Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05210 and PGA1_c05220 are separated by 7 nucleotides PGA1_c05220 and PGA1_c05230 are separated by 111 nucleotides
PGA1_c05210: PGA1_c05210 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 514,433 to 515,548
_c05210
PGA1_c05220: PGA1_c05220 - putative sn-glycerol-3-phosphate import ATP-binding protein UgpC, at 515,556 to 516,674
_c05220
PGA1_c05230: PGA1_c05230 - ABC transporter, extracellular solute-binding protein, at 516,786 to 518,519
_c05230
Position (kb) 515
516
517 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 514.562 kb on - strand, within PGA1_c05210 at 514.564 kb on + strand, within PGA1_c05210 at 514.584 kb on + strand, within PGA1_c05210 at 514.584 kb on + strand, within PGA1_c05210 at 514.592 kb on - strand, within PGA1_c05210 at 514.613 kb on + strand, within PGA1_c05210 at 514.621 kb on - strand, within PGA1_c05210 at 514.628 kb on - strand, within PGA1_c05210 at 514.656 kb on + strand, within PGA1_c05210 at 514.720 kb on - strand, within PGA1_c05210 at 514.720 kb on - strand, within PGA1_c05210 at 514.720 kb on - strand, within PGA1_c05210 at 514.758 kb on - strand, within PGA1_c05210 at 514.770 kb on + strand, within PGA1_c05210 at 514.770 kb on + strand, within PGA1_c05210 at 514.775 kb on + strand, within PGA1_c05210 at 514.778 kb on - strand, within PGA1_c05210 at 514.800 kb on - strand, within PGA1_c05210 at 514.850 kb on + strand, within PGA1_c05210 at 514.857 kb on + strand, within PGA1_c05210 at 514.891 kb on - strand, within PGA1_c05210 at 514.931 kb on + strand, within PGA1_c05210 at 514.962 kb on - strand, within PGA1_c05210 at 514.974 kb on + strand, within PGA1_c05210 at 515.029 kb on - strand, within PGA1_c05210 at 515.069 kb on + strand, within PGA1_c05210 at 515.195 kb on + strand, within PGA1_c05210 at 515.197 kb on + strand, within PGA1_c05210 at 515.203 kb on - strand, within PGA1_c05210 at 515.223 kb on + strand, within PGA1_c05210 at 515.226 kb on - strand, within PGA1_c05210 at 515.231 kb on - strand, within PGA1_c05210 at 515.277 kb on + strand, within PGA1_c05210 at 515.301 kb on + strand, within PGA1_c05210 at 515.301 kb on + strand, within PGA1_c05210 at 515.309 kb on - strand, within PGA1_c05210 at 515.309 kb on - strand, within PGA1_c05210 at 515.311 kb on + strand, within PGA1_c05210 at 515.398 kb on - strand, within PGA1_c05210 at 515.431 kb on + strand, within PGA1_c05210 at 515.445 kb on + strand at 515.446 kb on + strand at 515.499 kb on - strand at 515.506 kb on + strand at 515.506 kb on + strand at 515.506 kb on + strand at 515.506 kb on + strand at 515.506 kb on + strand at 515.506 kb on + strand at 515.506 kb on + strand at 515.506 kb on + strand at 515.514 kb on - strand at 515.514 kb on - strand at 515.514 kb on - strand at 515.516 kb on + strand at 515.533 kb on + strand at 515.554 kb on - strand at 515.614 kb on + strand at 515.633 kb on + strand at 515.642 kb on + strand at 515.719 kb on + strand, within PGA1_c05220 at 515.729 kb on + strand, within PGA1_c05220 at 515.729 kb on + strand, within PGA1_c05220 at 515.747 kb on + strand, within PGA1_c05220 at 515.750 kb on - strand, within PGA1_c05220 at 515.800 kb on + strand, within PGA1_c05220 at 515.862 kb on + strand, within PGA1_c05220 at 515.870 kb on - strand, within PGA1_c05220 at 515.882 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.887 kb on + strand, within PGA1_c05220 at 515.895 kb on - strand, within PGA1_c05220 at 515.895 kb on - strand, within PGA1_c05220 at 515.948 kb on + strand, within PGA1_c05220 at 515.953 kb on + strand, within PGA1_c05220 at 515.956 kb on - strand, within PGA1_c05220 at 516.004 kb on + strand, within PGA1_c05220 at 516.010 kb on + strand, within PGA1_c05220 at 516.018 kb on - strand, within PGA1_c05220 at 516.039 kb on - strand, within PGA1_c05220 at 516.077 kb on + strand, within PGA1_c05220 at 516.204 kb on - strand, within PGA1_c05220 at 516.209 kb on - strand, within PGA1_c05220 at 516.209 kb on - strand, within PGA1_c05220 at 516.219 kb on + strand, within PGA1_c05220 at 516.219 kb on + strand, within PGA1_c05220 at 516.257 kb on + strand, within PGA1_c05220 at 516.372 kb on - strand, within PGA1_c05220 at 516.431 kb on + strand, within PGA1_c05220 at 516.441 kb on - strand, within PGA1_c05220 at 516.587 kb on + strand at 516.592 kb on + strand at 516.711 kb on - strand at 516.751 kb on + strand at 516.768 kb on + strand at 516.783 kb on + strand at 516.783 kb on - strand at 516.791 kb on - strand at 516.815 kb on + strand at 516.829 kb on + strand at 516.837 kb on - strand at 516.945 kb on - strand at 516.958 kb on - strand at 516.962 kb on + strand, within PGA1_c05230 at 516.969 kb on + strand, within PGA1_c05230 at 516.970 kb on - strand, within PGA1_c05230 at 517.002 kb on + strand, within PGA1_c05230 at 517.002 kb on + strand, within PGA1_c05230 at 517.033 kb on + strand, within PGA1_c05230 at 517.041 kb on - strand, within PGA1_c05230 at 517.060 kb on - strand, within PGA1_c05230 at 517.070 kb on - strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.073 kb on + strand, within PGA1_c05230 at 517.091 kb on + strand, within PGA1_c05230 at 517.110 kb on - strand, within PGA1_c05230 at 517.173 kb on + strand, within PGA1_c05230 at 517.180 kb on - strand, within PGA1_c05230 at 517.198 kb on - strand, within PGA1_c05230 at 517.212 kb on + strand, within PGA1_c05230 at 517.212 kb on + strand, within PGA1_c05230 at 517.220 kb on - strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.246 kb on + strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.254 kb on - strand, within PGA1_c05230 at 517.256 kb on - strand, within PGA1_c05230 at 517.318 kb on + strand, within PGA1_c05230 at 517.365 kb on + strand, within PGA1_c05230 at 517.378 kb on - strand, within PGA1_c05230 at 517.503 kb on - strand, within PGA1_c05230 at 517.505 kb on + strand, within PGA1_c05230 at 517.505 kb on + strand, within PGA1_c05230 at 517.513 kb on - strand, within PGA1_c05230 at 517.590 kb on - strand, within PGA1_c05230
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 514,562 - PGA1_c05210 0.12 +3.9 514,564 + PGA1_c05210 0.12 -0.6 514,584 + PGA1_c05210 0.14 -0.7 514,584 + PGA1_c05210 0.14 +3.6 514,592 - PGA1_c05210 0.14 +0.2 514,613 + PGA1_c05210 0.16 -3.3 514,621 - PGA1_c05210 0.17 -1.9 514,628 - PGA1_c05210 0.17 -2.5 514,656 + PGA1_c05210 0.20 -1.8 514,720 - PGA1_c05210 0.26 +2.2 514,720 - PGA1_c05210 0.26 -1.2 514,720 - PGA1_c05210 0.26 -0.6 514,758 - PGA1_c05210 0.29 -2.1 514,770 + PGA1_c05210 0.30 -2.2 514,770 + PGA1_c05210 0.30 +2.5 514,775 + PGA1_c05210 0.31 +2.5 514,778 - PGA1_c05210 0.31 -1.1 514,800 - PGA1_c05210 0.33 -0.5 514,850 + PGA1_c05210 0.37 -0.6 514,857 + PGA1_c05210 0.38 +1.0 514,891 - PGA1_c05210 0.41 +1.7 514,931 + PGA1_c05210 0.45 +2.9 514,962 - PGA1_c05210 0.47 -2.5 514,974 + PGA1_c05210 0.48 +1.8 515,029 - PGA1_c05210 0.53 -1.1 515,069 + PGA1_c05210 0.57 -2.6 515,195 + PGA1_c05210 0.68 +1.4 515,197 + PGA1_c05210 0.68 +0.8 515,203 - PGA1_c05210 0.69 -2.2 515,223 + PGA1_c05210 0.71 +2.7 515,226 - PGA1_c05210 0.71 -3.3 515,231 - PGA1_c05210 0.72 +0.1 515,277 + PGA1_c05210 0.76 -1.6 515,301 + PGA1_c05210 0.78 +1.8 515,301 + PGA1_c05210 0.78 +1.0 515,309 - PGA1_c05210 0.78 -0.7 515,309 - PGA1_c05210 0.78 +0.1 515,311 + PGA1_c05210 0.79 -1.9 515,398 - PGA1_c05210 0.86 +1.3 515,431 + PGA1_c05210 0.89 -1.1 515,445 + -1.4 515,446 + +2.1 515,499 - -1.7 515,506 + -1.8 515,506 + -1.0 515,506 + -1.6 515,506 + -0.9 515,506 + -1.9 515,506 + +3.2 515,506 + +1.1 515,506 + +1.1 515,514 - +0.2 515,514 - +0.7 515,514 - +1.8 515,516 + +0.1 515,533 + -3.8 515,554 - -1.5 515,614 + -2.6 515,633 + +0.6 515,642 + -0.2 515,719 + PGA1_c05220 0.15 +2.3 515,729 + PGA1_c05220 0.15 +2.4 515,729 + PGA1_c05220 0.15 +1.8 515,747 + PGA1_c05220 0.17 +1.7 515,750 - PGA1_c05220 0.17 +3.0 515,800 + PGA1_c05220 0.22 -0.9 515,862 + PGA1_c05220 0.27 -1.1 515,870 - PGA1_c05220 0.28 -1.8 515,882 + PGA1_c05220 0.29 -1.0 515,887 + PGA1_c05220 0.30 -0.9 515,887 + PGA1_c05220 0.30 -1.1 515,887 + PGA1_c05220 0.30 +2.2 515,887 + PGA1_c05220 0.30 +2.3 515,887 + PGA1_c05220 0.30 -1.7 515,887 + PGA1_c05220 0.30 +1.6 515,895 - PGA1_c05220 0.30 +3.4 515,895 - PGA1_c05220 0.30 -0.5 515,948 + PGA1_c05220 0.35 +1.2 515,953 + PGA1_c05220 0.35 -2.9 515,956 - PGA1_c05220 0.36 +2.0 516,004 + PGA1_c05220 0.40 -2.3 516,010 + PGA1_c05220 0.41 -2.8 516,018 - PGA1_c05220 0.41 +1.5 516,039 - PGA1_c05220 0.43 -0.6 516,077 + PGA1_c05220 0.47 -1.9 516,204 - PGA1_c05220 0.58 +1.9 516,209 - PGA1_c05220 0.58 -1.8 516,209 - PGA1_c05220 0.58 -0.7 516,219 + PGA1_c05220 0.59 +1.4 516,219 + PGA1_c05220 0.59 -1.7 516,257 + PGA1_c05220 0.63 -1.8 516,372 - PGA1_c05220 0.73 +3.1 516,431 + PGA1_c05220 0.78 -0.4 516,441 - PGA1_c05220 0.79 +1.1 516,587 + +2.8 516,592 + -1.5 516,711 - -2.6 516,751 + +1.8 516,768 + -1.4 516,783 + -1.3 516,783 - -2.1 516,791 - -1.5 516,815 + +1.9 516,829 + +2.3 516,837 - -1.4 516,945 - -2.3 516,958 - -1.2 516,962 + PGA1_c05230 0.10 -1.9 516,969 + PGA1_c05230 0.11 +3.5 516,970 - PGA1_c05230 0.11 -1.5 517,002 + PGA1_c05230 0.12 +1.0 517,002 + PGA1_c05230 0.12 -0.6 517,033 + PGA1_c05230 0.14 +3.4 517,041 - PGA1_c05230 0.15 +2.2 517,060 - PGA1_c05230 0.16 +2.9 517,070 - PGA1_c05230 0.16 -2.3 517,073 + PGA1_c05230 0.17 +1.3 517,073 + PGA1_c05230 0.17 -1.7 517,073 + PGA1_c05230 0.17 +0.6 517,091 + PGA1_c05230 0.18 +0.0 517,110 - PGA1_c05230 0.19 -1.1 517,173 + PGA1_c05230 0.22 +2.4 517,180 - PGA1_c05230 0.23 -0.6 517,198 - PGA1_c05230 0.24 +2.0 517,212 + PGA1_c05230 0.25 +2.7 517,212 + PGA1_c05230 0.25 -1.6 517,220 - PGA1_c05230 0.25 +2.8 517,246 + PGA1_c05230 0.27 -1.0 517,246 + PGA1_c05230 0.27 -2.8 517,246 + PGA1_c05230 0.27 -1.0 517,246 + PGA1_c05230 0.27 -1.8 517,254 - PGA1_c05230 0.27 -2.9 517,254 - PGA1_c05230 0.27 +2.1 517,254 - PGA1_c05230 0.27 +1.7 517,254 - PGA1_c05230 0.27 +2.3 517,254 - PGA1_c05230 0.27 +0.5 517,256 - PGA1_c05230 0.27 -0.1 517,318 + PGA1_c05230 0.31 +2.6 517,365 + PGA1_c05230 0.33 +1.7 517,378 - PGA1_c05230 0.34 +1.2 517,503 - PGA1_c05230 0.41 +3.3 517,505 + PGA1_c05230 0.41 +1.2 517,505 + PGA1_c05230 0.41 -2.9 517,513 - PGA1_c05230 0.42 +2.1 517,590 - PGA1_c05230 0.46 +1.5
Or see this region's nucleotide sequence