Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c00400

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c00380 and PGA1_c00390 are separated by 51 nucleotidesPGA1_c00390 and PGA1_c00400 overlap by 4 nucleotidesPGA1_c00400 and PGA1_c00410 overlap by 4 nucleotides PGA1_c00380: PGA1_c00380 - putative maleylacetoacetate isomerase, at 43,276 to 43,962 _c00380 PGA1_c00390: PGA1_c00390 - glyoxalase-like protein, at 44,014 to 44,556 _c00390 PGA1_c00400: PGA1_c00400 - Protein of unknown function (DUF2783)., at 44,553 to 44,783 _c00400 PGA1_c00410: PGA1_c00410 - 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase MhpA, at 44,780 to 46,486 _c00410 Position (kb) 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 43.585 kb on - strand, within PGA1_c00380at 43.585 kb on - strand, within PGA1_c00380at 43.585 kb on - strand, within PGA1_c00380at 43.600 kb on - strand, within PGA1_c00380at 43.658 kb on + strand, within PGA1_c00380at 43.666 kb on - strand, within PGA1_c00380at 43.695 kb on + strand, within PGA1_c00380at 43.695 kb on + strand, within PGA1_c00380at 43.695 kb on + strand, within PGA1_c00380at 43.695 kb on + strand, within PGA1_c00380at 43.697 kb on + strand, within PGA1_c00380at 43.734 kb on + strand, within PGA1_c00380at 43.744 kb on + strand, within PGA1_c00380at 43.752 kb on - strand, within PGA1_c00380at 43.754 kb on + strand, within PGA1_c00380at 43.770 kb on + strand, within PGA1_c00380at 43.786 kb on + strand, within PGA1_c00380at 43.803 kb on + strand, within PGA1_c00380at 43.804 kb on + strand, within PGA1_c00380at 43.804 kb on + strand, within PGA1_c00380at 43.804 kb on + strand, within PGA1_c00380at 43.827 kb on + strand, within PGA1_c00380at 43.835 kb on - strand, within PGA1_c00380at 43.837 kb on + strand, within PGA1_c00380at 43.840 kb on - strand, within PGA1_c00380at 43.842 kb on + strand, within PGA1_c00380at 43.847 kb on + strand, within PGA1_c00380at 43.894 kb on + strandat 43.902 kb on - strandat 43.904 kb on + strandat 43.919 kb on - strandat 43.986 kb on + strandat 43.999 kb on + strandat 43.999 kb on + strandat 44.002 kb on - strandat 44.007 kb on - strandat 44.013 kb on + strandat 44.019 kb on - strandat 44.044 kb on - strandat 44.066 kb on + strandat 44.073 kb on + strand, within PGA1_c00390at 44.127 kb on - strand, within PGA1_c00390at 44.150 kb on - strand, within PGA1_c00390at 44.165 kb on - strand, within PGA1_c00390at 44.171 kb on - strand, within PGA1_c00390at 44.173 kb on - strand, within PGA1_c00390at 44.229 kb on + strand, within PGA1_c00390at 44.229 kb on + strand, within PGA1_c00390at 44.237 kb on - strand, within PGA1_c00390at 44.237 kb on - strand, within PGA1_c00390at 44.237 kb on - strand, within PGA1_c00390at 44.237 kb on - strand, within PGA1_c00390at 44.237 kb on - strand, within PGA1_c00390at 44.237 kb on - strand, within PGA1_c00390at 44.281 kb on - strand, within PGA1_c00390at 44.297 kb on - strand, within PGA1_c00390at 44.313 kb on + strand, within PGA1_c00390at 44.358 kb on + strand, within PGA1_c00390at 44.358 kb on + strand, within PGA1_c00390at 44.366 kb on - strand, within PGA1_c00390at 44.366 kb on - strand, within PGA1_c00390at 44.366 kb on - strand, within PGA1_c00390at 44.368 kb on + strand, within PGA1_c00390at 44.376 kb on - strand, within PGA1_c00390at 44.415 kb on + strand, within PGA1_c00390at 44.427 kb on + strand, within PGA1_c00390at 44.429 kb on + strand, within PGA1_c00390at 44.429 kb on + strand, within PGA1_c00390at 44.435 kb on - strand, within PGA1_c00390at 44.437 kb on + strand, within PGA1_c00390at 44.478 kb on + strand, within PGA1_c00390at 44.491 kb on + strand, within PGA1_c00390at 44.582 kb on + strand, within PGA1_c00400at 44.594 kb on + strand, within PGA1_c00400at 44.609 kb on - strand, within PGA1_c00400at 44.688 kb on + strand, within PGA1_c00400at 44.688 kb on + strand, within PGA1_c00400at 44.694 kb on - strand, within PGA1_c00400at 44.696 kb on - strand, within PGA1_c00400at 44.696 kb on - strand, within PGA1_c00400at 44.718 kb on - strand, within PGA1_c00400at 44.767 kb on + strandat 44.792 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.810 kb on + strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.818 kb on - strandat 44.867 kb on - strandat 44.867 kb on - strandat 44.869 kb on + strandat 44.879 kb on + strandat 44.882 kb on - strandat 44.892 kb on + strandat 44.926 kb on + strandat 44.926 kb on + strandat 44.928 kb on + strandat 44.936 kb on - strandat 44.936 kb on - strandat 44.994 kb on - strand, within PGA1_c00410at 45.052 kb on + strand, within PGA1_c00410at 45.087 kb on + strand, within PGA1_c00410at 45.089 kb on - strand, within PGA1_c00410at 45.090 kb on - strand, within PGA1_c00410at 45.096 kb on + strand, within PGA1_c00410at 45.106 kb on + strand, within PGA1_c00410at 45.109 kb on - strand, within PGA1_c00410at 45.109 kb on - strand, within PGA1_c00410at 45.111 kb on + strand, within PGA1_c00410at 45.127 kb on - strand, within PGA1_c00410at 45.155 kb on + strand, within PGA1_c00410at 45.156 kb on + strand, within PGA1_c00410at 45.156 kb on - strand, within PGA1_c00410at 45.156 kb on - strand, within PGA1_c00410at 45.156 kb on - strand, within PGA1_c00410at 45.175 kb on + strand, within PGA1_c00410at 45.188 kb on - strand, within PGA1_c00410at 45.196 kb on + strand, within PGA1_c00410at 45.196 kb on + strand, within PGA1_c00410at 45.203 kb on + strand, within PGA1_c00410at 45.221 kb on + strand, within PGA1_c00410at 45.244 kb on - strand, within PGA1_c00410at 45.315 kb on + strand, within PGA1_c00410at 45.320 kb on - strand, within PGA1_c00410at 45.363 kb on + strand, within PGA1_c00410at 45.397 kb on + strand, within PGA1_c00410at 45.397 kb on + strand, within PGA1_c00410at 45.402 kb on + strand, within PGA1_c00410at 45.405 kb on - strand, within PGA1_c00410at 45.449 kb on + strand, within PGA1_c00410at 45.457 kb on - strand, within PGA1_c00410at 45.514 kb on + strand, within PGA1_c00410at 45.527 kb on + strand, within PGA1_c00410at 45.529 kb on - strand, within PGA1_c00410at 45.530 kb on - strand, within PGA1_c00410at 45.566 kb on - strand, within PGA1_c00410at 45.582 kb on - strand, within PGA1_c00410at 45.588 kb on - strand, within PGA1_c00410at 45.645 kb on - strand, within PGA1_c00410at 45.650 kb on + strand, within PGA1_c00410at 45.660 kb on + strand, within PGA1_c00410at 45.668 kb on - strand, within PGA1_c00410at 45.668 kb on - strand, within PGA1_c00410at 45.668 kb on - strand, within PGA1_c00410at 45.682 kb on - strand, within PGA1_c00410at 45.709 kb on + strand, within PGA1_c00410at 45.730 kb on + strand, within PGA1_c00410at 45.773 kb on - strand, within PGA1_c00410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
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43,585 - PGA1_c00380 0.45 +3.6
43,585 - PGA1_c00380 0.45 +1.8
43,585 - PGA1_c00380 0.45 -1.2
43,600 - PGA1_c00380 0.47 -3.1
43,658 + PGA1_c00380 0.56 +1.1
43,666 - PGA1_c00380 0.57 -1.5
43,695 + PGA1_c00380 0.61 +0.5
43,695 + PGA1_c00380 0.61 +3.2
43,695 + PGA1_c00380 0.61 +0.4
43,695 + PGA1_c00380 0.61 -1.5
43,697 + PGA1_c00380 0.61 -0.2
43,734 + PGA1_c00380 0.67 +0.3
43,744 + PGA1_c00380 0.68 -1.6
43,752 - PGA1_c00380 0.69 -1.6
43,754 + PGA1_c00380 0.70 -1.8
43,770 + PGA1_c00380 0.72 +0.8
43,786 + PGA1_c00380 0.74 -2.5
43,803 + PGA1_c00380 0.77 -2.8
43,804 + PGA1_c00380 0.77 -1.8
43,804 + PGA1_c00380 0.77 +0.0
43,804 + PGA1_c00380 0.77 +1.4
43,827 + PGA1_c00380 0.80 -0.9
43,835 - PGA1_c00380 0.81 +1.5
43,837 + PGA1_c00380 0.82 +2.6
43,840 - PGA1_c00380 0.82 +2.2
43,842 + PGA1_c00380 0.82 +1.5
43,847 + PGA1_c00380 0.83 -1.5
43,894 + -2.0
43,902 - +2.7
43,904 + -1.6
43,919 - +1.1
43,986 + -0.1
43,999 + +0.9
43,999 + -1.2
44,002 - +2.8
44,007 - -0.8
44,013 + -2.9
44,019 - -2.7
44,044 - +2.8
44,066 + +3.4
44,073 + PGA1_c00390 0.11 -2.0
44,127 - PGA1_c00390 0.21 -1.6
44,150 - PGA1_c00390 0.25 +2.2
44,165 - PGA1_c00390 0.28 -1.0
44,171 - PGA1_c00390 0.29 -0.1
44,173 - PGA1_c00390 0.29 -0.9
44,229 + PGA1_c00390 0.40 -3.0
44,229 + PGA1_c00390 0.40 -1.4
44,237 - PGA1_c00390 0.41 -1.4
44,237 - PGA1_c00390 0.41 +1.6
44,237 - PGA1_c00390 0.41 -0.4
44,237 - PGA1_c00390 0.41 +1.2
44,237 - PGA1_c00390 0.41 -1.0
44,237 - PGA1_c00390 0.41 -0.4
44,281 - PGA1_c00390 0.49 -0.3
44,297 - PGA1_c00390 0.52 -1.5
44,313 + PGA1_c00390 0.55 -2.5
44,358 + PGA1_c00390 0.63 +0.8
44,358 + PGA1_c00390 0.63 -1.3
44,366 - PGA1_c00390 0.65 +1.8
44,366 - PGA1_c00390 0.65 +1.5
44,366 - PGA1_c00390 0.65 -1.0
44,368 + PGA1_c00390 0.65 -2.6
44,376 - PGA1_c00390 0.67 -2.3
44,415 + PGA1_c00390 0.74 -1.1
44,427 + PGA1_c00390 0.76 -0.7
44,429 + PGA1_c00390 0.76 +1.8
44,429 + PGA1_c00390 0.76 -2.2
44,435 - PGA1_c00390 0.78 +0.0
44,437 + PGA1_c00390 0.78 +0.6
44,478 + PGA1_c00390 0.85 +0.6
44,491 + PGA1_c00390 0.88 +0.8
44,582 + PGA1_c00400 0.13 -2.1
44,594 + PGA1_c00400 0.18 +1.3
44,609 - PGA1_c00400 0.24 +3.6
44,688 + PGA1_c00400 0.58 +0.7
44,688 + PGA1_c00400 0.58 +2.8
44,694 - PGA1_c00400 0.61 +1.2
44,696 - PGA1_c00400 0.62 -3.3
44,696 - PGA1_c00400 0.62 +2.7
44,718 - PGA1_c00400 0.71 +3.5
44,767 + +1.2
44,792 + +1.8
44,810 + +2.0
44,810 + +1.5
44,810 + -1.7
44,810 + -2.0
44,810 + +0.3
44,810 + -2.6
44,810 + -2.1
44,810 + +2.8
44,810 + +0.4
44,810 + +1.6
44,810 + +2.4
44,810 + +2.6
44,810 + -1.4
44,810 + -2.4
44,810 + +1.6
44,810 + -1.2
44,810 + -2.0
44,810 + -1.9
44,810 + +1.8
44,810 + +0.6
44,810 + +1.3
44,810 + +1.6
44,818 - +1.1
44,818 - +1.8
44,818 - -1.4
44,818 - -2.0
44,818 - -1.4
44,818 - -0.4
44,818 - +0.5
44,818 - -1.4
44,818 - -2.6
44,818 - -1.0
44,818 - -2.2
44,818 - +3.5
44,818 - +3.5
44,818 - -1.8
44,818 - -1.3
44,818 - -0.4
44,818 - -1.6
44,818 - -0.1
44,818 - -2.0
44,818 - -2.6
44,867 - +1.2
44,867 - +3.5
44,869 + -1.4
44,879 + +1.8
44,882 - -1.8
44,892 + -2.2
44,926 + +1.9
44,926 + -1.5
44,928 + -1.4
44,936 - -2.3
44,936 - +2.5
44,994 - PGA1_c00410 0.13 +1.3
45,052 + PGA1_c00410 0.16 +1.0
45,087 + PGA1_c00410 0.18 -2.5
45,089 - PGA1_c00410 0.18 -1.8
45,090 - PGA1_c00410 0.18 +0.7
45,096 + PGA1_c00410 0.19 +1.9
45,106 + PGA1_c00410 0.19 -1.8
45,109 - PGA1_c00410 0.19 +2.9
45,109 - PGA1_c00410 0.19 +1.6
45,111 + PGA1_c00410 0.19 +1.8
45,127 - PGA1_c00410 0.20 +2.1
45,155 + PGA1_c00410 0.22 -1.3
45,156 + PGA1_c00410 0.22 -1.6
45,156 - PGA1_c00410 0.22 +2.4
45,156 - PGA1_c00410 0.22 -1.8
45,156 - PGA1_c00410 0.22 -1.4
45,175 + PGA1_c00410 0.23 +0.8
45,188 - PGA1_c00410 0.24 -0.7
45,196 + PGA1_c00410 0.24 +0.5
45,196 + PGA1_c00410 0.24 -2.1
45,203 + PGA1_c00410 0.25 +1.1
45,221 + PGA1_c00410 0.26 -0.5
45,244 - PGA1_c00410 0.27 +1.0
45,315 + PGA1_c00410 0.31 -2.2
45,320 - PGA1_c00410 0.32 -0.5
45,363 + PGA1_c00410 0.34 -1.8
45,397 + PGA1_c00410 0.36 -1.9
45,397 + PGA1_c00410 0.36 -1.1
45,402 + PGA1_c00410 0.36 -2.5
45,405 - PGA1_c00410 0.37 -2.0
45,449 + PGA1_c00410 0.39 -0.8
45,457 - PGA1_c00410 0.40 +1.2
45,514 + PGA1_c00410 0.43 +1.1
45,527 + PGA1_c00410 0.44 -2.1
45,529 - PGA1_c00410 0.44 -1.8
45,530 - PGA1_c00410 0.44 +0.8
45,566 - PGA1_c00410 0.46 +1.6
45,582 - PGA1_c00410 0.47 +3.7
45,588 - PGA1_c00410 0.47 -1.5
45,645 - PGA1_c00410 0.51 +2.8
45,650 + PGA1_c00410 0.51 +0.5
45,660 + PGA1_c00410 0.52 -2.1
45,668 - PGA1_c00410 0.52 -1.2
45,668 - PGA1_c00410 0.52 -0.1
45,668 - PGA1_c00410 0.52 +2.9
45,682 - PGA1_c00410 0.53 +2.0
45,709 + PGA1_c00410 0.54 +1.1
45,730 + PGA1_c00410 0.56 +1.2
45,773 - PGA1_c00410 0.58 -1.3

Or see this region's nucleotide sequence