Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00110

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_78p00100 and PGA1_78p00110 are separated by 96 nucleotides PGA1_78p00100: PGA1_78p00100 - flavohemoprotein Hmp, at 10,552 to 11,742 _78p00100 PGA1_78p00110: PGA1_78p00110 - putative transporter, MFS family, at 11,839 to 13,056 _78p00110 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -1 0 1 2 3 4at 10.893 kb on - strand, within PGA1_78p00100at 10.934 kb on - strand, within PGA1_78p00100at 11.230 kb on - strand, within PGA1_78p00100at 11.250 kb on - strand, within PGA1_78p00100at 11.287 kb on + strand, within PGA1_78p00100at 11.295 kb on - strand, within PGA1_78p00100at 11.603 kb on - strand, within PGA1_78p00100at 11.864 kb on + strandat 12.020 kb on + strand, within PGA1_78p00110at 12.047 kb on - strand, within PGA1_78p00110at 12.159 kb on + strand, within PGA1_78p00110at 12.287 kb on - strand, within PGA1_78p00110at 12.402 kb on + strand, within PGA1_78p00110at 12.459 kb on - strand, within PGA1_78p00110at 12.511 kb on + strand, within PGA1_78p00110at 12.958 kb on - strandat 12.958 kb on - strandat 12.958 kb on - strandat 13.044 kb on - strandat 13.136 kb on - strandat 13.222 kb on + strandat 13.306 kb on + strandat 13.306 kb on + strandat 13.311 kb on + strandat 13.314 kb on + strandat 13.461 kb on - strandat 13.484 kb on + strandat 13.510 kb on - strandat 13.515 kb on - strandat 13.537 kb on - strandat 13.547 kb on - strandat 13.574 kb on - strandat 13.602 kb on - strandat 13.788 kb on - strandat 13.802 kb on + strandat 13.852 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
remove
10,893 - PGA1_78p00100 0.29 -1.3
10,934 - PGA1_78p00100 0.32 +1.2
11,230 - PGA1_78p00100 0.57 +0.2
11,250 - PGA1_78p00100 0.59 +1.8
11,287 + PGA1_78p00100 0.62 +3.9
11,295 - PGA1_78p00100 0.62 +1.4
11,603 - PGA1_78p00100 0.88 +1.9
11,864 + -1.0
12,020 + PGA1_78p00110 0.15 -0.6
12,047 - PGA1_78p00110 0.17 +1.6
12,159 + PGA1_78p00110 0.26 -1.1
12,287 - PGA1_78p00110 0.37 +2.7
12,402 + PGA1_78p00110 0.46 +2.1
12,459 - PGA1_78p00110 0.51 +2.7
12,511 + PGA1_78p00110 0.55 +1.5
12,958 - -1.1
12,958 - +0.9
12,958 - +1.3
13,044 - +0.2
13,136 - -0.3
13,222 + -0.0
13,306 + +2.6
13,306 + -1.4
13,311 + +2.5
13,314 + +2.5
13,461 - +3.4
13,484 + +2.7
13,510 - +1.3
13,515 - +2.3
13,537 - +0.0
13,547 - +1.1
13,574 - +2.7
13,602 - +1.7
13,788 - +3.0
13,802 + +3.1
13,852 - +2.4

Or see this region's nucleotide sequence