Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05350

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05330 and PGA1_c05340 overlap by 4 nucleotidesPGA1_c05340 and PGA1_c05350 overlap by 4 nucleotidesPGA1_c05350 and PGA1_c05360 overlap by 4 nucleotides PGA1_c05330: PGA1_c05330 - hypothetical protein, at 531,144 to 532,046 _c05330 PGA1_c05340: PGA1_c05340 - 4'-phosphopantetheinyl transferase-like protein, at 532,043 to 532,756 _c05340 PGA1_c05350: PGA1_c05350 - dimodular nonribosomal peptide synthetase, at 532,753 to 537,387 _c05350 PGA1_c05360: PGA1_c05360 - putative glycosyl transferase, at 537,384 to 538,454 _c05360 Position (kb) 532 533 534 535 536 537 538Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 531.801 kb on + strand, within PGA1_c05330at 531.840 kb on - strand, within PGA1_c05330at 531.902 kb on + strand, within PGA1_c05330at 531.931 kb on - strand, within PGA1_c05330at 531.960 kb on + strandat 531.982 kb on - strandat 532.017 kb on - strandat 532.782 kb on + strandat 532.865 kb on + strandat 532.905 kb on + strandat 532.995 kb on - strandat 533.035 kb on - strandat 533.046 kb on - strandat 533.249 kb on + strand, within PGA1_c05350at 533.249 kb on + strand, within PGA1_c05350at 533.249 kb on + strand, within PGA1_c05350at 533.251 kb on + strand, within PGA1_c05350at 533.257 kb on - strand, within PGA1_c05350at 533.257 kb on - strand, within PGA1_c05350at 533.259 kb on - strand, within PGA1_c05350at 533.259 kb on - strand, within PGA1_c05350at 533.396 kb on - strand, within PGA1_c05350at 533.454 kb on + strand, within PGA1_c05350at 533.454 kb on + strand, within PGA1_c05350at 533.586 kb on + strand, within PGA1_c05350at 533.636 kb on + strand, within PGA1_c05350at 533.654 kb on + strand, within PGA1_c05350at 533.719 kb on + strand, within PGA1_c05350at 533.748 kb on + strand, within PGA1_c05350at 533.781 kb on + strand, within PGA1_c05350at 533.828 kb on + strand, within PGA1_c05350at 533.893 kb on - strand, within PGA1_c05350at 533.916 kb on + strand, within PGA1_c05350at 534.018 kb on + strand, within PGA1_c05350at 534.100 kb on - strand, within PGA1_c05350at 534.139 kb on - strand, within PGA1_c05350at 534.139 kb on - strand, within PGA1_c05350at 534.148 kb on - strand, within PGA1_c05350at 534.149 kb on - strand, within PGA1_c05350at 534.175 kb on + strand, within PGA1_c05350at 534.193 kb on - strand, within PGA1_c05350at 534.225 kb on - strand, within PGA1_c05350at 534.271 kb on - strand, within PGA1_c05350at 534.386 kb on - strand, within PGA1_c05350at 534.413 kb on - strand, within PGA1_c05350at 534.469 kb on + strand, within PGA1_c05350at 534.477 kb on - strand, within PGA1_c05350at 534.589 kb on + strand, within PGA1_c05350at 534.597 kb on - strand, within PGA1_c05350at 534.633 kb on + strand, within PGA1_c05350at 534.660 kb on + strand, within PGA1_c05350at 534.674 kb on - strand, within PGA1_c05350at 534.679 kb on - strand, within PGA1_c05350at 534.679 kb on - strand, within PGA1_c05350at 534.679 kb on - strand, within PGA1_c05350at 534.748 kb on + strand, within PGA1_c05350at 534.826 kb on - strand, within PGA1_c05350at 534.831 kb on + strand, within PGA1_c05350at 534.857 kb on - strand, within PGA1_c05350at 534.947 kb on + strand, within PGA1_c05350at 534.989 kb on + strand, within PGA1_c05350at 534.989 kb on + strand, within PGA1_c05350at 534.989 kb on + strand, within PGA1_c05350at 535.002 kb on + strand, within PGA1_c05350at 535.030 kb on - strand, within PGA1_c05350at 535.042 kb on + strand, within PGA1_c05350at 535.115 kb on + strand, within PGA1_c05350at 535.118 kb on - strand, within PGA1_c05350at 535.139 kb on - strand, within PGA1_c05350at 535.151 kb on + strand, within PGA1_c05350at 535.151 kb on + strand, within PGA1_c05350at 535.151 kb on + strand, within PGA1_c05350at 535.151 kb on + strand, within PGA1_c05350at 535.151 kb on + strand, within PGA1_c05350at 535.159 kb on - strand, within PGA1_c05350at 535.159 kb on - strand, within PGA1_c05350at 535.159 kb on - strand, within PGA1_c05350at 535.159 kb on - strand, within PGA1_c05350at 535.159 kb on - strand, within PGA1_c05350at 535.294 kb on - strand, within PGA1_c05350at 535.335 kb on + strand, within PGA1_c05350at 535.335 kb on - strand, within PGA1_c05350at 535.404 kb on + strand, within PGA1_c05350at 535.426 kb on + strand, within PGA1_c05350at 535.458 kb on + strand, within PGA1_c05350at 535.491 kb on - strand, within PGA1_c05350at 535.508 kb on + strand, within PGA1_c05350at 535.511 kb on - strand, within PGA1_c05350at 535.617 kb on + strand, within PGA1_c05350at 535.687 kb on + strand, within PGA1_c05350at 535.689 kb on - strand, within PGA1_c05350at 535.689 kb on - strand, within PGA1_c05350at 535.689 kb on - strand, within PGA1_c05350at 535.724 kb on - strand, within PGA1_c05350at 535.780 kb on - strand, within PGA1_c05350at 535.800 kb on - strand, within PGA1_c05350at 535.870 kb on + strand, within PGA1_c05350at 535.900 kb on + strand, within PGA1_c05350at 535.957 kb on - strand, within PGA1_c05350at 536.127 kb on + strand, within PGA1_c05350at 536.130 kb on - strand, within PGA1_c05350at 536.163 kb on - strand, within PGA1_c05350at 536.176 kb on + strand, within PGA1_c05350at 536.248 kb on + strand, within PGA1_c05350at 536.273 kb on - strand, within PGA1_c05350at 536.273 kb on - strand, within PGA1_c05350at 536.280 kb on + strand, within PGA1_c05350at 536.280 kb on + strand, within PGA1_c05350at 536.288 kb on - strand, within PGA1_c05350at 536.328 kb on + strand, within PGA1_c05350at 536.428 kb on - strand, within PGA1_c05350at 536.557 kb on + strand, within PGA1_c05350at 536.643 kb on - strand, within PGA1_c05350at 536.669 kb on + strand, within PGA1_c05350at 536.669 kb on + strand, within PGA1_c05350at 536.731 kb on - strand, within PGA1_c05350at 536.751 kb on + strand, within PGA1_c05350at 536.825 kb on + strand, within PGA1_c05350at 536.877 kb on + strand, within PGA1_c05350at 536.923 kb on + strand, within PGA1_c05350at 536.938 kb on + strandat 536.963 kb on + strandat 537.012 kb on + strandat 537.020 kb on - strandat 537.041 kb on + strandat 537.062 kb on + strandat 537.062 kb on + strandat 537.081 kb on - strandat 537.086 kb on - strandat 537.087 kb on - strandat 537.101 kb on - strandat 537.230 kb on + strandat 537.241 kb on + strandat 537.250 kb on - strandat 537.366 kb on + strandat 537.381 kb on - strandat 537.395 kb on + strandat 537.470 kb on - strandat 537.519 kb on - strand, within PGA1_c05360at 537.524 kb on + strand, within PGA1_c05360at 537.538 kb on + strand, within PGA1_c05360at 537.538 kb on + strand, within PGA1_c05360at 537.593 kb on + strand, within PGA1_c05360at 537.636 kb on + strand, within PGA1_c05360at 537.644 kb on - strand, within PGA1_c05360at 537.687 kb on - strand, within PGA1_c05360at 537.718 kb on - strand, within PGA1_c05360at 537.720 kb on + strand, within PGA1_c05360at 537.742 kb on + strand, within PGA1_c05360at 537.742 kb on + strand, within PGA1_c05360at 537.750 kb on - strand, within PGA1_c05360at 537.785 kb on + strand, within PGA1_c05360at 537.793 kb on - strand, within PGA1_c05360at 537.844 kb on + strand, within PGA1_c05360at 537.857 kb on + strand, within PGA1_c05360at 537.868 kb on + strand, within PGA1_c05360at 537.919 kb on - strand, within PGA1_c05360at 538.004 kb on + strand, within PGA1_c05360at 538.012 kb on - strand, within PGA1_c05360at 538.012 kb on - strand, within PGA1_c05360at 538.012 kb on - strand, within PGA1_c05360at 538.027 kb on - strand, within PGA1_c05360at 538.027 kb on - strand, within PGA1_c05360at 538.074 kb on - strand, within PGA1_c05360at 538.093 kb on - strand, within PGA1_c05360at 538.102 kb on + strand, within PGA1_c05360at 538.141 kb on - strand, within PGA1_c05360at 538.209 kb on + strand, within PGA1_c05360at 538.237 kb on + strand, within PGA1_c05360at 538.297 kb on - strand, within PGA1_c05360at 538.315 kb on - strand, within PGA1_c05360at 538.333 kb on + strand, within PGA1_c05360at 538.338 kb on + strand, within PGA1_c05360at 538.341 kb on - strand, within PGA1_c05360at 538.347 kb on + strand, within PGA1_c05360at 538.355 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
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531,801 + PGA1_c05330 0.73 -0.3
531,840 - PGA1_c05330 0.77 -0.3
531,902 + PGA1_c05330 0.84 +2.7
531,931 - PGA1_c05330 0.87 +0.4
531,960 + -2.5
531,982 - -1.5
532,017 - -2.3
532,782 + +2.4
532,865 + -0.9
532,905 + +1.5
532,995 - +2.9
533,035 - +3.2
533,046 - +1.4
533,249 + PGA1_c05350 0.11 -0.6
533,249 + PGA1_c05350 0.11 +2.9
533,249 + PGA1_c05350 0.11 +2.1
533,251 + PGA1_c05350 0.11 +1.9
533,257 - PGA1_c05350 0.11 +3.0
533,257 - PGA1_c05350 0.11 -1.8
533,259 - PGA1_c05350 0.11 -1.8
533,259 - PGA1_c05350 0.11 -0.3
533,396 - PGA1_c05350 0.14 +0.7
533,454 + PGA1_c05350 0.15 +1.5
533,454 + PGA1_c05350 0.15 +2.6
533,586 + PGA1_c05350 0.18 +1.3
533,636 + PGA1_c05350 0.19 +1.7
533,654 + PGA1_c05350 0.19 -2.0
533,719 + PGA1_c05350 0.21 +2.7
533,748 + PGA1_c05350 0.21 +1.1
533,781 + PGA1_c05350 0.22 +1.3
533,828 + PGA1_c05350 0.23 +2.1
533,893 - PGA1_c05350 0.25 +1.9
533,916 + PGA1_c05350 0.25 +3.0
534,018 + PGA1_c05350 0.27 -0.6
534,100 - PGA1_c05350 0.29 -1.2
534,139 - PGA1_c05350 0.30 +2.3
534,139 - PGA1_c05350 0.30 +1.9
534,148 - PGA1_c05350 0.30 +0.5
534,149 - PGA1_c05350 0.30 -2.0
534,175 + PGA1_c05350 0.31 -1.8
534,193 - PGA1_c05350 0.31 +1.8
534,225 - PGA1_c05350 0.32 -0.8
534,271 - PGA1_c05350 0.33 +3.8
534,386 - PGA1_c05350 0.35 +2.6
534,413 - PGA1_c05350 0.36 +0.3
534,469 + PGA1_c05350 0.37 -1.6
534,477 - PGA1_c05350 0.37 +2.0
534,589 + PGA1_c05350 0.40 +0.8
534,597 - PGA1_c05350 0.40 -2.4
534,633 + PGA1_c05350 0.41 -1.9
534,660 + PGA1_c05350 0.41 +1.2
534,674 - PGA1_c05350 0.41 +2.9
534,679 - PGA1_c05350 0.42 +2.8
534,679 - PGA1_c05350 0.42 -0.6
534,679 - PGA1_c05350 0.42 -1.6
534,748 + PGA1_c05350 0.43 -1.6
534,826 - PGA1_c05350 0.45 +3.2
534,831 + PGA1_c05350 0.45 -1.6
534,857 - PGA1_c05350 0.45 -2.0
534,947 + PGA1_c05350 0.47 +0.3
534,989 + PGA1_c05350 0.48 +1.5
534,989 + PGA1_c05350 0.48 +0.3
534,989 + PGA1_c05350 0.48 +3.7
535,002 + PGA1_c05350 0.49 +1.3
535,030 - PGA1_c05350 0.49 +1.9
535,042 + PGA1_c05350 0.49 +1.5
535,115 + PGA1_c05350 0.51 -1.4
535,118 - PGA1_c05350 0.51 -1.1
535,139 - PGA1_c05350 0.51 +2.1
535,151 + PGA1_c05350 0.52 +2.7
535,151 + PGA1_c05350 0.52 -2.0
535,151 + PGA1_c05350 0.52 +2.4
535,151 + PGA1_c05350 0.52 +3.7
535,151 + PGA1_c05350 0.52 -0.6
535,159 - PGA1_c05350 0.52 +3.4
535,159 - PGA1_c05350 0.52 -0.8
535,159 - PGA1_c05350 0.52 +0.7
535,159 - PGA1_c05350 0.52 -1.7
535,159 - PGA1_c05350 0.52 +2.1
535,294 - PGA1_c05350 0.55 +4.5
535,335 + PGA1_c05350 0.56 +1.0
535,335 - PGA1_c05350 0.56 -0.8
535,404 + PGA1_c05350 0.57 +0.9
535,426 + PGA1_c05350 0.58 +1.6
535,458 + PGA1_c05350 0.58 -2.3
535,491 - PGA1_c05350 0.59 +2.5
535,508 + PGA1_c05350 0.59 +1.5
535,511 - PGA1_c05350 0.60 -0.1
535,617 + PGA1_c05350 0.62 +2.6
535,687 + PGA1_c05350 0.63 +0.4
535,689 - PGA1_c05350 0.63 +3.3
535,689 - PGA1_c05350 0.63 +0.5
535,689 - PGA1_c05350 0.63 +3.0
535,724 - PGA1_c05350 0.64 +1.9
535,780 - PGA1_c05350 0.65 -1.7
535,800 - PGA1_c05350 0.66 +2.9
535,870 + PGA1_c05350 0.67 -2.0
535,900 + PGA1_c05350 0.68 -2.4
535,957 - PGA1_c05350 0.69 +2.5
536,127 + PGA1_c05350 0.73 +2.4
536,130 - PGA1_c05350 0.73 +1.8
536,163 - PGA1_c05350 0.74 -1.1
536,176 + PGA1_c05350 0.74 +1.5
536,248 + PGA1_c05350 0.75 -1.9
536,273 - PGA1_c05350 0.76 +0.5
536,273 - PGA1_c05350 0.76 +1.8
536,280 + PGA1_c05350 0.76 -1.2
536,280 + PGA1_c05350 0.76 -1.6
536,288 - PGA1_c05350 0.76 +1.0
536,328 + PGA1_c05350 0.77 +1.4
536,428 - PGA1_c05350 0.79 -1.9
536,557 + PGA1_c05350 0.82 -2.2
536,643 - PGA1_c05350 0.84 +2.9
536,669 + PGA1_c05350 0.84 +1.3
536,669 + PGA1_c05350 0.84 -1.0
536,731 - PGA1_c05350 0.86 -2.2
536,751 + PGA1_c05350 0.86 -1.2
536,825 + PGA1_c05350 0.88 +0.9
536,877 + PGA1_c05350 0.89 +1.6
536,923 + PGA1_c05350 0.90 +1.8
536,938 + +2.3
536,963 + +2.3
537,012 + +3.2
537,020 - +1.2
537,041 + +0.6
537,062 + +2.8
537,062 + +0.9
537,081 - +1.2
537,086 - +2.9
537,087 - +3.9
537,101 - -2.6
537,230 + +3.2
537,241 + -2.4
537,250 - +1.8
537,366 + -1.3
537,381 - +1.6
537,395 + +0.7
537,470 - +1.7
537,519 - PGA1_c05360 0.13 +2.5
537,524 + PGA1_c05360 0.13 +0.8
537,538 + PGA1_c05360 0.14 +4.3
537,538 + PGA1_c05360 0.14 -1.5
537,593 + PGA1_c05360 0.20 +3.4
537,636 + PGA1_c05360 0.24 -1.4
537,644 - PGA1_c05360 0.24 -1.3
537,687 - PGA1_c05360 0.28 -2.7
537,718 - PGA1_c05360 0.31 -1.1
537,720 + PGA1_c05360 0.31 +1.5
537,742 + PGA1_c05360 0.33 +2.1
537,742 + PGA1_c05360 0.33 +3.0
537,750 - PGA1_c05360 0.34 -1.9
537,785 + PGA1_c05360 0.37 +3.7
537,793 - PGA1_c05360 0.38 +0.2
537,844 + PGA1_c05360 0.43 +2.3
537,857 + PGA1_c05360 0.44 +3.5
537,868 + PGA1_c05360 0.45 +3.7
537,919 - PGA1_c05360 0.50 +1.2
538,004 + PGA1_c05360 0.58 -1.0
538,012 - PGA1_c05360 0.59 -1.9
538,012 - PGA1_c05360 0.59 +1.6
538,012 - PGA1_c05360 0.59 +2.6
538,027 - PGA1_c05360 0.60 +1.5
538,027 - PGA1_c05360 0.60 +1.3
538,074 - PGA1_c05360 0.64 -1.8
538,093 - PGA1_c05360 0.66 +3.0
538,102 + PGA1_c05360 0.67 -0.4
538,141 - PGA1_c05360 0.71 +1.5
538,209 + PGA1_c05360 0.77 -2.8
538,237 + PGA1_c05360 0.80 -1.7
538,297 - PGA1_c05360 0.85 -2.0
538,315 - PGA1_c05360 0.87 +0.6
538,333 + PGA1_c05360 0.89 -2.2
538,338 + PGA1_c05360 0.89 -1.9
538,341 - PGA1_c05360 0.89 -1.4
538,347 + PGA1_c05360 0.90 +2.7
538,355 + +1.4

Or see this region's nucleotide sequence