Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05610

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c05590 and PGA1_c05600 are separated by 261 nucleotidesPGA1_c05600 and PGA1_c05610 overlap by 1 nucleotidesPGA1_c05610 and PGA1_c05620 overlap by 4 nucleotidesPGA1_c05620 and PGA1_c05630 are separated by 25 nucleotides PGA1_c05590: PGA1_c05590 - acyl-CoA dehydrogenase-like protein, at 572,698 to 573,936 _c05590 PGA1_c05600: PGA1_c05600 - queuosine biosynthesis protein QueC, at 574,198 to 574,896 _c05600 PGA1_c05610: PGA1_c05610 - putative queuosine biosynthesis protein QueD, at 574,896 to 575,249 _c05610 PGA1_c05620: PGA1_c05620 - putative 7-cyano-7-deazaguanosine biosynthesis protein QueE, at 575,246 to 576,043 _c05620 PGA1_c05630: PGA1_c05630 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 576,069 to 576,533 _c05630 Position (kb) 574 575 576Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 573.918 kb on - strandat 573.999 kb on + strandat 573.999 kb on + strandat 573.999 kb on + strandat 574.007 kb on - strandat 574.025 kb on - strandat 574.080 kb on + strandat 574.080 kb on + strandat 574.088 kb on - strandat 574.088 kb on - strandat 574.088 kb on - strandat 574.088 kb on - strandat 574.093 kb on - strandat 574.094 kb on - strandat 574.094 kb on - strandat 574.135 kb on - strandat 574.152 kb on + strandat 574.153 kb on - strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.272 kb on + strand, within PGA1_c05600at 574.295 kb on + strand, within PGA1_c05600at 574.295 kb on + strand, within PGA1_c05600at 574.295 kb on + strand, within PGA1_c05600at 574.357 kb on - strand, within PGA1_c05600at 574.448 kb on + strand, within PGA1_c05600at 574.451 kb on - strand, within PGA1_c05600at 574.467 kb on + strand, within PGA1_c05600at 574.467 kb on + strand, within PGA1_c05600at 574.467 kb on + strand, within PGA1_c05600at 574.474 kb on + strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.475 kb on - strand, within PGA1_c05600at 574.533 kb on + strand, within PGA1_c05600at 574.533 kb on + strand, within PGA1_c05600at 574.566 kb on - strand, within PGA1_c05600at 574.582 kb on + strand, within PGA1_c05600at 574.600 kb on + strand, within PGA1_c05600at 574.604 kb on + strand, within PGA1_c05600at 574.657 kb on - strand, within PGA1_c05600at 574.672 kb on + strand, within PGA1_c05600at 574.693 kb on + strand, within PGA1_c05600at 574.760 kb on - strand, within PGA1_c05600at 574.768 kb on + strand, within PGA1_c05600at 574.803 kb on + strand, within PGA1_c05600at 574.852 kb on + strandat 574.988 kb on + strand, within PGA1_c05610at 575.012 kb on + strand, within PGA1_c05610at 575.017 kb on + strand, within PGA1_c05610at 575.022 kb on + strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.030 kb on - strand, within PGA1_c05610at 575.035 kb on - strand, within PGA1_c05610at 575.059 kb on + strand, within PGA1_c05610at 575.106 kb on + strand, within PGA1_c05610at 575.124 kb on - strand, within PGA1_c05610at 575.139 kb on + strand, within PGA1_c05610at 575.139 kb on + strand, within PGA1_c05610at 575.139 kb on + strand, within PGA1_c05610at 575.147 kb on - strand, within PGA1_c05610at 575.147 kb on - strand, within PGA1_c05610at 575.187 kb on + strand, within PGA1_c05610at 575.237 kb on + strandat 575.322 kb on + strandat 575.377 kb on + strand, within PGA1_c05620at 575.408 kb on + strand, within PGA1_c05620at 575.432 kb on + strand, within PGA1_c05620at 575.433 kb on - strand, within PGA1_c05620at 575.465 kb on - strand, within PGA1_c05620at 575.465 kb on - strand, within PGA1_c05620at 575.520 kb on + strand, within PGA1_c05620at 575.520 kb on + strand, within PGA1_c05620at 575.525 kb on + strand, within PGA1_c05620at 575.617 kb on + strand, within PGA1_c05620at 575.617 kb on + strand, within PGA1_c05620at 575.617 kb on + strand, within PGA1_c05620at 575.651 kb on + strand, within PGA1_c05620at 575.671 kb on + strand, within PGA1_c05620at 575.684 kb on - strand, within PGA1_c05620at 575.702 kb on - strand, within PGA1_c05620at 575.761 kb on + strand, within PGA1_c05620at 575.761 kb on + strand, within PGA1_c05620at 575.779 kb on - strand, within PGA1_c05620at 575.822 kb on + strand, within PGA1_c05620at 575.884 kb on + strand, within PGA1_c05620at 575.890 kb on + strand, within PGA1_c05620at 575.979 kb on + strandat 575.987 kb on - strandat 576.016 kb on + strandat 576.070 kb on + strandat 576.101 kb on + strandat 576.109 kb on + strandat 576.117 kb on - strand, within PGA1_c05630at 576.117 kb on - strand, within PGA1_c05630at 576.117 kb on - strand, within PGA1_c05630at 576.117 kb on - strand, within PGA1_c05630at 576.117 kb on - strand, within PGA1_c05630at 576.117 kb on - strand, within PGA1_c05630at 576.122 kb on - strand, within PGA1_c05630at 576.122 kb on - strand, within PGA1_c05630at 576.138 kb on - strand, within PGA1_c05630at 576.148 kb on - strand, within PGA1_c05630at 576.174 kb on + strand, within PGA1_c05630at 576.226 kb on - strand, within PGA1_c05630at 576.226 kb on - strand, within PGA1_c05630at 576.239 kb on + strand, within PGA1_c05630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
remove
573,918 - +3.7
573,999 + +0.9
573,999 + +3.5
573,999 + -1.4
574,007 - +0.7
574,025 - -1.5
574,080 + +2.2
574,080 + +2.2
574,088 - -0.3
574,088 - +1.9
574,088 - +0.4
574,088 - -1.0
574,093 - -1.1
574,094 - -1.4
574,094 - -2.6
574,135 - -2.1
574,152 + +3.2
574,153 - +0.2
574,215 - -1.6
574,215 - +0.3
574,272 + PGA1_c05600 0.11 -0.8
574,295 + PGA1_c05600 0.14 +1.2
574,295 + PGA1_c05600 0.14 -1.5
574,295 + PGA1_c05600 0.14 -1.8
574,357 - PGA1_c05600 0.23 +1.6
574,448 + PGA1_c05600 0.36 +2.6
574,451 - PGA1_c05600 0.36 +0.6
574,467 + PGA1_c05600 0.38 +2.5
574,467 + PGA1_c05600 0.38 -0.7
574,467 + PGA1_c05600 0.38 +1.8
574,474 + PGA1_c05600 0.39 -2.6
574,475 - PGA1_c05600 0.40 -0.7
574,475 - PGA1_c05600 0.40 -1.8
574,475 - PGA1_c05600 0.40 -1.6
574,475 - PGA1_c05600 0.40 -0.4
574,533 + PGA1_c05600 0.48 +2.5
574,533 + PGA1_c05600 0.48 +0.0
574,566 - PGA1_c05600 0.53 -1.3
574,582 + PGA1_c05600 0.55 +1.6
574,600 + PGA1_c05600 0.58 -2.3
574,604 + PGA1_c05600 0.58 +2.1
574,657 - PGA1_c05600 0.66 -2.1
574,672 + PGA1_c05600 0.68 +2.0
574,693 + PGA1_c05600 0.71 -2.7
574,760 - PGA1_c05600 0.80 -1.6
574,768 + PGA1_c05600 0.82 +2.0
574,803 + PGA1_c05600 0.87 +0.7
574,852 + -2.8
574,988 + PGA1_c05610 0.26 -0.9
575,012 + PGA1_c05610 0.33 +2.7
575,017 + PGA1_c05610 0.34 +1.7
575,022 + PGA1_c05610 0.36 +2.3
575,030 - PGA1_c05610 0.38 -2.0
575,030 - PGA1_c05610 0.38 -1.8
575,030 - PGA1_c05610 0.38 -1.3
575,030 - PGA1_c05610 0.38 -1.7
575,035 - PGA1_c05610 0.39 +1.1
575,059 + PGA1_c05610 0.46 -1.3
575,106 + PGA1_c05610 0.59 -3.1
575,124 - PGA1_c05610 0.64 -1.3
575,139 + PGA1_c05610 0.69 +2.5
575,139 + PGA1_c05610 0.69 -0.7
575,139 + PGA1_c05610 0.69 +1.9
575,147 - PGA1_c05610 0.71 +1.7
575,147 - PGA1_c05610 0.71 +1.8
575,187 + PGA1_c05610 0.82 -1.7
575,237 + -1.7
575,322 + +2.3
575,377 + PGA1_c05620 0.16 +0.6
575,408 + PGA1_c05620 0.20 -1.9
575,432 + PGA1_c05620 0.23 +1.8
575,433 - PGA1_c05620 0.23 -1.4
575,465 - PGA1_c05620 0.27 +0.5
575,465 - PGA1_c05620 0.27 -1.5
575,520 + PGA1_c05620 0.34 +2.8
575,520 + PGA1_c05620 0.34 +2.8
575,525 + PGA1_c05620 0.35 +2.6
575,617 + PGA1_c05620 0.46 -0.1
575,617 + PGA1_c05620 0.46 +3.8
575,617 + PGA1_c05620 0.46 +0.9
575,651 + PGA1_c05620 0.51 -1.3
575,671 + PGA1_c05620 0.53 -0.4
575,684 - PGA1_c05620 0.55 +0.5
575,702 - PGA1_c05620 0.57 -1.3
575,761 + PGA1_c05620 0.65 +2.8
575,761 + PGA1_c05620 0.65 +2.4
575,779 - PGA1_c05620 0.67 -0.8
575,822 + PGA1_c05620 0.72 -2.5
575,884 + PGA1_c05620 0.80 -1.0
575,890 + PGA1_c05620 0.81 -1.7
575,979 + -0.3
575,987 - +1.2
576,016 + +3.0
576,070 + -2.0
576,101 + +3.2
576,109 + -0.3
576,117 - PGA1_c05630 0.10 -1.8
576,117 - PGA1_c05630 0.10 +2.2
576,117 - PGA1_c05630 0.10 +1.4
576,117 - PGA1_c05630 0.10 -0.8
576,117 - PGA1_c05630 0.10 -1.4
576,117 - PGA1_c05630 0.10 -2.5
576,122 - PGA1_c05630 0.11 -2.3
576,122 - PGA1_c05630 0.11 +3.1
576,138 - PGA1_c05630 0.15 -0.2
576,148 - PGA1_c05630 0.17 -2.6
576,174 + PGA1_c05630 0.23 -1.0
576,226 - PGA1_c05630 0.34 -0.3
576,226 - PGA1_c05630 0.34 -1.3
576,239 + PGA1_c05630 0.37 -1.3

Or see this region's nucleotide sequence