Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00630 and PGA1_262p00640 are separated by 324 nucleotides PGA1_262p00640 and PGA1_262p00650 are separated by 96 nucleotides
PGA1_262p00630: PGA1_262p00630 - Predicted membrane protein, at 72,707 to 73,756
_262p00630
PGA1_262p00640: PGA1_262p00640 - Hemolysin-type calcium-binding repeat (2 copies)., at 74,081 to 75,160
_262p00640
PGA1_262p00650: PGA1_262p00650 - putative lytic murein transglycosylase, at 75,257 to 76,432
_262p00650
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 73.148 kb on + strand, within PGA1_262p00630 at 73.150 kb on - strand, within PGA1_262p00630 at 73.203 kb on - strand, within PGA1_262p00630 at 73.227 kb on + strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.236 kb on - strand, within PGA1_262p00630 at 73.252 kb on + strand, within PGA1_262p00630 at 73.253 kb on - strand, within PGA1_262p00630 at 73.288 kb on + strand, within PGA1_262p00630 at 73.289 kb on - strand, within PGA1_262p00630 at 73.296 kb on - strand, within PGA1_262p00630 at 73.298 kb on + strand, within PGA1_262p00630 at 73.298 kb on + strand, within PGA1_262p00630 at 73.299 kb on + strand, within PGA1_262p00630 at 73.299 kb on + strand, within PGA1_262p00630 at 73.306 kb on - strand, within PGA1_262p00630 at 73.409 kb on + strand, within PGA1_262p00630 at 73.409 kb on + strand, within PGA1_262p00630 at 73.540 kb on + strand, within PGA1_262p00630 at 73.548 kb on - strand, within PGA1_262p00630 at 73.617 kb on - strand, within PGA1_262p00630 at 73.617 kb on - strand, within PGA1_262p00630 at 73.644 kb on + strand, within PGA1_262p00630 at 73.647 kb on - strand, within PGA1_262p00630 at 73.717 kb on + strand at 73.717 kb on + strand at 73.717 kb on + strand at 73.717 kb on + strand at 73.718 kb on + strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.725 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.726 kb on - strand at 73.736 kb on + strand at 73.744 kb on - strand at 73.744 kb on - strand at 73.751 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.798 kb on + strand at 73.808 kb on + strand at 73.808 kb on + strand at 73.854 kb on + strand at 73.858 kb on - strand at 73.862 kb on - strand at 73.862 kb on - strand at 73.869 kb on + strand at 73.879 kb on - strand at 73.891 kb on - strand at 73.923 kb on + strand at 73.924 kb on + strand at 73.926 kb on + strand at 73.932 kb on - strand at 73.942 kb on - strand at 74.002 kb on + strand at 74.010 kb on - strand at 74.025 kb on - strand at 74.025 kb on - strand at 74.053 kb on + strand at 74.093 kb on + strand at 74.147 kb on + strand at 74.166 kb on - strand at 74.196 kb on + strand, within PGA1_262p00640 at 74.196 kb on + strand, within PGA1_262p00640 at 74.196 kb on + strand, within PGA1_262p00640 at 74.204 kb on - strand, within PGA1_262p00640 at 74.204 kb on - strand, within PGA1_262p00640 at 74.204 kb on - strand, within PGA1_262p00640 at 74.271 kb on + strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.324 kb on + strand, within PGA1_262p00640 at 74.327 kb on - strand, within PGA1_262p00640 at 74.329 kb on + strand, within PGA1_262p00640 at 74.336 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.393 kb on + strand, within PGA1_262p00640 at 74.401 kb on - strand, within PGA1_262p00640 at 74.515 kb on + strand, within PGA1_262p00640 at 74.543 kb on + strand, within PGA1_262p00640 at 74.587 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.662 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.698 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.718 kb on - strand, within PGA1_262p00640 at 74.754 kb on + strand, within PGA1_262p00640 at 74.761 kb on - strand, within PGA1_262p00640 at 74.761 kb on - strand, within PGA1_262p00640 at 74.807 kb on + strand, within PGA1_262p00640 at 74.869 kb on - strand, within PGA1_262p00640 at 74.898 kb on + strand, within PGA1_262p00640 at 75.089 kb on + strand at 75.089 kb on + strand at 75.089 kb on + strand at 75.097 kb on - strand at 75.097 kb on - strand at 75.102 kb on + strand at 75.195 kb on - strand at 75.230 kb on + strand at 75.248 kb on + strand at 75.258 kb on - strand at 75.258 kb on - strand at 75.272 kb on + strand at 75.315 kb on - strand at 75.426 kb on + strand, within PGA1_262p00650 at 75.673 kb on - strand, within PGA1_262p00650 at 75.715 kb on + strand, within PGA1_262p00650 at 75.938 kb on - strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.055 kb on + strand, within PGA1_262p00650
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 73,148 + PGA1_262p00630 0.42 -1.9 73,150 - PGA1_262p00630 0.42 +0.7 73,203 - PGA1_262p00630 0.47 +1.7 73,227 + PGA1_262p00630 0.50 +1.6 73,236 - PGA1_262p00630 0.50 -1.0 73,236 - PGA1_262p00630 0.50 -1.0 73,236 - PGA1_262p00630 0.50 +2.9 73,252 + PGA1_262p00630 0.52 -2.2 73,253 - PGA1_262p00630 0.52 +1.1 73,288 + PGA1_262p00630 0.55 -2.4 73,289 - PGA1_262p00630 0.55 -0.7 73,296 - PGA1_262p00630 0.56 +0.5 73,298 + PGA1_262p00630 0.56 +1.1 73,298 + PGA1_262p00630 0.56 -2.2 73,299 + PGA1_262p00630 0.56 -2.4 73,299 + PGA1_262p00630 0.56 +0.5 73,306 - PGA1_262p00630 0.57 -1.9 73,409 + PGA1_262p00630 0.67 +1.7 73,409 + PGA1_262p00630 0.67 -1.7 73,540 + PGA1_262p00630 0.79 -1.2 73,548 - PGA1_262p00630 0.80 +1.3 73,617 - PGA1_262p00630 0.87 +1.0 73,617 - PGA1_262p00630 0.87 +1.7 73,644 + PGA1_262p00630 0.89 +0.7 73,647 - PGA1_262p00630 0.90 -2.6 73,717 + +1.9 73,717 + +1.8 73,717 + -0.0 73,717 + +1.0 73,718 + +0.7 73,725 - -0.8 73,725 - +2.9 73,725 - +1.5 73,725 - -1.6 73,725 - +0.7 73,725 - -2.7 73,725 - -0.2 73,725 - -0.6 73,725 - -0.7 73,725 - +0.3 73,725 - -2.8 73,725 - +1.1 73,725 - -1.5 73,725 - -0.2 73,725 - +1.9 73,726 - +0.5 73,726 - -0.8 73,726 - -1.6 73,726 - -1.8 73,726 - +1.9 73,726 - -1.4 73,736 + +0.3 73,744 - -0.4 73,744 - -3.1 73,751 + -0.2 73,798 + -1.2 73,798 + -0.2 73,798 + -1.7 73,798 + +1.4 73,798 + +0.9 73,808 + +1.8 73,808 + +1.1 73,854 + +1.1 73,858 - -2.1 73,862 - -1.8 73,862 - +0.2 73,869 + -0.9 73,879 - -1.8 73,891 - -0.9 73,923 + -1.1 73,924 + +1.9 73,926 + -0.9 73,932 - -0.3 73,942 - -2.1 74,002 + +1.8 74,010 - +0.8 74,025 - -2.4 74,025 - +3.9 74,053 + -1.2 74,093 + +2.1 74,147 + -0.2 74,166 - +1.4 74,196 + PGA1_262p00640 0.11 +1.2 74,196 + PGA1_262p00640 0.11 -1.6 74,196 + PGA1_262p00640 0.11 -1.9 74,204 - PGA1_262p00640 0.11 +1.2 74,204 - PGA1_262p00640 0.11 -0.8 74,204 - PGA1_262p00640 0.11 +1.0 74,271 + PGA1_262p00640 0.18 +1.6 74,279 - PGA1_262p00640 0.18 -1.1 74,279 - PGA1_262p00640 0.18 +0.6 74,324 + PGA1_262p00640 0.23 -1.9 74,327 - PGA1_262p00640 0.23 +0.9 74,329 + PGA1_262p00640 0.23 +2.4 74,336 - PGA1_262p00640 0.24 +0.1 74,337 - PGA1_262p00640 0.24 +2.7 74,337 - PGA1_262p00640 0.24 -0.5 74,393 + PGA1_262p00640 0.29 -0.4 74,401 - PGA1_262p00640 0.30 -1.9 74,515 + PGA1_262p00640 0.40 -0.2 74,543 + PGA1_262p00640 0.43 -0.2 74,587 + PGA1_262p00640 0.47 +2.3 74,645 + PGA1_262p00640 0.52 +2.0 74,645 + PGA1_262p00640 0.52 -2.1 74,645 + PGA1_262p00640 0.52 -0.5 74,662 - PGA1_262p00640 0.54 -0.9 74,680 - PGA1_262p00640 0.55 +2.0 74,680 - PGA1_262p00640 0.55 -1.5 74,698 + PGA1_262p00640 0.57 -1.7 74,710 + PGA1_262p00640 0.58 +2.0 74,710 + PGA1_262p00640 0.58 -1.3 74,718 - PGA1_262p00640 0.59 +2.2 74,754 + PGA1_262p00640 0.62 -1.2 74,761 - PGA1_262p00640 0.63 -2.2 74,761 - PGA1_262p00640 0.63 -2.6 74,807 + PGA1_262p00640 0.67 -3.1 74,869 - PGA1_262p00640 0.73 +1.8 74,898 + PGA1_262p00640 0.76 -2.6 75,089 + -3.0 75,089 + +2.8 75,089 + -1.6 75,097 - +0.9 75,097 - +0.7 75,102 + -1.5 75,195 - -1.5 75,230 + -1.3 75,248 + -1.9 75,258 - +0.7 75,258 - +1.7 75,272 + +2.0 75,315 - +1.3 75,426 + PGA1_262p00650 0.14 +1.4 75,673 - PGA1_262p00650 0.35 +0.4 75,715 + PGA1_262p00650 0.39 -1.8 75,938 - PGA1_262p00650 0.58 -0.4 76,014 + PGA1_262p00650 0.64 -2.6 76,014 + PGA1_262p00650 0.64 -0.9 76,022 - PGA1_262p00650 0.65 -0.7 76,022 - PGA1_262p00650 0.65 -1.8 76,022 - PGA1_262p00650 0.65 -2.5 76,055 + PGA1_262p00650 0.68 +1.0
Or see this region's nucleotide sequence