Experiment: m.b. Dimethyl Sulfoxide 9 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2676 and HP15_2677 are separated by 35 nucleotides HP15_2677 and HP15_2678 are separated by 78 nucleotides HP15_2678 and HP15_2679 are separated by 179 nucleotides HP15_2679 and HP15_2680 are separated by 23 nucleotides
HP15_2676: HP15_2676 - proton/sodium-glutamate symport protein, at 2,824,961 to 2,826,241
_2676
HP15_2677: HP15_2677 - conserved hypothetical protein, secreted, at 2,826,277 to 2,826,753
_2677
HP15_2678: HP15_2678 - shikimate kinase, at 2,826,832 to 2,827,356
_2678
HP15_2679: HP15_2679 - transglycosylase SLT domain protein, at 2,827,536 to 2,828,237
_2679
HP15_2680: HP15_2680 - protein containing LysR, substrate-binding / Bacterial regulatory protein, LysR, at 2,828,261 to 2,829,193
_2680
Position (kb)
2826
2827
2828 Strain fitness (log2 ratio)
-1
0
1 at 2825.834 kb on - strand, within HP15_2676 at 2825.846 kb on - strand, within HP15_2676 at 2825.914 kb on + strand, within HP15_2676 at 2825.917 kb on - strand, within HP15_2676 at 2825.917 kb on - strand, within HP15_2676 at 2825.922 kb on - strand, within HP15_2676 at 2825.922 kb on - strand, within HP15_2676 at 2826.064 kb on + strand, within HP15_2676 at 2826.101 kb on - strand, within HP15_2676 at 2826.103 kb on + strand, within HP15_2676 at 2826.103 kb on + strand, within HP15_2676 at 2826.111 kb on - strand, within HP15_2676 at 2826.111 kb on - strand, within HP15_2676 at 2826.143 kb on + strand at 2826.283 kb on - strand at 2826.307 kb on + strand at 2826.610 kb on - strand, within HP15_2677 at 2826.638 kb on - strand, within HP15_2677 at 2826.688 kb on - strand, within HP15_2677 at 2826.690 kb on + strand, within HP15_2677 at 2826.864 kb on - strand at 2827.034 kb on - strand, within HP15_2678 at 2827.064 kb on + strand, within HP15_2678 at 2827.082 kb on - strand, within HP15_2678 at 2827.090 kb on + strand, within HP15_2678 at 2827.191 kb on + strand, within HP15_2678 at 2827.470 kb on - strand at 2827.544 kb on + strand at 2827.554 kb on + strand at 2827.677 kb on - strand, within HP15_2679 at 2827.748 kb on - strand, within HP15_2679 at 2827.750 kb on + strand, within HP15_2679 at 2827.780 kb on - strand, within HP15_2679 at 2827.784 kb on - strand, within HP15_2679 at 2827.839 kb on + strand, within HP15_2679 at 2827.889 kb on + strand, within HP15_2679 at 2827.889 kb on + strand, within HP15_2679 at 2827.889 kb on - strand, within HP15_2679 at 2827.908 kb on - strand, within HP15_2679 at 2827.962 kb on + strand, within HP15_2679 at 2828.098 kb on - strand, within HP15_2679 at 2828.098 kb on - strand, within HP15_2679 at 2828.176 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 9 vol% remove 2,825,834 - HP15_2676 0.68 +0.7 2,825,846 - HP15_2676 0.69 -0.1 2,825,914 + HP15_2676 0.74 -1.0 2,825,917 - HP15_2676 0.75 +0.6 2,825,917 - HP15_2676 0.75 +0.5 2,825,922 - HP15_2676 0.75 -0.7 2,825,922 - HP15_2676 0.75 +0.2 2,826,064 + HP15_2676 0.86 +0.2 2,826,101 - HP15_2676 0.89 +0.1 2,826,103 + HP15_2676 0.89 -0.3 2,826,103 + HP15_2676 0.89 -0.3 2,826,111 - HP15_2676 0.90 +0.1 2,826,111 - HP15_2676 0.90 -0.1 2,826,143 + +0.1 2,826,283 - -0.1 2,826,307 + +0.2 2,826,610 - HP15_2677 0.70 +0.2 2,826,638 - HP15_2677 0.76 -0.2 2,826,688 - HP15_2677 0.86 -0.8 2,826,690 + HP15_2677 0.87 +0.0 2,826,864 - -0.2 2,827,034 - HP15_2678 0.38 +0.4 2,827,064 + HP15_2678 0.44 -0.6 2,827,082 - HP15_2678 0.48 -0.3 2,827,090 + HP15_2678 0.49 -0.7 2,827,191 + HP15_2678 0.68 -0.6 2,827,470 - +0.9 2,827,544 + +0.0 2,827,554 + -0.3 2,827,677 - HP15_2679 0.20 -0.2 2,827,748 - HP15_2679 0.30 -0.7 2,827,750 + HP15_2679 0.30 +0.6 2,827,780 - HP15_2679 0.35 -0.2 2,827,784 - HP15_2679 0.35 -0.2 2,827,839 + HP15_2679 0.43 +0.0 2,827,889 + HP15_2679 0.50 -0.8 2,827,889 + HP15_2679 0.50 -0.3 2,827,889 - HP15_2679 0.50 -1.2 2,827,908 - HP15_2679 0.53 +0.3 2,827,962 + HP15_2679 0.61 -0.3 2,828,098 - HP15_2679 0.80 -0.1 2,828,098 - HP15_2679 0.80 +0.7 2,828,176 - -0.1
Or see this region's nucleotide sequence