Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04900 and PGA1_c04910 are separated by 197 nucleotides PGA1_c04910 and PGA1_c04920 are separated by 124 nucleotides
PGA1_c04900: PGA1_c04900 - peptidyl-tRNA hydrolase Pth, at 481,557 to 482,315
_c04900
PGA1_c04910: PGA1_c04910 - 50S ribosomal protein L25, at 482,513 to 483,142
_c04910
PGA1_c04920: PGA1_c04920 - l-lactate dehydrogenase IldD, at 483,267 to 484,433
_c04920
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.514 kb on + strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.522 kb on - strand at 481.588 kb on - strand at 481.611 kb on + strand at 481.614 kb on + strand at 481.614 kb on + strand at 481.619 kb on - strand at 481.619 kb on - strand at 481.622 kb on - strand at 481.629 kb on - strand at 481.629 kb on - strand at 481.666 kb on - strand, within PGA1_c04900 at 481.711 kb on - strand, within PGA1_c04900 at 481.750 kb on + strand, within PGA1_c04900 at 481.763 kb on + strand, within PGA1_c04900 at 482.327 kb on - strand at 482.327 kb on - strand at 482.327 kb on - strand at 482.329 kb on - strand at 482.341 kb on - strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.350 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on + strand at 482.358 kb on - strand at 482.358 kb on - strand at 482.366 kb on - strand at 482.366 kb on - strand at 482.399 kb on + strand at 482.419 kb on - strand at 482.421 kb on + strand at 482.435 kb on + strand at 482.435 kb on + strand at 482.443 kb on - strand at 483.252 kb on - strand at 483.326 kb on - strand at 483.357 kb on + strand at 483.403 kb on - strand, within PGA1_c04920 at 483.418 kb on - strand, within PGA1_c04920 at 483.513 kb on + strand, within PGA1_c04920 at 483.521 kb on - strand, within PGA1_c04920 at 483.521 kb on - strand, within PGA1_c04920 at 483.523 kb on + strand, within PGA1_c04920 at 483.577 kb on - strand, within PGA1_c04920 at 483.584 kb on - strand, within PGA1_c04920 at 483.617 kb on + strand, within PGA1_c04920 at 483.631 kb on + strand, within PGA1_c04920 at 483.682 kb on + strand, within PGA1_c04920 at 483.742 kb on + strand, within PGA1_c04920 at 483.743 kb on + strand, within PGA1_c04920 at 483.751 kb on - strand, within PGA1_c04920 at 483.784 kb on + strand, within PGA1_c04920 at 483.851 kb on + strand, within PGA1_c04920 at 483.885 kb on + strand, within PGA1_c04920 at 483.893 kb on - strand, within PGA1_c04920 at 483.924 kb on + strand, within PGA1_c04920 at 483.924 kb on + strand, within PGA1_c04920 at 483.952 kb on - strand, within PGA1_c04920 at 484.003 kb on + strand, within PGA1_c04920 at 484.007 kb on + strand, within PGA1_c04920 at 484.050 kb on - strand, within PGA1_c04920 at 484.128 kb on - strand, within PGA1_c04920 at 484.138 kb on - strand, within PGA1_c04920
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 481,514 + -2.4 481,514 + -1.1 481,514 + -2.3 481,514 + -0.7 481,514 + +0.6 481,514 + -2.1 481,522 - +1.8 481,522 - +1.5 481,522 - +2.9 481,522 - -1.6 481,522 - +1.5 481,522 - -1.5 481,522 - -1.8 481,522 - +1.7 481,588 - -1.4 481,611 + -1.4 481,614 + -1.5 481,614 + +2.9 481,619 - +1.0 481,619 - -1.9 481,622 - +1.1 481,629 - -0.4 481,629 - -1.0 481,666 - PGA1_c04900 0.14 -1.8 481,711 - PGA1_c04900 0.20 -1.4 481,750 + PGA1_c04900 0.25 -1.7 481,763 + PGA1_c04900 0.27 +2.3 482,327 - -1.8 482,327 - +2.3 482,327 - +1.0 482,329 - +3.1 482,341 - -1.8 482,350 + +1.1 482,350 + +4.6 482,350 + +2.2 482,350 + +2.6 482,358 + -1.5 482,358 + -0.2 482,358 + -2.2 482,358 - +2.2 482,358 - -0.8 482,366 - +2.1 482,366 - +2.9 482,399 + +0.3 482,419 - +4.3 482,421 + -0.2 482,435 + -2.3 482,435 + +2.6 482,443 - +1.8 483,252 - +1.6 483,326 - -1.0 483,357 + +1.9 483,403 - PGA1_c04920 0.12 -1.2 483,418 - PGA1_c04920 0.13 +2.9 483,513 + PGA1_c04920 0.21 -1.9 483,521 - PGA1_c04920 0.22 +1.4 483,521 - PGA1_c04920 0.22 +3.2 483,523 + PGA1_c04920 0.22 +0.8 483,577 - PGA1_c04920 0.27 +3.0 483,584 - PGA1_c04920 0.27 +0.8 483,617 + PGA1_c04920 0.30 +2.6 483,631 + PGA1_c04920 0.31 -2.2 483,682 + PGA1_c04920 0.36 +2.3 483,742 + PGA1_c04920 0.41 +3.4 483,743 + PGA1_c04920 0.41 +2.4 483,751 - PGA1_c04920 0.41 -1.6 483,784 + PGA1_c04920 0.44 +2.5 483,851 + PGA1_c04920 0.50 +2.6 483,885 + PGA1_c04920 0.53 -0.4 483,893 - PGA1_c04920 0.54 +2.8 483,924 + PGA1_c04920 0.56 +2.5 483,924 + PGA1_c04920 0.56 +2.7 483,952 - PGA1_c04920 0.59 +2.3 484,003 + PGA1_c04920 0.63 +1.9 484,007 + PGA1_c04920 0.63 +5.0 484,050 - PGA1_c04920 0.67 +4.1 484,128 - PGA1_c04920 0.74 +2.1 484,138 - PGA1_c04920 0.75 -1.1
Or see this region's nucleotide sequence