Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04190 and PGA1_c04200 are separated by 159 nucleotides PGA1_c04200 and PGA1_c04210 overlap by 4 nucleotides
PGA1_c04190: PGA1_c04190 - phosphate uptake ABC transporter periplasmic solute-binding protein PhoD, at 406,582 to 407,490
_c04190
PGA1_c04200: PGA1_c04200 - phosphate uptake ABC transporter permease protein PhoE, at 407,650 to 408,519
_c04200
PGA1_c04210: PGA1_c04210 - phosphate uptake ABC transporter permease protein PhoT, at 408,516 to 409,886
_c04210
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 406.701 kb on - strand, within PGA1_c04190 at 406.721 kb on - strand, within PGA1_c04190 at 406.761 kb on - strand, within PGA1_c04190 at 406.788 kb on - strand, within PGA1_c04190 at 406.788 kb on - strand, within PGA1_c04190 at 406.796 kb on + strand, within PGA1_c04190 at 406.833 kb on + strand, within PGA1_c04190 at 406.882 kb on + strand, within PGA1_c04190 at 406.895 kb on - strand, within PGA1_c04190 at 406.924 kb on + strand, within PGA1_c04190 at 406.924 kb on + strand, within PGA1_c04190 at 406.926 kb on - strand, within PGA1_c04190 at 406.953 kb on - strand, within PGA1_c04190 at 406.986 kb on + strand, within PGA1_c04190 at 406.986 kb on + strand, within PGA1_c04190 at 406.989 kb on - strand, within PGA1_c04190 at 407.071 kb on + strand, within PGA1_c04190 at 407.122 kb on + strand, within PGA1_c04190 at 407.125 kb on - strand, within PGA1_c04190 at 407.132 kb on + strand, within PGA1_c04190 at 407.242 kb on + strand, within PGA1_c04190 at 407.245 kb on - strand, within PGA1_c04190 at 407.263 kb on - strand, within PGA1_c04190 at 407.280 kb on + strand, within PGA1_c04190 at 407.280 kb on + strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.288 kb on - strand, within PGA1_c04190 at 407.300 kb on + strand, within PGA1_c04190 at 407.300 kb on + strand, within PGA1_c04190 at 407.308 kb on - strand, within PGA1_c04190 at 407.311 kb on - strand, within PGA1_c04190 at 407.315 kb on + strand, within PGA1_c04190 at 407.318 kb on - strand, within PGA1_c04190 at 407.401 kb on - strand at 407.415 kb on + strand at 407.415 kb on + strand at 407.415 kb on + strand at 407.422 kb on - strand at 407.423 kb on - strand at 407.423 kb on - strand at 407.447 kb on + strand at 407.447 kb on + strand at 407.447 kb on + strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.455 kb on - strand at 407.499 kb on - strand at 407.512 kb on - strand at 407.517 kb on + strand at 407.520 kb on + strand at 407.528 kb on - strand at 407.537 kb on + strand at 407.569 kb on - strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.571 kb on + strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.579 kb on - strand at 407.582 kb on - strand at 407.665 kb on + strand at 407.737 kb on - strand, within PGA1_c04200 at 407.806 kb on + strand, within PGA1_c04200 at 407.859 kb on + strand, within PGA1_c04200 at 407.885 kb on - strand, within PGA1_c04200 at 407.902 kb on + strand, within PGA1_c04200 at 407.902 kb on + strand, within PGA1_c04200 at 407.907 kb on + strand, within PGA1_c04200 at 407.980 kb on + strand, within PGA1_c04200 at 407.980 kb on + strand, within PGA1_c04200 at 408.012 kb on - strand, within PGA1_c04200 at 408.124 kb on - strand, within PGA1_c04200 at 408.165 kb on + strand, within PGA1_c04200 at 408.225 kb on - strand, within PGA1_c04200 at 408.255 kb on + strand, within PGA1_c04200 at 408.256 kb on + strand, within PGA1_c04200 at 408.280 kb on + strand, within PGA1_c04200 at 408.304 kb on + strand, within PGA1_c04200 at 408.379 kb on - strand, within PGA1_c04200 at 408.395 kb on + strand, within PGA1_c04200 at 408.486 kb on - strand at 408.539 kb on + strand at 408.541 kb on + strand at 408.541 kb on + strand at 408.549 kb on - strand at 408.549 kb on - strand at 408.549 kb on - strand at 408.549 kb on - strand at 408.549 kb on - strand at 408.549 kb on - strand at 408.611 kb on - strand at 408.793 kb on - strand, within PGA1_c04210 at 408.897 kb on + strand, within PGA1_c04210 at 408.945 kb on + strand, within PGA1_c04210 at 409.062 kb on + strand, within PGA1_c04210 at 409.127 kb on - strand, within PGA1_c04210 at 409.127 kb on - strand, within PGA1_c04210 at 409.132 kb on - strand, within PGA1_c04210 at 409.137 kb on - strand, within PGA1_c04210 at 409.153 kb on - strand, within PGA1_c04210 at 409.215 kb on + strand, within PGA1_c04210 at 409.228 kb on - strand, within PGA1_c04210 at 409.231 kb on + strand, within PGA1_c04210 at 409.244 kb on - strand, within PGA1_c04210 at 409.296 kb on + strand, within PGA1_c04210 at 409.316 kb on + strand, within PGA1_c04210 at 409.354 kb on + strand, within PGA1_c04210 at 409.377 kb on - strand, within PGA1_c04210 at 409.396 kb on - strand, within PGA1_c04210 at 409.417 kb on - strand, within PGA1_c04210 at 409.417 kb on - strand, within PGA1_c04210 at 409.417 kb on - strand, within PGA1_c04210 at 409.422 kb on - strand, within PGA1_c04210 at 409.441 kb on + strand, within PGA1_c04210 at 409.494 kb on - strand, within PGA1_c04210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 406,701 - PGA1_c04190 0.13 +0.8 406,721 - PGA1_c04190 0.15 -1.5 406,761 - PGA1_c04190 0.20 +0.1 406,788 - PGA1_c04190 0.23 +3.2 406,788 - PGA1_c04190 0.23 +2.1 406,796 + PGA1_c04190 0.24 -1.5 406,833 + PGA1_c04190 0.28 +1.6 406,882 + PGA1_c04190 0.33 -0.9 406,895 - PGA1_c04190 0.34 +3.7 406,924 + PGA1_c04190 0.38 +1.9 406,924 + PGA1_c04190 0.38 -1.4 406,926 - PGA1_c04190 0.38 -1.7 406,953 - PGA1_c04190 0.41 -1.9 406,986 + PGA1_c04190 0.44 +2.3 406,986 + PGA1_c04190 0.44 -2.0 406,989 - PGA1_c04190 0.45 +1.4 407,071 + PGA1_c04190 0.54 +1.8 407,122 + PGA1_c04190 0.59 +1.1 407,125 - PGA1_c04190 0.60 -0.0 407,132 + PGA1_c04190 0.61 -1.5 407,242 + PGA1_c04190 0.73 +1.0 407,245 - PGA1_c04190 0.73 -0.8 407,263 - PGA1_c04190 0.75 +2.4 407,280 + PGA1_c04190 0.77 -1.6 407,280 + PGA1_c04190 0.77 +1.8 407,288 - PGA1_c04190 0.78 -2.4 407,288 - PGA1_c04190 0.78 -0.8 407,288 - PGA1_c04190 0.78 -2.3 407,300 + PGA1_c04190 0.79 -2.1 407,300 + PGA1_c04190 0.79 +1.2 407,308 - PGA1_c04190 0.80 +0.1 407,311 - PGA1_c04190 0.80 +0.2 407,315 + PGA1_c04190 0.81 -0.7 407,318 - PGA1_c04190 0.81 +0.5 407,401 - -1.3 407,415 + +1.6 407,415 + -1.7 407,415 + -1.6 407,422 - -2.3 407,423 - +2.7 407,423 - +1.5 407,447 + -1.4 407,447 + +0.8 407,447 + -1.6 407,455 - -1.6 407,455 - +0.5 407,455 - +0.1 407,455 - +1.9 407,455 - +4.0 407,455 - +0.8 407,499 - -1.1 407,512 - +0.4 407,517 + -1.0 407,520 + -2.1 407,528 - -2.2 407,537 + -1.4 407,569 - +2.1 407,571 + -1.2 407,571 + -1.5 407,571 + +0.7 407,571 + -1.2 407,571 + -1.7 407,571 + -2.8 407,571 + +3.0 407,579 - +1.3 407,579 - +3.9 407,579 - +1.7 407,579 - -1.8 407,579 - -2.8 407,579 - +4.1 407,579 - -1.1 407,579 - -0.7 407,579 - -0.4 407,579 - -0.0 407,582 - +2.1 407,665 + -2.1 407,737 - PGA1_c04200 0.10 -1.4 407,806 + PGA1_c04200 0.18 -0.4 407,859 + PGA1_c04200 0.24 -1.6 407,885 - PGA1_c04200 0.27 -1.5 407,902 + PGA1_c04200 0.29 -1.2 407,902 + PGA1_c04200 0.29 +1.5 407,907 + PGA1_c04200 0.30 -1.4 407,980 + PGA1_c04200 0.38 -2.5 407,980 + PGA1_c04200 0.38 +0.5 408,012 - PGA1_c04200 0.42 -2.3 408,124 - PGA1_c04200 0.54 +2.3 408,165 + PGA1_c04200 0.59 -2.5 408,225 - PGA1_c04200 0.66 +0.2 408,255 + PGA1_c04200 0.70 -1.2 408,256 + PGA1_c04200 0.70 +0.4 408,280 + PGA1_c04200 0.72 +0.2 408,304 + PGA1_c04200 0.75 -1.4 408,379 - PGA1_c04200 0.84 +0.1 408,395 + PGA1_c04200 0.86 +3.4 408,486 - +3.9 408,539 + -0.6 408,541 + -1.7 408,541 + -1.2 408,549 - +0.9 408,549 - -0.3 408,549 - -1.1 408,549 - -3.2 408,549 - +2.1 408,549 - +0.7 408,611 - -2.5 408,793 - PGA1_c04210 0.20 -2.5 408,897 + PGA1_c04210 0.28 -1.5 408,945 + PGA1_c04210 0.31 -2.8 409,062 + PGA1_c04210 0.40 -0.6 409,127 - PGA1_c04210 0.45 +3.1 409,127 - PGA1_c04210 0.45 +2.9 409,132 - PGA1_c04210 0.45 +1.6 409,137 - PGA1_c04210 0.45 -0.1 409,153 - PGA1_c04210 0.46 -2.7 409,215 + PGA1_c04210 0.51 +0.4 409,228 - PGA1_c04210 0.52 +3.1 409,231 + PGA1_c04210 0.52 +2.8 409,244 - PGA1_c04210 0.53 -0.1 409,296 + PGA1_c04210 0.57 +1.4 409,316 + PGA1_c04210 0.58 -0.6 409,354 + PGA1_c04210 0.61 -1.0 409,377 - PGA1_c04210 0.63 +2.0 409,396 - PGA1_c04210 0.64 +1.4 409,417 - PGA1_c04210 0.66 +1.8 409,417 - PGA1_c04210 0.66 +1.5 409,417 - PGA1_c04210 0.66 -0.8 409,422 - PGA1_c04210 0.66 +0.5 409,441 + PGA1_c04210 0.67 -3.0 409,494 - PGA1_c04210 0.71 +2.2
Or see this region's nucleotide sequence