Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00490 and PGA1_c00500 are separated by 219 nucleotides PGA1_c00500 and PGA1_c00510 are separated by 11 nucleotides PGA1_c00510 and PGA1_c00520 are separated by 302 nucleotides
PGA1_c00490: PGA1_c00490 - ATPases involved in chromosome partitioning, at 54,158 to 54,967
_c00490
PGA1_c00500: PGA1_c00500 - 50S ribosomal protein L31, at 55,187 to 55,408
_c00500
PGA1_c00510: PGA1_c00510 - 50S ribosomal protein L19, at 55,420 to 55,791
_c00510
PGA1_c00520: PGA1_c00520 - tRNA (guanine-N(1)-)-methyltransferase TrmD, at 56,094 to 56,894
_c00520
Position (kb) 55
56 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 54.211 kb on + strand at 54.211 kb on + strand at 54.220 kb on - strand at 54.237 kb on + strand at 54.285 kb on - strand, within PGA1_c00490 at 54.296 kb on - strand, within PGA1_c00490 at 54.361 kb on + strand, within PGA1_c00490 at 54.480 kb on + strand, within PGA1_c00490 at 54.652 kb on - strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.724 kb on + strand, within PGA1_c00490 at 54.732 kb on - strand, within PGA1_c00490 at 54.776 kb on - strand, within PGA1_c00490 at 54.779 kb on + strand, within PGA1_c00490 at 54.855 kb on - strand, within PGA1_c00490 at 54.913 kb on + strand at 54.984 kb on - strand at 54.986 kb on - strand at 54.986 kb on - strand at 54.995 kb on + strand at 55.077 kb on - strand at 55.087 kb on - strand at 56.042 kb on + strand at 56.047 kb on + strand at 56.067 kb on - strand at 56.120 kb on - strand at 56.120 kb on - strand at 56.123 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 54,211 + -0.8 54,211 + -1.1 54,220 - -1.4 54,237 + -0.8 54,285 - PGA1_c00490 0.16 -1.6 54,296 - PGA1_c00490 0.17 -1.2 54,361 + PGA1_c00490 0.25 -0.0 54,480 + PGA1_c00490 0.40 -0.3 54,652 - PGA1_c00490 0.61 -0.8 54,724 + PGA1_c00490 0.70 +1.2 54,724 + PGA1_c00490 0.70 -1.0 54,732 - PGA1_c00490 0.71 -0.3 54,776 - PGA1_c00490 0.76 +1.3 54,779 + PGA1_c00490 0.77 -0.4 54,855 - PGA1_c00490 0.86 -0.6 54,913 + +0.2 54,984 - -1.2 54,986 - -2.4 54,986 - -1.4 54,995 + +2.0 55,077 - -2.1 55,087 - -0.7 56,042 + +1.2 56,047 + -2.0 56,067 - -1.6 56,120 - +2.4 56,120 - +3.0 56,123 - -2.3
Or see this region's nucleotide sequence