Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05180

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c05160 and PGA1_c05170 overlap by 11 nucleotidesPGA1_c05170 and PGA1_c05180 are separated by 156 nucleotidesPGA1_c05180 and PGA1_c05190 overlap by 1 nucleotidesPGA1_c05190 and PGA1_c05200 are separated by 14 nucleotides PGA1_c05160: PGA1_c05160 - peptidase M56-like protein, at 510,787 to 511,938 _c05160 PGA1_c05170: PGA1_c05170 - penicillinase repressor blaI/mecI-like protein, at 511,928 to 512,323 _c05170 PGA1_c05180: PGA1_c05180 - Predicted small integral membrane protein, at 512,480 to 512,758 _c05180 PGA1_c05190: PGA1_c05190 - ABC transporter, inner membrane component, at 512,758 to 513,555 _c05190 PGA1_c05200: PGA1_c05200 - putative ABC transporter, inner membrane component, at 513,570 to 514,433 _c05200 Position (kb) 512 513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 511.510 kb on - strand, within PGA1_c05160at 511.567 kb on - strand, within PGA1_c05160at 511.603 kb on - strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.638 kb on + strand, within PGA1_c05160at 511.646 kb on - strand, within PGA1_c05160at 511.646 kb on - strand, within PGA1_c05160at 511.664 kb on + strand, within PGA1_c05160at 511.725 kb on - strand, within PGA1_c05160at 511.725 kb on - strand, within PGA1_c05160at 511.772 kb on - strand, within PGA1_c05160at 511.822 kb on - strand, within PGA1_c05160at 511.897 kb on + strandat 511.913 kb on - strandat 512.040 kb on + strand, within PGA1_c05170at 512.040 kb on + strand, within PGA1_c05170at 512.042 kb on + strand, within PGA1_c05170at 512.071 kb on - strand, within PGA1_c05170at 512.099 kb on - strand, within PGA1_c05170at 512.104 kb on - strand, within PGA1_c05170at 512.104 kb on - strand, within PGA1_c05170at 512.280 kb on + strand, within PGA1_c05170at 512.292 kb on + strandat 512.306 kb on + strandat 512.332 kb on + strandat 512.340 kb on - strandat 512.354 kb on - strandat 512.354 kb on - strandat 512.355 kb on - strandat 512.355 kb on - strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.357 kb on + strandat 512.365 kb on - strandat 512.365 kb on - strandat 512.365 kb on - strandat 512.367 kb on - strandat 512.400 kb on + strandat 512.400 kb on + strandat 512.408 kb on - strandat 512.420 kb on + strandat 512.430 kb on + strandat 512.430 kb on + strandat 512.443 kb on - strandat 512.457 kb on - strandat 512.467 kb on + strandat 512.554 kb on + strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.562 kb on - strand, within PGA1_c05180at 512.591 kb on - strand, within PGA1_c05180at 512.648 kb on - strand, within PGA1_c05180at 512.725 kb on - strand, within PGA1_c05180at 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.735 kb on + strandat 512.736 kb on + strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.743 kb on - strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.755 kb on + strandat 512.865 kb on + strand, within PGA1_c05190at 512.873 kb on - strand, within PGA1_c05190at 512.901 kb on - strand, within PGA1_c05190at 512.936 kb on + strand, within PGA1_c05190at 512.944 kb on - strand, within PGA1_c05190at 512.944 kb on - strand, within PGA1_c05190at 512.963 kb on - strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 512.997 kb on + strand, within PGA1_c05190at 513.002 kb on + strand, within PGA1_c05190at 513.002 kb on + strand, within PGA1_c05190at 513.010 kb on - strand, within PGA1_c05190at 513.046 kb on + strand, within PGA1_c05190at 513.054 kb on - strand, within PGA1_c05190at 513.054 kb on - strand, within PGA1_c05190at 513.068 kb on + strand, within PGA1_c05190at 513.121 kb on - strand, within PGA1_c05190at 513.166 kb on - strand, within PGA1_c05190at 513.170 kb on + strand, within PGA1_c05190at 513.172 kb on + strand, within PGA1_c05190at 513.178 kb on - strand, within PGA1_c05190at 513.239 kb on + strand, within PGA1_c05190at 513.249 kb on + strand, within PGA1_c05190at 513.291 kb on - strand, within PGA1_c05190at 513.315 kb on + strand, within PGA1_c05190at 513.315 kb on + strand, within PGA1_c05190at 513.402 kb on - strand, within PGA1_c05190at 513.420 kb on + strand, within PGA1_c05190at 513.428 kb on - strand, within PGA1_c05190at 513.428 kb on - strand, within PGA1_c05190at 513.527 kb on - strandat 513.565 kb on - strandat 513.575 kb on - strandat 513.598 kb on + strandat 513.598 kb on + strandat 513.598 kb on + strandat 513.606 kb on + strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.606 kb on - strandat 513.646 kb on - strandat 513.685 kb on - strand, within PGA1_c05200at 513.721 kb on - strand, within PGA1_c05200at 513.746 kb on + strand, within PGA1_c05200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
remove
511,510 - PGA1_c05160 0.63 +3.8
511,567 - PGA1_c05160 0.68 -3.2
511,603 - PGA1_c05160 0.71 +0.6
511,638 + PGA1_c05160 0.74 +1.5
511,638 + PGA1_c05160 0.74 -1.4
511,638 + PGA1_c05160 0.74 -1.2
511,646 - PGA1_c05160 0.75 -2.0
511,646 - PGA1_c05160 0.75 -1.4
511,664 + PGA1_c05160 0.76 +2.3
511,725 - PGA1_c05160 0.81 -0.3
511,725 - PGA1_c05160 0.81 +2.1
511,772 - PGA1_c05160 0.86 +2.0
511,822 - PGA1_c05160 0.90 +2.2
511,897 + -0.6
511,913 - +2.4
512,040 + PGA1_c05170 0.28 +1.1
512,040 + PGA1_c05170 0.28 +2.1
512,042 + PGA1_c05170 0.29 -2.2
512,071 - PGA1_c05170 0.36 -2.6
512,099 - PGA1_c05170 0.43 -2.5
512,104 - PGA1_c05170 0.44 -3.3
512,104 - PGA1_c05170 0.44 -2.3
512,280 + PGA1_c05170 0.89 -0.0
512,292 + -1.1
512,306 + -0.0
512,332 + +1.7
512,340 - -1.4
512,354 - -1.6
512,354 - -2.0
512,355 - -0.0
512,355 - -2.2
512,357 + -2.2
512,357 + -0.5
512,357 + +2.6
512,357 + +2.2
512,357 + -3.2
512,357 + +2.2
512,357 + -0.8
512,357 + -0.8
512,365 - -1.0
512,365 - -1.2
512,365 - -2.8
512,367 - +2.9
512,400 + -1.1
512,400 + -2.5
512,408 - -1.9
512,420 + -1.9
512,430 + -1.9
512,430 + -1.5
512,443 - -0.4
512,457 - +0.6
512,467 + -1.4
512,554 + PGA1_c05180 0.27 -3.0
512,562 - PGA1_c05180 0.29 -0.8
512,562 - PGA1_c05180 0.29 -2.5
512,562 - PGA1_c05180 0.29 +1.6
512,591 - PGA1_c05180 0.40 -0.7
512,648 - PGA1_c05180 0.60 -1.6
512,725 - PGA1_c05180 0.88 -1.4
512,735 + +1.3
512,735 + +1.8
512,735 + +1.7
512,735 + -2.2
512,735 + -0.7
512,735 + -1.2
512,735 + +1.7
512,735 + -0.9
512,735 + +2.2
512,735 + +2.6
512,736 + +1.8
512,743 - -3.1
512,743 - -0.2
512,743 - +1.0
512,743 - -1.1
512,743 - -1.3
512,743 - -1.4
512,743 - -0.8
512,755 + -1.3
512,755 + +0.1
512,755 + -1.7
512,755 + -1.8
512,755 + +2.3
512,865 + PGA1_c05190 0.13 +4.1
512,873 - PGA1_c05190 0.14 -1.8
512,901 - PGA1_c05190 0.18 -2.1
512,936 + PGA1_c05190 0.22 +0.1
512,944 - PGA1_c05190 0.23 +0.1
512,944 - PGA1_c05190 0.23 +0.6
512,963 - PGA1_c05190 0.26 +1.7
512,997 + PGA1_c05190 0.30 -1.8
512,997 + PGA1_c05190 0.30 +0.2
512,997 + PGA1_c05190 0.30 +1.5
513,002 + PGA1_c05190 0.31 +0.7
513,002 + PGA1_c05190 0.31 -1.5
513,010 - PGA1_c05190 0.32 +2.8
513,046 + PGA1_c05190 0.36 -2.5
513,054 - PGA1_c05190 0.37 -1.9
513,054 - PGA1_c05190 0.37 -0.8
513,068 + PGA1_c05190 0.39 +1.9
513,121 - PGA1_c05190 0.45 -3.1
513,166 - PGA1_c05190 0.51 +2.8
513,170 + PGA1_c05190 0.52 -1.8
513,172 + PGA1_c05190 0.52 -2.0
513,178 - PGA1_c05190 0.53 -1.8
513,239 + PGA1_c05190 0.60 -3.8
513,249 + PGA1_c05190 0.62 -1.1
513,291 - PGA1_c05190 0.67 -0.6
513,315 + PGA1_c05190 0.70 -2.6
513,315 + PGA1_c05190 0.70 -0.1
513,402 - PGA1_c05190 0.81 -2.0
513,420 + PGA1_c05190 0.83 +0.6
513,428 - PGA1_c05190 0.84 +1.4
513,428 - PGA1_c05190 0.84 -1.4
513,527 - +1.2
513,565 - +2.0
513,575 - -2.4
513,598 + -1.7
513,598 + -0.5
513,598 + +1.9
513,606 + -2.3
513,606 - +3.0
513,606 - +1.8
513,606 - -2.0
513,606 - -0.3
513,606 - -2.2
513,606 - +1.8
513,646 - -0.8
513,685 - PGA1_c05200 0.13 -1.7
513,721 - PGA1_c05200 0.17 +2.2
513,746 + PGA1_c05200 0.20 +1.9

Or see this region's nucleotide sequence