Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05550 and PGA1_c05560 are separated by 623 nucleotides
PGA1_c05550: PGA1_c05550 - glutamine synthase-like protein, at 567,125 to 568,576
_c05550
PGA1_c05560: PGA1_c05560 - glycine cleavage system protein GcvH, at 569,200 to 569,562
_c05560
Position (kb) 569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 568.242 kb on - strand, within PGA1_c05550 at 568.277 kb on + strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.321 kb on - strand, within PGA1_c05550 at 568.418 kb on + strand, within PGA1_c05550 at 568.440 kb on - strand at 568.446 kb on - strand at 568.464 kb on + strand at 568.466 kb on + strand at 568.474 kb on + strand at 568.487 kb on + strand at 568.496 kb on - strand at 568.501 kb on + strand at 568.504 kb on - strand at 568.507 kb on + strand at 568.515 kb on - strand at 568.515 kb on - strand at 568.533 kb on + strand at 568.541 kb on - strand at 568.776 kb on + strand at 568.783 kb on + strand at 568.790 kb on - strand at 568.808 kb on + strand at 568.829 kb on + strand at 568.837 kb on - strand at 568.845 kb on + strand at 568.874 kb on - strand at 568.892 kb on + strand at 568.892 kb on + strand at 568.900 kb on - strand at 568.931 kb on + strand at 568.999 kb on - strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.044 kb on + strand at 569.049 kb on + strand at 569.049 kb on + strand at 569.052 kb on - strand at 569.054 kb on + strand at 569.057 kb on - strand at 569.068 kb on + strand at 569.073 kb on + strand at 569.076 kb on - strand at 569.081 kb on - strand at 569.147 kb on + strand at 569.324 kb on + strand, within PGA1_c05560 at 569.366 kb on - strand, within PGA1_c05560 at 569.375 kb on - strand, within PGA1_c05560 at 569.469 kb on - strand, within PGA1_c05560 at 569.490 kb on + strand, within PGA1_c05560 at 569.498 kb on - strand, within PGA1_c05560 at 569.506 kb on - strand, within PGA1_c05560 at 569.573 kb on - strand at 569.652 kb on - strand at 569.739 kb on - strand at 569.880 kb on - strand at 569.964 kb on + strand at 569.972 kb on - strand at 570.030 kb on - strand at 570.034 kb on + strand at 570.041 kb on + strand at 570.071 kb on + strand at 570.071 kb on + strand at 570.076 kb on - strand at 570.079 kb on - strand at 570.171 kb on + strand at 570.236 kb on + strand at 570.249 kb on - strand at 570.285 kb on - strand at 570.308 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.331 kb on - strand at 570.418 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.420 kb on - strand at 570.505 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 568,242 - PGA1_c05550 0.77 +2.5 568,277 + PGA1_c05550 0.79 +1.9 568,321 - PGA1_c05550 0.82 -1.1 568,321 - PGA1_c05550 0.82 -1.2 568,418 + PGA1_c05550 0.89 -0.9 568,440 - -3.2 568,446 - +1.0 568,464 + +0.3 568,466 + -2.6 568,474 + -2.3 568,487 + +1.2 568,496 - -0.9 568,501 + -1.8 568,504 - -2.6 568,507 + +3.7 568,515 - -2.9 568,515 - +1.8 568,533 + -0.8 568,541 - -1.6 568,776 + +1.3 568,783 + +3.4 568,790 - +1.8 568,808 + +1.9 568,829 + -2.7 568,837 - +2.0 568,845 + +4.7 568,874 - +0.0 568,892 + +3.2 568,892 + +1.6 568,900 - -1.5 568,931 + +1.8 568,999 - -2.3 569,044 + +0.9 569,044 + -2.1 569,044 + +2.0 569,044 + +1.1 569,049 + -1.8 569,049 + +1.5 569,052 - -1.7 569,054 + +1.4 569,057 - -1.3 569,068 + -0.7 569,073 + +0.2 569,076 - -1.1 569,081 - -2.4 569,147 + +1.9 569,324 + PGA1_c05560 0.34 +3.5 569,366 - PGA1_c05560 0.46 +2.4 569,375 - PGA1_c05560 0.48 -1.8 569,469 - PGA1_c05560 0.74 -2.2 569,490 + PGA1_c05560 0.80 -1.5 569,498 - PGA1_c05560 0.82 +2.7 569,506 - PGA1_c05560 0.84 +1.8 569,573 - +2.3 569,652 - +0.9 569,739 - +2.2 569,880 - +0.3 569,964 + -1.7 569,972 - -2.2 570,030 - +1.8 570,034 + +0.1 570,041 + +0.2 570,071 + -1.6 570,071 + -0.5 570,076 - -0.9 570,079 - +2.0 570,171 + -3.1 570,236 + +3.0 570,249 - -2.4 570,285 - -1.0 570,308 - -0.4 570,331 - -1.9 570,331 - +1.4 570,331 - +1.4 570,418 - +1.3 570,420 - -0.6 570,420 - +0.7 570,420 - +3.5 570,505 + -0.7
Or see this region's nucleotide sequence