1_c06170 0.61 +2.0 631,412 + PGA1_c06170 0.64 -1.0 631,412 + PGA1_c06170 0.64 +2.4 631,420 - PGA1_c06170 0.68 -1.2 631,440 + PGA1_c06170 0.79 +2.8 631,478 + +1.2 631,480 + -2.2 631,486 - +2.7 631,488 + -1.6 631,488 + -1.3 631,496 - +3.3 631,539 + -2.2 631,544 + -1.3 631,544 + +1.9 631,544 + -1.8 631,544 + -1.7 631,544 + -1.1 631,544 + +3.1 631,544 + +2.0 631,544 + -0.2 631,544 + -1.9 631,544 + +2.0 631,552 - +1.6 631,552 - -2.3 631,554 + -0.6 631,554 + +2.5 631,554 + -1.9 631,554 + -2.0 631,554 + -0.5 631,557 - -0.5 631,557 - -1.9 631,557 - -1.5 631,562 - +2.9 631,562 - +1.1 631,562 - -1.7 631,562 - +2.5 631,562 - -0.2 631,567 - +2.1 631,568 + -0.3 631,569 + -1.5 631,569 + -1.0 631,576 + +2.2 631,576 - +1.7 631,576 - -3.0 631,591 - +0.9 631,593 + +2.6 631,610 - +2.3 631,610 - -2.2 631,624 + +2.1 631,632 - +0.6 631,634 + -3.2 631,634 + +1.5 631,642 - +1.9 631,673 - -2.7 631,721 - -1.2 631,721 - +1.3 631,721 - +1.4 631,730 - +0.5 631,845 - -0.8 631,865 + -1.2 631,870 + +0.2 631,870 + -3.1 631,870 + -1.2
Or see this region's nucleotide sequence