Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05400

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05380 and PGA1_c05390 are separated by 161 nucleotidesPGA1_c05390 and PGA1_c05400 are separated by 19 nucleotidesPGA1_c05400 and PGA1_c05410 overlap by 1 nucleotides PGA1_c05380: PGA1_c05380 - hypothetical protein, at 545,206 to 546,669 _c05380 PGA1_c05390: PGA1_c05390 - glycosyl transferase, at 546,831 to 547,583 _c05390 PGA1_c05400: PGA1_c05400 - putative glycosyl transferase, family 2, at 547,603 to 548,586 _c05400 PGA1_c05410: PGA1_c05410 - hypothetical protein, at 548,586 to 549,695 _c05410 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 546.612 kb on + strandat 546.612 kb on + strandat 546.612 kb on + strandat 546.612 kb on + strandat 546.620 kb on - strandat 546.620 kb on - strandat 546.642 kb on + strandat 546.642 kb on + strandat 546.649 kb on - strandat 546.650 kb on - strandat 546.652 kb on + strandat 546.686 kb on - strandat 546.795 kb on + strandat 546.838 kb on - strandat 546.861 kb on + strandat 546.861 kb on + strandat 546.957 kb on - strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 547.003 kb on - strand, within PGA1_c05390at 547.056 kb on - strand, within PGA1_c05390at 547.136 kb on + strand, within PGA1_c05390at 547.210 kb on + strand, within PGA1_c05390at 547.219 kb on - strand, within PGA1_c05390at 547.312 kb on + strand, within PGA1_c05390at 547.407 kb on + strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.512 kb on - strandat 547.520 kb on - strandat 547.536 kb on - strandat 547.569 kb on - strandat 547.580 kb on - strandat 547.585 kb on - strandat 547.675 kb on - strandat 547.695 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.826 kb on + strand, within PGA1_c05400at 547.826 kb on + strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.856 kb on + strand, within PGA1_c05400at 547.882 kb on + strand, within PGA1_c05400at 547.914 kb on - strand, within PGA1_c05400at 547.925 kb on - strand, within PGA1_c05400at 548.039 kb on - strand, within PGA1_c05400at 548.077 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.106 kb on - strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.234 kb on + strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.332 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.365 kb on - strand, within PGA1_c05400at 548.380 kb on - strand, within PGA1_c05400at 548.464 kb on + strand, within PGA1_c05400at 548.515 kb on - strandat 548.547 kb on - strandat 548.567 kb on + strandat 548.567 kb on + strandat 548.648 kb on + strandat 548.671 kb on + strandat 548.778 kb on + strand, within PGA1_c05410at 548.779 kb on + strand, within PGA1_c05410at 548.787 kb on - strand, within PGA1_c05410at 548.836 kb on - strand, within PGA1_c05410at 548.836 kb on - strand, within PGA1_c05410at 548.876 kb on + strand, within PGA1_c05410at 548.944 kb on - strand, within PGA1_c05410at 548.973 kb on - strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 548.989 kb on + strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.059 kb on - strand, within PGA1_c05410at 549.069 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.108 kb on - strand, within PGA1_c05410at 549.113 kb on - strand, within PGA1_c05410at 549.170 kb on + strand, within PGA1_c05410at 549.185 kb on + strand, within PGA1_c05410at 549.212 kb on + strand, within PGA1_c05410at 549.216 kb on + strand, within PGA1_c05410at 549.218 kb on + strand, within PGA1_c05410at 549.224 kb on - strand, within PGA1_c05410at 549.291 kb on - strand, within PGA1_c05410at 549.333 kb on + strand, within PGA1_c05410at 549.336 kb on - strand, within PGA1_c05410at 549.341 kb on - strand, within PGA1_c05410at 549.351 kb on - strand, within PGA1_c05410at 549.439 kb on - strand, within PGA1_c05410at 549.444 kb on + strand, within PGA1_c05410at 549.464 kb on - strand, within PGA1_c05410at 549.469 kb on - strand, within PGA1_c05410at 549.543 kb on - strand, within PGA1_c05410at 549.584 kb on - strand, within PGA1_c05410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
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546,612 + -1.8
546,612 + +1.1
546,612 + -2.0
546,612 + +1.4
546,620 - +0.8
546,620 - -2.3
546,642 + -1.0
546,642 + -1.4
546,649 - +3.7
546,650 - -1.5
546,652 + -0.9
546,686 - +1.4
546,795 + -0.8
546,838 - +1.8
546,861 + +2.0
546,861 + -2.9
546,957 - PGA1_c05390 0.17 +1.6
546,995 + PGA1_c05390 0.22 -2.2
546,995 + PGA1_c05390 0.22 -1.6
546,995 + PGA1_c05390 0.22 -1.2
547,003 - PGA1_c05390 0.23 +2.7
547,056 - PGA1_c05390 0.30 +2.2
547,136 + PGA1_c05390 0.41 +0.7
547,210 + PGA1_c05390 0.50 +0.9
547,219 - PGA1_c05390 0.52 -1.2
547,312 + PGA1_c05390 0.64 -2.0
547,407 + PGA1_c05390 0.76 -1.4
547,415 - PGA1_c05390 0.78 +2.6
547,415 - PGA1_c05390 0.78 -2.9
547,415 - PGA1_c05390 0.78 +2.0
547,512 - +4.2
547,520 - +3.6
547,536 - -1.4
547,569 - -0.7
547,580 - +0.9
547,585 - -1.3
547,675 - +3.4
547,695 - -2.0
547,700 - +1.5
547,700 - +2.1
547,700 - +2.2
547,826 + PGA1_c05400 0.23 +1.3
547,826 + PGA1_c05400 0.23 +2.2
547,834 - PGA1_c05400 0.23 +1.9
547,834 - PGA1_c05400 0.23 -1.7
547,856 + PGA1_c05400 0.26 +1.4
547,882 + PGA1_c05400 0.28 -1.6
547,914 - PGA1_c05400 0.32 -1.7
547,925 - PGA1_c05400 0.33 +3.5
548,039 - PGA1_c05400 0.44 -1.4
548,077 + PGA1_c05400 0.48 -2.0
548,079 + PGA1_c05400 0.48 +3.4
548,079 + PGA1_c05400 0.48 +1.9
548,085 - PGA1_c05400 0.49 -1.5
548,085 - PGA1_c05400 0.49 +1.5
548,087 - PGA1_c05400 0.49 +1.0
548,087 - PGA1_c05400 0.49 +3.2
548,106 - PGA1_c05400 0.51 +2.0
548,119 + PGA1_c05400 0.52 +3.6
548,119 + PGA1_c05400 0.52 -1.8
548,234 + PGA1_c05400 0.64 -0.7
548,242 - PGA1_c05400 0.65 +2.9
548,242 - PGA1_c05400 0.65 +4.3
548,242 - PGA1_c05400 0.65 -0.4
548,242 - PGA1_c05400 0.65 -1.2
548,242 - PGA1_c05400 0.65 +2.7
548,329 + PGA1_c05400 0.74 +3.1
548,329 + PGA1_c05400 0.74 +2.4
548,332 - PGA1_c05400 0.74 -1.9
548,337 - PGA1_c05400 0.75 +1.0
548,337 - PGA1_c05400 0.75 +2.0
548,357 + PGA1_c05400 0.77 +4.0
548,357 + PGA1_c05400 0.77 -2.9
548,365 - PGA1_c05400 0.77 -2.0
548,380 - PGA1_c05400 0.79 -0.6
548,464 + PGA1_c05400 0.88 -1.7
548,515 - -0.8
548,547 - +0.2
548,567 + +1.8
548,567 + -0.3
548,648 + +3.7
548,671 + +2.3
548,778 + PGA1_c05410 0.17 -1.8
548,779 + PGA1_c05410 0.17 -2.0
548,787 - PGA1_c05410 0.18 -2.8
548,836 - PGA1_c05410 0.23 -1.5
548,836 - PGA1_c05410 0.23 -2.0
548,876 + PGA1_c05410 0.26 +2.6
548,944 - PGA1_c05410 0.32 +4.2
548,973 - PGA1_c05410 0.35 -0.5
548,989 + PGA1_c05410 0.36 +1.4
548,989 + PGA1_c05410 0.36 +2.9
549,059 - PGA1_c05410 0.43 +4.0
549,059 - PGA1_c05410 0.43 -1.1
549,069 - PGA1_c05410 0.44 +2.7
549,108 - PGA1_c05410 0.47 +1.3
549,108 - PGA1_c05410 0.47 +2.8
549,108 - PGA1_c05410 0.47 +1.9
549,113 - PGA1_c05410 0.47 +1.9
549,170 + PGA1_c05410 0.53 -1.1
549,185 + PGA1_c05410 0.54 +0.9
549,212 + PGA1_c05410 0.56 +2.0
549,216 + PGA1_c05410 0.57 -1.8
549,218 + PGA1_c05410 0.57 +3.6
549,224 - PGA1_c05410 0.57 +1.7
549,291 - PGA1_c05410 0.64 +2.8
549,333 + PGA1_c05410 0.67 -1.3
549,336 - PGA1_c05410 0.68 +3.1
549,341 - PGA1_c05410 0.68 +1.4
549,351 - PGA1_c05410 0.69 -1.9
549,439 - PGA1_c05410 0.77 +1.7
549,444 + PGA1_c05410 0.77 +2.2
549,464 - PGA1_c05410 0.79 +3.4
549,469 - PGA1_c05410 0.80 +0.4
549,543 - PGA1_c05410 0.86 +3.0
549,584 - PGA1_c05410 0.90 -0.3

Or see this region's nucleotide sequence