Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06080 and PGA1_c06090 are separated by 3 nucleotides PGA1_c06090 and PGA1_c06100 are separated by 10 nucleotides PGA1_c06100 and PGA1_c06110 overlap by 1 nucleotides
PGA1_c06080: PGA1_c06080 - hypothetical protein, at 622,261 to 622,863
_c06080
PGA1_c06090: PGA1_c06090 - type II secretion system protein F-like protein, at 622,867 to 623,847
_c06090
PGA1_c06100: PGA1_c06100 - type II secretion system protein F-like protein, at 623,858 to 624,826
_c06100
PGA1_c06110: PGA1_c06110 - Flp pilus assembly protein, ATPase CpaF, at 624,826 to 626,271
_c06110
Position (kb) 623
624
625 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 622.895 kb on - strand at 622.900 kb on - strand at 622.905 kb on - strand at 622.918 kb on - strand at 622.941 kb on + strand at 622.949 kb on - strand at 623.007 kb on + strand, within PGA1_c06090 at 623.033 kb on + strand, within PGA1_c06090 at 623.033 kb on + strand, within PGA1_c06090 at 623.033 kb on + strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.041 kb on - strand, within PGA1_c06090 at 623.128 kb on - strand, within PGA1_c06090 at 623.153 kb on + strand, within PGA1_c06090 at 623.222 kb on - strand, within PGA1_c06090 at 623.244 kb on - strand, within PGA1_c06090 at 623.256 kb on + strand, within PGA1_c06090 at 623.292 kb on - strand, within PGA1_c06090 at 623.374 kb on + strand, within PGA1_c06090 at 623.381 kb on - strand, within PGA1_c06090 at 623.425 kb on + strand, within PGA1_c06090 at 623.456 kb on + strand, within PGA1_c06090 at 623.464 kb on - strand, within PGA1_c06090 at 623.466 kb on + strand, within PGA1_c06090 at 623.474 kb on - strand, within PGA1_c06090 at 623.487 kb on + strand, within PGA1_c06090 at 623.502 kb on + strand, within PGA1_c06090 at 623.567 kb on + strand, within PGA1_c06090 at 623.575 kb on - strand, within PGA1_c06090 at 623.577 kb on + strand, within PGA1_c06090 at 623.577 kb on + strand, within PGA1_c06090 at 623.640 kb on - strand, within PGA1_c06090 at 623.668 kb on + strand, within PGA1_c06090 at 623.671 kb on - strand, within PGA1_c06090 at 623.676 kb on - strand, within PGA1_c06090 at 623.724 kb on + strand, within PGA1_c06090 at 623.798 kb on + strand at 623.808 kb on - strand at 623.904 kb on - strand at 623.940 kb on + strand at 624.031 kb on + strand, within PGA1_c06100 at 624.054 kb on + strand, within PGA1_c06100 at 624.079 kb on + strand, within PGA1_c06100 at 624.099 kb on + strand, within PGA1_c06100 at 624.121 kb on + strand, within PGA1_c06100 at 624.160 kb on + strand, within PGA1_c06100 at 624.168 kb on + strand, within PGA1_c06100 at 624.285 kb on + strand, within PGA1_c06100 at 624.425 kb on + strand, within PGA1_c06100 at 624.478 kb on + strand, within PGA1_c06100 at 624.569 kb on + strand, within PGA1_c06100 at 624.617 kb on - strand, within PGA1_c06100 at 624.727 kb on - strand, within PGA1_c06100 at 624.751 kb on + strand at 624.767 kb on - strand at 624.786 kb on - strand at 624.808 kb on + strand at 624.821 kb on - strand at 624.879 kb on - strand at 625.064 kb on + strand, within PGA1_c06110 at 625.184 kb on + strand, within PGA1_c06110 at 625.283 kb on - strand, within PGA1_c06110 at 625.482 kb on - strand, within PGA1_c06110 at 625.511 kb on - strand, within PGA1_c06110 at 625.559 kb on - strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.576 kb on + strand, within PGA1_c06110 at 625.586 kb on + strand, within PGA1_c06110 at 625.597 kb on - strand, within PGA1_c06110 at 625.783 kb on + strand, within PGA1_c06110 at 625.795 kb on + strand, within PGA1_c06110
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 622,895 - -2.0 622,900 - -1.5 622,905 - -2.2 622,918 - -3.5 622,941 + -0.7 622,949 - +2.1 623,007 + PGA1_c06090 0.14 +2.5 623,033 + PGA1_c06090 0.17 -2.5 623,033 + PGA1_c06090 0.17 -0.5 623,033 + PGA1_c06090 0.17 -0.9 623,041 - PGA1_c06090 0.18 -0.2 623,041 - PGA1_c06090 0.18 -0.2 623,041 - PGA1_c06090 0.18 -2.0 623,041 - PGA1_c06090 0.18 +2.3 623,041 - PGA1_c06090 0.18 -1.8 623,128 - PGA1_c06090 0.27 -3.8 623,153 + PGA1_c06090 0.29 -2.0 623,222 - PGA1_c06090 0.36 -0.5 623,244 - PGA1_c06090 0.38 -2.0 623,256 + PGA1_c06090 0.40 -2.0 623,292 - PGA1_c06090 0.43 +3.1 623,374 + PGA1_c06090 0.52 +2.3 623,381 - PGA1_c06090 0.52 -0.7 623,425 + PGA1_c06090 0.57 +2.6 623,456 + PGA1_c06090 0.60 -1.8 623,464 - PGA1_c06090 0.61 +1.6 623,466 + PGA1_c06090 0.61 +0.4 623,474 - PGA1_c06090 0.62 +0.6 623,487 + PGA1_c06090 0.63 -2.5 623,502 + PGA1_c06090 0.65 -0.1 623,567 + PGA1_c06090 0.71 -1.4 623,575 - PGA1_c06090 0.72 -0.8 623,577 + PGA1_c06090 0.72 -2.2 623,577 + PGA1_c06090 0.72 -1.3 623,640 - PGA1_c06090 0.79 -0.2 623,668 + PGA1_c06090 0.82 +2.1 623,671 - PGA1_c06090 0.82 +1.8 623,676 - PGA1_c06090 0.82 +2.9 623,724 + PGA1_c06090 0.87 -3.0 623,798 + -1.5 623,808 - +1.6 623,904 - +1.3 623,940 + +1.7 624,031 + PGA1_c06100 0.18 -1.8 624,054 + PGA1_c06100 0.20 -1.1 624,079 + PGA1_c06100 0.23 -2.6 624,099 + PGA1_c06100 0.25 -2.5 624,121 + PGA1_c06100 0.27 -2.2 624,160 + PGA1_c06100 0.31 -1.2 624,168 + PGA1_c06100 0.32 -2.3 624,285 + PGA1_c06100 0.44 -0.1 624,425 + PGA1_c06100 0.59 +0.9 624,478 + PGA1_c06100 0.64 +2.8 624,569 + PGA1_c06100 0.73 +0.7 624,617 - PGA1_c06100 0.78 -3.6 624,727 - PGA1_c06100 0.90 -2.8 624,751 + +1.1 624,767 - -0.3 624,786 - +1.3 624,808 + -2.1 624,821 - +2.1 624,879 - -2.6 625,064 + PGA1_c06110 0.16 -1.3 625,184 + PGA1_c06110 0.25 -1.3 625,283 - PGA1_c06110 0.32 +2.1 625,482 - PGA1_c06110 0.45 -1.8 625,511 - PGA1_c06110 0.47 +3.2 625,559 - PGA1_c06110 0.51 -0.2 625,576 + PGA1_c06110 0.52 +2.3 625,576 + PGA1_c06110 0.52 +2.2 625,586 + PGA1_c06110 0.53 -1.4 625,597 - PGA1_c06110 0.53 -2.0 625,783 + PGA1_c06110 0.66 +2.0 625,795 + PGA1_c06110 0.67 +2.9
Or see this region's nucleotide sequence