Experiment: m.b. Dimethyl Sulfoxide 9 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3153 and HP15_3154 are separated by 130 nucleotides HP15_3154 and HP15_3155 are separated by 18 nucleotides HP15_3155 and HP15_3156 are separated by 15 nucleotides
HP15_3153: HP15_3153 - protein containing cyclic nucleotide-binding domain, at 3,306,499 to 3,307,197
_3153
HP15_3154: HP15_3154 - class II aldolase/adducin family protein, at 3,307,328 to 3,308,098
_3154
HP15_3155: HP15_3155 - metal dependent phosphohydrolase, at 3,308,117 to 3,308,713
_3155
HP15_3156: HP15_3156 - glutamate-ammonia ligase, at 3,308,729 to 3,310,087
_3156
Position (kb)
3308
3309 Strain fitness (log2 ratio)
-2
-1
0
1 at 3307.201 kb on - strand at 3307.276 kb on + strand at 3307.311 kb on + strand at 3307.311 kb on + strand at 3307.311 kb on + strand at 3307.311 kb on + strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.319 kb on - strand at 3307.324 kb on - strand at 3307.330 kb on + strand at 3307.376 kb on + strand at 3307.419 kb on + strand, within HP15_3154 at 3307.479 kb on - strand, within HP15_3154 at 3307.535 kb on + strand, within HP15_3154 at 3307.559 kb on - strand, within HP15_3154 at 3307.581 kb on - strand, within HP15_3154 at 3307.661 kb on + strand, within HP15_3154 at 3307.692 kb on + strand, within HP15_3154 at 3307.717 kb on + strand, within HP15_3154 at 3307.724 kb on + strand, within HP15_3154 at 3307.725 kb on - strand, within HP15_3154 at 3307.928 kb on + strand, within HP15_3154 at 3307.936 kb on - strand, within HP15_3154 at 3308.023 kb on + strand at 3308.023 kb on + strand at 3308.032 kb on - strand at 3308.171 kb on + strand at 3308.171 kb on + strand at 3308.253 kb on - strand, within HP15_3155 at 3308.253 kb on - strand, within HP15_3155 at 3308.393 kb on - strand, within HP15_3155 at 3308.474 kb on - strand, within HP15_3155 at 3308.620 kb on - strand, within HP15_3155 at 3308.763 kb on + strand at 3308.863 kb on + strand at 3308.982 kb on - strand, within HP15_3156 at 3308.983 kb on - strand, within HP15_3156 at 3308.983 kb on - strand, within HP15_3156 at 3309.095 kb on + strand, within HP15_3156 at 3309.208 kb on + strand, within HP15_3156 at 3309.230 kb on + strand, within HP15_3156 at 3309.241 kb on + strand, within HP15_3156 at 3309.306 kb on - strand, within HP15_3156 at 3309.326 kb on + strand, within HP15_3156 at 3309.345 kb on + strand, within HP15_3156 at 3309.347 kb on + strand, within HP15_3156 at 3309.473 kb on - strand, within HP15_3156 at 3309.498 kb on + strand, within HP15_3156 at 3309.541 kb on + strand, within HP15_3156 at 3309.549 kb on - strand, within HP15_3156 at 3309.564 kb on + strand, within HP15_3156 at 3309.585 kb on - strand, within HP15_3156 at 3309.613 kb on + strand, within HP15_3156 at 3309.618 kb on + strand, within HP15_3156 at 3309.621 kb on - strand, within HP15_3156 at 3309.621 kb on - strand, within HP15_3156 at 3309.637 kb on - strand, within HP15_3156 at 3309.642 kb on + strand, within HP15_3156
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 9 vol% remove 3,307,201 - +0.0 3,307,276 + -0.1 3,307,311 + +0.2 3,307,311 + +1.7 3,307,311 + +0.2 3,307,311 + -0.0 3,307,319 - -0.1 3,307,319 - -0.0 3,307,319 - +0.2 3,307,319 - -0.0 3,307,319 - -0.6 3,307,319 - -0.0 3,307,319 - +0.0 3,307,319 - -0.1 3,307,319 - +0.1 3,307,324 - -0.2 3,307,330 + +0.2 3,307,376 + +0.4 3,307,419 + HP15_3154 0.12 -0.3 3,307,479 - HP15_3154 0.20 -1.0 3,307,535 + HP15_3154 0.27 +0.4 3,307,559 - HP15_3154 0.30 +0.0 3,307,581 - HP15_3154 0.33 -0.4 3,307,661 + HP15_3154 0.43 +0.8 3,307,692 + HP15_3154 0.47 +0.7 3,307,717 + HP15_3154 0.50 -2.0 3,307,724 + HP15_3154 0.51 -0.2 3,307,725 - HP15_3154 0.51 +0.0 3,307,928 + HP15_3154 0.78 +0.2 3,307,936 - HP15_3154 0.79 +0.9 3,308,023 + +0.2 3,308,023 + +0.3 3,308,032 - +0.4 3,308,171 + +0.3 3,308,171 + +0.2 3,308,253 - HP15_3155 0.23 -0.1 3,308,253 - HP15_3155 0.23 -0.6 3,308,393 - HP15_3155 0.46 +0.5 3,308,474 - HP15_3155 0.60 +0.1 3,308,620 - HP15_3155 0.84 -0.5 3,308,763 + +0.1 3,308,863 + +0.8 3,308,982 - HP15_3156 0.19 +0.7 3,308,983 - HP15_3156 0.19 -0.1 3,308,983 - HP15_3156 0.19 +0.3 3,309,095 + HP15_3156 0.27 -1.0 3,309,208 + HP15_3156 0.35 -0.1 3,309,230 + HP15_3156 0.37 -0.5 3,309,241 + HP15_3156 0.38 -0.9 3,309,306 - HP15_3156 0.42 -0.9 3,309,326 + HP15_3156 0.44 +0.2 3,309,345 + HP15_3156 0.45 +0.2 3,309,347 + HP15_3156 0.45 +0.7 3,309,473 - HP15_3156 0.55 +0.1 3,309,498 + HP15_3156 0.57 -0.6 3,309,541 + HP15_3156 0.60 +0.1 3,309,549 - HP15_3156 0.60 +0.2 3,309,564 + HP15_3156 0.61 +0.5 3,309,585 - HP15_3156 0.63 +0.6 3,309,613 + HP15_3156 0.65 -0.2 3,309,618 + HP15_3156 0.65 +0.3 3,309,621 - HP15_3156 0.66 +0.0 3,309,621 - HP15_3156 0.66 +1.0 3,309,637 - HP15_3156 0.67 -0.1 3,309,642 + HP15_3156 0.67 -0.1
Or see this region's nucleotide sequence