Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02980 and PGA1_c02990 are separated by 217 nucleotides PGA1_c02990 and PGA1_c03000 are separated by 97 nucleotides PGA1_c03000 and PGA1_c03010 are separated by 278 nucleotides PGA1_c03010 and PGA1_c03020 overlap by 1 nucleotides
PGA1_c02980: PGA1_c02980 - glutamate-cysteine ligase, at 286,715 to 288,085
_c02980
PGA1_c02990: PGA1_c02990 - hypothetical protein, at 288,303 to 288,557
_c02990
PGA1_c03000: PGA1_c03000 - YHS domain., at 288,655 to 289,128
_c03000
PGA1_c03010: PGA1_c03010 - glycerol-3-phosphate acyltransferase PlsY, at 289,407 to 290,012
_c03010
PGA1_c03020: PGA1_c03020 - dihydroorotase PyrC, at 290,012 to 291,322
_c03020
Position (kb) 288
289
290 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 288.081 kb on + strand at 288.081 kb on + strand at 288.089 kb on - strand at 288.095 kb on - strand at 288.102 kb on + strand at 288.110 kb on + strand at 288.110 kb on - strand at 288.118 kb on - strand at 288.135 kb on - strand at 288.185 kb on + strand at 288.193 kb on - strand at 288.198 kb on - strand at 288.198 kb on - strand at 288.201 kb on + strand at 288.241 kb on - strand at 288.249 kb on + strand at 288.278 kb on + strand at 288.278 kb on + strand at 288.278 kb on + strand at 288.278 kb on + strand at 288.286 kb on - strand at 288.286 kb on - strand at 288.294 kb on + strand at 288.294 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.295 kb on + strand at 288.300 kb on + strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.303 kb on - strand at 288.357 kb on - strand, within PGA1_c02990 at 288.357 kb on - strand, within PGA1_c02990 at 288.373 kb on - strand, within PGA1_c02990 at 288.380 kb on - strand, within PGA1_c02990 at 288.380 kb on - strand, within PGA1_c02990 at 288.454 kb on + strand, within PGA1_c02990 at 288.454 kb on + strand, within PGA1_c02990 at 288.460 kb on + strand, within PGA1_c02990 at 288.465 kb on + strand, within PGA1_c02990 at 288.480 kb on - strand, within PGA1_c02990 at 288.487 kb on + strand, within PGA1_c02990 at 288.495 kb on - strand, within PGA1_c02990 at 288.526 kb on - strand, within PGA1_c02990 at 288.554 kb on + strand at 288.554 kb on + strand at 288.589 kb on - strand at 288.596 kb on - strand at 288.596 kb on - strand at 288.646 kb on + strand at 288.653 kb on + strand at 288.677 kb on - strand at 288.693 kb on + strand at 288.747 kb on - strand, within PGA1_c03000 at 288.758 kb on - strand, within PGA1_c03000 at 288.768 kb on + strand, within PGA1_c03000 at 288.768 kb on + strand, within PGA1_c03000 at 288.768 kb on + strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.776 kb on - strand, within PGA1_c03000 at 288.831 kb on - strand, within PGA1_c03000 at 288.898 kb on - strand, within PGA1_c03000 at 288.961 kb on + strand, within PGA1_c03000 at 288.976 kb on - strand, within PGA1_c03000 at 289.005 kb on + strand, within PGA1_c03000 at 289.005 kb on + strand, within PGA1_c03000 at 289.013 kb on - strand, within PGA1_c03000 at 289.014 kb on - strand, within PGA1_c03000 at 289.036 kb on - strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.065 kb on + strand, within PGA1_c03000 at 289.070 kb on + strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.073 kb on - strand, within PGA1_c03000 at 289.088 kb on - strand at 289.097 kb on + strand at 289.130 kb on + strand at 289.131 kb on + strand at 289.138 kb on - strand at 289.139 kb on - strand at 289.158 kb on - strand at 289.169 kb on + strand at 289.169 kb on + strand at 289.194 kb on - strand at 289.233 kb on - strand at 289.243 kb on - strand at 289.278 kb on + strand at 289.333 kb on - strand at 289.352 kb on - strand at 289.413 kb on - strand at 290.017 kb on - strand at 290.065 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 288,081 + -1.0 288,081 + +1.9 288,089 - +0.3 288,095 - -1.3 288,102 + -1.9 288,110 + +2.3 288,110 - -2.3 288,118 - +1.4 288,135 - +2.7 288,185 + -2.2 288,193 - +1.2 288,198 - +3.3 288,198 - -1.2 288,201 + +1.5 288,241 - -2.0 288,249 + -2.9 288,278 + -0.4 288,278 + +1.5 288,278 + +0.5 288,278 + +0.6 288,286 - -2.4 288,286 - -1.3 288,294 + +1.1 288,294 + -1.3 288,295 + -1.6 288,295 + +3.3 288,295 + -2.8 288,295 + +1.9 288,295 + +2.0 288,295 + -1.6 288,295 + -1.2 288,295 + +2.3 288,295 + -1.4 288,300 + -1.8 288,303 - +2.0 288,303 - -1.3 288,303 - -1.4 288,303 - -0.2 288,303 - -0.7 288,357 - PGA1_c02990 0.21 +1.6 288,357 - PGA1_c02990 0.21 -2.0 288,373 - PGA1_c02990 0.27 +2.7 288,380 - PGA1_c02990 0.30 +1.0 288,380 - PGA1_c02990 0.30 +0.1 288,454 + PGA1_c02990 0.59 -2.0 288,454 + PGA1_c02990 0.59 +0.1 288,460 + PGA1_c02990 0.62 -2.0 288,465 + PGA1_c02990 0.64 -0.7 288,480 - PGA1_c02990 0.69 +2.0 288,487 + PGA1_c02990 0.72 -1.9 288,495 - PGA1_c02990 0.75 -3.1 288,526 - PGA1_c02990 0.87 -1.3 288,554 + -2.1 288,554 + -0.9 288,589 - -0.1 288,596 - +3.0 288,596 - +1.9 288,646 + -1.4 288,653 + +2.0 288,677 - +2.4 288,693 + -2.4 288,747 - PGA1_c03000 0.19 -2.2 288,758 - PGA1_c03000 0.22 -1.0 288,768 + PGA1_c03000 0.24 +2.7 288,768 + PGA1_c03000 0.24 -1.4 288,768 + PGA1_c03000 0.24 +0.2 288,776 - PGA1_c03000 0.26 +2.3 288,776 - PGA1_c03000 0.26 -1.9 288,776 - PGA1_c03000 0.26 -2.3 288,776 - PGA1_c03000 0.26 +1.5 288,776 - PGA1_c03000 0.26 -2.3 288,776 - PGA1_c03000 0.26 -0.0 288,831 - PGA1_c03000 0.37 -2.1 288,898 - PGA1_c03000 0.51 +1.5 288,961 + PGA1_c03000 0.65 -1.5 288,976 - PGA1_c03000 0.68 -1.0 289,005 + PGA1_c03000 0.74 +1.6 289,005 + PGA1_c03000 0.74 -2.6 289,013 - PGA1_c03000 0.76 -3.1 289,014 - PGA1_c03000 0.76 +3.7 289,036 - PGA1_c03000 0.80 +3.2 289,065 + PGA1_c03000 0.86 -2.8 289,065 + PGA1_c03000 0.86 -2.8 289,070 + PGA1_c03000 0.88 -2.6 289,073 - PGA1_c03000 0.88 -1.1 289,073 - PGA1_c03000 0.88 -1.6 289,073 - PGA1_c03000 0.88 -2.7 289,088 - +1.2 289,097 + -1.3 289,130 + +2.3 289,131 + -0.3 289,138 - -1.4 289,139 - +0.3 289,158 - +2.9 289,169 + -2.1 289,169 + +0.8 289,194 - +0.3 289,233 - +1.3 289,243 - +2.0 289,278 + -1.1 289,333 - -0.8 289,352 - +1.3 289,413 - +1.5 290,017 - -1.8 290,065 - +1.4
Or see this region's nucleotide sequence