Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05270 and PGA1_c05280 are separated by 72 nucleotides PGA1_c05280 and PGA1_c05290 are separated by 33 nucleotides
PGA1_c05270: PGA1_c05270 - ATPases involved in chromosome partitioning, at 522,527 to 523,600
_c05270
PGA1_c05280: PGA1_c05280 - hypothetical protein, at 523,673 to 524,959
_c05280
PGA1_c05290: PGA1_c05290 - polysaccharide biosynthesis protein ExoT-like protein, at 524,993 to 526,357
_c05290
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 522.859 kb on + strand, within PGA1_c05270 at 522.867 kb on - strand, within PGA1_c05270 at 522.907 kb on + strand, within PGA1_c05270 at 522.907 kb on + strand, within PGA1_c05270 at 522.954 kb on - strand, within PGA1_c05270 at 522.960 kb on - strand, within PGA1_c05270 at 522.961 kb on + strand, within PGA1_c05270 at 522.987 kb on + strand, within PGA1_c05270 at 522.987 kb on + strand, within PGA1_c05270 at 523.029 kb on + strand, within PGA1_c05270 at 523.029 kb on + strand, within PGA1_c05270 at 523.029 kb on + strand, within PGA1_c05270 at 523.037 kb on + strand, within PGA1_c05270 at 523.037 kb on - strand, within PGA1_c05270 at 523.037 kb on - strand, within PGA1_c05270 at 523.037 kb on - strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.148 kb on + strand, within PGA1_c05270 at 523.156 kb on - strand, within PGA1_c05270 at 523.156 kb on - strand, within PGA1_c05270 at 523.251 kb on - strand, within PGA1_c05270 at 523.256 kb on + strand, within PGA1_c05270 at 523.264 kb on - strand, within PGA1_c05270 at 523.344 kb on + strand, within PGA1_c05270 at 523.363 kb on - strand, within PGA1_c05270 at 523.367 kb on + strand, within PGA1_c05270 at 523.370 kb on - strand, within PGA1_c05270 at 523.377 kb on - strand, within PGA1_c05270 at 523.458 kb on + strand, within PGA1_c05270 at 523.458 kb on - strand, within PGA1_c05270 at 523.460 kb on + strand, within PGA1_c05270 at 523.501 kb on - strand at 523.537 kb on - strand at 523.548 kb on + strand at 523.572 kb on + strand at 523.572 kb on + strand at 523.577 kb on + strand at 523.580 kb on - strand at 523.612 kb on + strand at 523.614 kb on + strand at 523.619 kb on + strand at 523.664 kb on + strand at 523.676 kb on + strand at 523.681 kb on + strand at 523.689 kb on - strand at 523.707 kb on - strand at 523.743 kb on - strand at 523.750 kb on + strand at 523.814 kb on + strand, within PGA1_c05280 at 523.852 kb on + strand, within PGA1_c05280 at 523.887 kb on + strand, within PGA1_c05280 at 523.887 kb on + strand, within PGA1_c05280 at 523.895 kb on - strand, within PGA1_c05280 at 523.936 kb on - strand, within PGA1_c05280 at 523.957 kb on + strand, within PGA1_c05280 at 523.957 kb on + strand, within PGA1_c05280 at 523.974 kb on + strand, within PGA1_c05280 at 523.986 kb on - strand, within PGA1_c05280 at 524.113 kb on + strand, within PGA1_c05280 at 524.192 kb on + strand, within PGA1_c05280 at 524.192 kb on + strand, within PGA1_c05280 at 524.193 kb on + strand, within PGA1_c05280 at 524.200 kb on - strand, within PGA1_c05280 at 524.220 kb on - strand, within PGA1_c05280 at 524.235 kb on + strand, within PGA1_c05280 at 524.246 kb on - strand, within PGA1_c05280 at 524.288 kb on + strand, within PGA1_c05280 at 524.288 kb on + strand, within PGA1_c05280 at 524.309 kb on - strand, within PGA1_c05280 at 524.347 kb on + strand, within PGA1_c05280 at 524.355 kb on - strand, within PGA1_c05280 at 524.355 kb on - strand, within PGA1_c05280 at 524.400 kb on + strand, within PGA1_c05280 at 524.400 kb on + strand, within PGA1_c05280 at 524.410 kb on + strand, within PGA1_c05280 at 524.436 kb on - strand, within PGA1_c05280 at 524.463 kb on + strand, within PGA1_c05280 at 524.464 kb on + strand, within PGA1_c05280 at 524.571 kb on - strand, within PGA1_c05280 at 524.578 kb on + strand, within PGA1_c05280 at 524.578 kb on + strand, within PGA1_c05280 at 524.730 kb on - strand, within PGA1_c05280 at 524.762 kb on + strand, within PGA1_c05280 at 524.811 kb on + strand, within PGA1_c05280 at 524.819 kb on - strand, within PGA1_c05280 at 524.867 kb on + strand at 524.867 kb on + strand at 524.875 kb on - strand at 524.935 kb on + strand at 524.940 kb on + strand at 524.974 kb on + strand at 524.982 kb on - strand at 524.997 kb on - strand at 524.997 kb on - strand at 525.060 kb on - strand at 525.083 kb on - strand at 525.151 kb on - strand, within PGA1_c05290 at 525.151 kb on - strand, within PGA1_c05290 at 525.190 kb on - strand, within PGA1_c05290 at 525.221 kb on + strand, within PGA1_c05290 at 525.269 kb on + strand, within PGA1_c05290 at 525.269 kb on + strand, within PGA1_c05290 at 525.300 kb on - strand, within PGA1_c05290 at 525.307 kb on - strand, within PGA1_c05290 at 525.343 kb on + strand, within PGA1_c05290 at 525.346 kb on + strand, within PGA1_c05290 at 525.346 kb on + strand, within PGA1_c05290 at 525.356 kb on + strand, within PGA1_c05290 at 525.375 kb on + strand, within PGA1_c05290 at 525.383 kb on - strand, within PGA1_c05290 at 525.394 kb on + strand, within PGA1_c05290 at 525.408 kb on - strand, within PGA1_c05290 at 525.448 kb on + strand, within PGA1_c05290 at 525.471 kb on - strand, within PGA1_c05290 at 525.479 kb on + strand, within PGA1_c05290 at 525.479 kb on + strand, within PGA1_c05290 at 525.481 kb on + strand, within PGA1_c05290 at 525.487 kb on - strand, within PGA1_c05290 at 525.487 kb on - strand, within PGA1_c05290 at 525.487 kb on - strand, within PGA1_c05290 at 525.487 kb on - strand, within PGA1_c05290 at 525.487 kb on - strand, within PGA1_c05290 at 525.496 kb on + strand, within PGA1_c05290 at 525.501 kb on + strand, within PGA1_c05290 at 525.501 kb on + strand, within PGA1_c05290 at 525.501 kb on + strand, within PGA1_c05290 at 525.503 kb on - strand, within PGA1_c05290 at 525.509 kb on - strand, within PGA1_c05290 at 525.541 kb on + strand, within PGA1_c05290 at 525.548 kb on + strand, within PGA1_c05290 at 525.549 kb on - strand, within PGA1_c05290 at 525.556 kb on - strand, within PGA1_c05290 at 525.596 kb on + strand, within PGA1_c05290 at 525.613 kb on + strand, within PGA1_c05290 at 525.626 kb on - strand, within PGA1_c05290 at 525.628 kb on + strand, within PGA1_c05290 at 525.674 kb on - strand, within PGA1_c05290 at 525.712 kb on - strand, within PGA1_c05290 at 525.754 kb on + strand, within PGA1_c05290 at 525.762 kb on - strand, within PGA1_c05290 at 525.796 kb on - strand, within PGA1_c05290 at 525.798 kb on - strand, within PGA1_c05290 at 525.836 kb on + strand, within PGA1_c05290 at 525.844 kb on - strand, within PGA1_c05290 at 525.888 kb on - strand, within PGA1_c05290 at 525.924 kb on + strand, within PGA1_c05290 at 525.940 kb on + strand, within PGA1_c05290 at 525.943 kb on - strand, within PGA1_c05290 at 525.953 kb on - strand, within PGA1_c05290
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 522,859 + PGA1_c05270 0.31 +1.2 522,867 - PGA1_c05270 0.32 -2.1 522,907 + PGA1_c05270 0.35 -1.4 522,907 + PGA1_c05270 0.35 -0.7 522,954 - PGA1_c05270 0.40 -2.5 522,960 - PGA1_c05270 0.40 -1.4 522,961 + PGA1_c05270 0.40 +1.5 522,987 + PGA1_c05270 0.43 -2.0 522,987 + PGA1_c05270 0.43 +2.9 523,029 + PGA1_c05270 0.47 -1.2 523,029 + PGA1_c05270 0.47 -1.7 523,029 + PGA1_c05270 0.47 -0.9 523,037 + PGA1_c05270 0.47 +2.0 523,037 - PGA1_c05270 0.47 -1.0 523,037 - PGA1_c05270 0.47 -1.5 523,037 - PGA1_c05270 0.47 -1.0 523,148 + PGA1_c05270 0.58 +2.4 523,148 + PGA1_c05270 0.58 -2.0 523,148 + PGA1_c05270 0.58 +2.3 523,148 + PGA1_c05270 0.58 -1.8 523,156 - PGA1_c05270 0.59 +0.1 523,156 - PGA1_c05270 0.59 +0.5 523,251 - PGA1_c05270 0.67 +1.1 523,256 + PGA1_c05270 0.68 -3.2 523,264 - PGA1_c05270 0.69 -1.7 523,344 + PGA1_c05270 0.76 +1.3 523,363 - PGA1_c05270 0.78 +2.2 523,367 + PGA1_c05270 0.78 -0.9 523,370 - PGA1_c05270 0.78 +3.5 523,377 - PGA1_c05270 0.79 -1.1 523,458 + PGA1_c05270 0.87 +0.6 523,458 - PGA1_c05270 0.87 +2.1 523,460 + PGA1_c05270 0.87 -1.3 523,501 - -1.4 523,537 - -1.0 523,548 + +1.6 523,572 + +1.8 523,572 + +2.2 523,577 + +2.8 523,580 - +1.5 523,612 + -2.8 523,614 + +3.3 523,619 + +1.7 523,664 + -2.9 523,676 + -1.5 523,681 + +2.6 523,689 - +1.7 523,707 - -1.9 523,743 - +1.5 523,750 + -1.8 523,814 + PGA1_c05280 0.11 +1.5 523,852 + PGA1_c05280 0.14 +3.5 523,887 + PGA1_c05280 0.17 +0.0 523,887 + PGA1_c05280 0.17 -0.8 523,895 - PGA1_c05280 0.17 -2.3 523,936 - PGA1_c05280 0.20 -3.2 523,957 + PGA1_c05280 0.22 -1.0 523,957 + PGA1_c05280 0.22 -1.3 523,974 + PGA1_c05280 0.23 +2.5 523,986 - PGA1_c05280 0.24 -0.3 524,113 + PGA1_c05280 0.34 -1.8 524,192 + PGA1_c05280 0.40 -1.1 524,192 + PGA1_c05280 0.40 +1.0 524,193 + PGA1_c05280 0.40 +2.1 524,200 - PGA1_c05280 0.41 +2.0 524,220 - PGA1_c05280 0.43 -1.0 524,235 + PGA1_c05280 0.44 +1.6 524,246 - PGA1_c05280 0.45 -2.4 524,288 + PGA1_c05280 0.48 -2.1 524,288 + PGA1_c05280 0.48 +3.0 524,309 - PGA1_c05280 0.49 -1.3 524,347 + PGA1_c05280 0.52 -1.8 524,355 - PGA1_c05280 0.53 -1.0 524,355 - PGA1_c05280 0.53 -2.2 524,400 + PGA1_c05280 0.56 +0.7 524,400 + PGA1_c05280 0.56 -1.3 524,410 + PGA1_c05280 0.57 +4.4 524,436 - PGA1_c05280 0.59 +1.9 524,463 + PGA1_c05280 0.61 -3.6 524,464 + PGA1_c05280 0.61 +0.4 524,571 - PGA1_c05280 0.70 +1.9 524,578 + PGA1_c05280 0.70 +2.9 524,578 + PGA1_c05280 0.70 -1.4 524,730 - PGA1_c05280 0.82 +1.3 524,762 + PGA1_c05280 0.85 +2.1 524,811 + PGA1_c05280 0.88 -1.8 524,819 - PGA1_c05280 0.89 -0.9 524,867 + -1.2 524,867 + +1.8 524,875 - -1.0 524,935 + -2.1 524,940 + -0.1 524,974 + -0.0 524,982 - -0.1 524,997 - +0.5 524,997 - +3.0 525,060 - -1.8 525,083 - -1.5 525,151 - PGA1_c05290 0.12 -0.7 525,151 - PGA1_c05290 0.12 +1.7 525,190 - PGA1_c05290 0.14 -3.2 525,221 + PGA1_c05290 0.17 +0.1 525,269 + PGA1_c05290 0.20 +2.3 525,269 + PGA1_c05290 0.20 +0.2 525,300 - PGA1_c05290 0.22 +1.8 525,307 - PGA1_c05290 0.23 -0.3 525,343 + PGA1_c05290 0.26 -0.2 525,346 + PGA1_c05290 0.26 -0.8 525,346 + PGA1_c05290 0.26 -2.3 525,356 + PGA1_c05290 0.27 +3.7 525,375 + PGA1_c05290 0.28 -1.4 525,383 - PGA1_c05290 0.29 +2.4 525,394 + PGA1_c05290 0.29 +4.1 525,408 - PGA1_c05290 0.30 -1.7 525,448 + PGA1_c05290 0.33 +1.6 525,471 - PGA1_c05290 0.35 +0.5 525,479 + PGA1_c05290 0.36 +3.1 525,479 + PGA1_c05290 0.36 +0.9 525,481 + PGA1_c05290 0.36 +1.6 525,487 - PGA1_c05290 0.36 -0.7 525,487 - PGA1_c05290 0.36 -1.2 525,487 - PGA1_c05290 0.36 +2.7 525,487 - PGA1_c05290 0.36 +2.1 525,487 - PGA1_c05290 0.36 +3.6 525,496 + PGA1_c05290 0.37 -2.3 525,501 + PGA1_c05290 0.37 -1.9 525,501 + PGA1_c05290 0.37 +2.7 525,501 + PGA1_c05290 0.37 +4.6 525,503 - PGA1_c05290 0.37 -2.0 525,509 - PGA1_c05290 0.38 -1.6 525,541 + PGA1_c05290 0.40 -0.7 525,548 + PGA1_c05290 0.41 +1.3 525,549 - PGA1_c05290 0.41 -1.2 525,556 - PGA1_c05290 0.41 -1.5 525,596 + PGA1_c05290 0.44 -0.2 525,613 + PGA1_c05290 0.45 -2.0 525,626 - PGA1_c05290 0.46 +4.0 525,628 + PGA1_c05290 0.47 -1.5 525,674 - PGA1_c05290 0.50 -1.6 525,712 - PGA1_c05290 0.53 +1.8 525,754 + PGA1_c05290 0.56 +1.9 525,762 - PGA1_c05290 0.56 -1.1 525,796 - PGA1_c05290 0.59 +3.4 525,798 - PGA1_c05290 0.59 +5.5 525,836 + PGA1_c05290 0.62 -0.6 525,844 - PGA1_c05290 0.62 +1.1 525,888 - PGA1_c05290 0.66 -0.8 525,924 + PGA1_c05290 0.68 +0.5 525,940 + PGA1_c05290 0.69 +1.9 525,943 - PGA1_c05290 0.70 -1.4 525,953 - PGA1_c05290 0.70 +1.8
Or see this region's nucleotide sequence