Experiment: m.b. Dimethyl Sulfoxide 9 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2310 and HP15_2311 are separated by 3 nucleotides HP15_2311 and HP15_2312 are separated by 8 nucleotides HP15_2312 and HP15_2313 are separated by 4 nucleotides HP15_2313 and HP15_2314 are separated by 1 nucleotides HP15_2314 and HP15_2315 overlap by 8 nucleotides
HP15_2310: HP15_2310 - flagellar biosynthesis protein FliR, at 2,432,741 to 2,433,526
_2310
HP15_2311: HP15_2311 - flagellar biosynthetic protein FliQ, at 2,433,530 to 2,433,799
_2311
HP15_2312: HP15_2312 - flagellar biosynthesis protein FliP, at 2,433,808 to 2,434,584
_2312
HP15_2313: HP15_2313 - flagellar biosynthesis protein, FliO, at 2,434,589 to 2,435,038
_2313
HP15_2314: HP15_2314 - flagellar motor switch protein FliN-like protein, at 2,435,040 to 2,435,531
_2314
HP15_2315: HP15_2315 - flagellar motor switch protein FliM-like protein, at 2,435,524 to 2,436,522
_2315
Position (kb)
2433
2434
2435 Strain fitness (log2 ratio)
-1
0
1 at 2433.022 kb on + strand, within HP15_2310 at 2433.030 kb on - strand, within HP15_2310 at 2433.051 kb on + strand, within HP15_2310 at 2433.153 kb on - strand, within HP15_2310 at 2433.153 kb on - strand, within HP15_2310 at 2433.162 kb on - strand, within HP15_2310 at 2433.170 kb on - strand, within HP15_2310 at 2433.191 kb on + strand, within HP15_2310 at 2433.199 kb on - strand, within HP15_2310 at 2433.324 kb on + strand, within HP15_2310 at 2433.362 kb on + strand, within HP15_2310 at 2433.369 kb on + strand, within HP15_2310 at 2433.385 kb on + strand, within HP15_2310 at 2433.553 kb on - strand at 2433.584 kb on - strand, within HP15_2311 at 2433.658 kb on - strand, within HP15_2311 at 2433.690 kb on + strand, within HP15_2311 at 2433.690 kb on + strand, within HP15_2311 at 2433.697 kb on + strand, within HP15_2311 at 2433.723 kb on - strand, within HP15_2311 at 2433.758 kb on - strand, within HP15_2311 at 2433.831 kb on - strand at 2433.896 kb on - strand, within HP15_2312 at 2433.925 kb on - strand, within HP15_2312 at 2434.012 kb on - strand, within HP15_2312 at 2434.062 kb on - strand, within HP15_2312 at 2434.088 kb on + strand, within HP15_2312 at 2434.144 kb on + strand, within HP15_2312 at 2434.167 kb on + strand, within HP15_2312 at 2434.175 kb on - strand, within HP15_2312 at 2434.214 kb on + strand, within HP15_2312 at 2434.263 kb on + strand, within HP15_2312 at 2434.270 kb on + strand, within HP15_2312 at 2434.293 kb on + strand, within HP15_2312 at 2434.295 kb on + strand, within HP15_2312 at 2434.395 kb on - strand, within HP15_2312 at 2434.427 kb on + strand, within HP15_2312 at 2434.542 kb on - strand at 2434.587 kb on + strand at 2434.611 kb on + strand at 2434.611 kb on + strand at 2434.705 kb on - strand, within HP15_2313 at 2434.707 kb on - strand, within HP15_2313 at 2434.731 kb on - strand, within HP15_2313 at 2434.763 kb on - strand, within HP15_2313 at 2434.860 kb on - strand, within HP15_2313 at 2434.903 kb on + strand, within HP15_2313 at 2434.937 kb on - strand, within HP15_2313 at 2435.084 kb on - strand at 2435.141 kb on + strand, within HP15_2314 at 2435.154 kb on - strand, within HP15_2314 at 2435.295 kb on + strand, within HP15_2314 at 2435.314 kb on + strand, within HP15_2314 at 2435.322 kb on - strand, within HP15_2314 at 2435.337 kb on + strand, within HP15_2314
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 9 vol% remove 2,433,022 + HP15_2310 0.36 -0.7 2,433,030 - HP15_2310 0.37 +0.2 2,433,051 + HP15_2310 0.39 -0.2 2,433,153 - HP15_2310 0.52 +0.3 2,433,153 - HP15_2310 0.52 +0.5 2,433,162 - HP15_2310 0.54 -0.0 2,433,170 - HP15_2310 0.55 +0.2 2,433,191 + HP15_2310 0.57 +1.6 2,433,199 - HP15_2310 0.58 +0.9 2,433,324 + HP15_2310 0.74 +0.2 2,433,362 + HP15_2310 0.79 +0.7 2,433,369 + HP15_2310 0.80 +0.1 2,433,385 + HP15_2310 0.82 +0.4 2,433,553 - -0.2 2,433,584 - HP15_2311 0.20 +0.1 2,433,658 - HP15_2311 0.47 +0.5 2,433,690 + HP15_2311 0.59 +0.2 2,433,690 + HP15_2311 0.59 +0.2 2,433,697 + HP15_2311 0.62 +0.7 2,433,723 - HP15_2311 0.71 +0.4 2,433,758 - HP15_2311 0.84 -0.5 2,433,831 - -0.6 2,433,896 - HP15_2312 0.11 +0.8 2,433,925 - HP15_2312 0.15 -0.0 2,434,012 - HP15_2312 0.26 +0.2 2,434,062 - HP15_2312 0.33 +0.3 2,434,088 + HP15_2312 0.36 +0.0 2,434,144 + HP15_2312 0.43 +0.2 2,434,167 + HP15_2312 0.46 +0.7 2,434,175 - HP15_2312 0.47 +0.3 2,434,214 + HP15_2312 0.52 +0.2 2,434,263 + HP15_2312 0.59 +0.3 2,434,270 + HP15_2312 0.59 +0.0 2,434,293 + HP15_2312 0.62 +0.1 2,434,295 + HP15_2312 0.63 +0.4 2,434,395 - HP15_2312 0.76 +0.5 2,434,427 + HP15_2312 0.80 -0.0 2,434,542 - +0.6 2,434,587 + +0.2 2,434,611 + +0.5 2,434,611 + -0.6 2,434,705 - HP15_2313 0.26 +0.3 2,434,707 - HP15_2313 0.26 +0.1 2,434,731 - HP15_2313 0.32 +0.4 2,434,763 - HP15_2313 0.39 +0.3 2,434,860 - HP15_2313 0.60 +0.2 2,434,903 + HP15_2313 0.70 +0.5 2,434,937 - HP15_2313 0.77 -0.5 2,435,084 - -0.0 2,435,141 + HP15_2314 0.21 +0.6 2,435,154 - HP15_2314 0.23 -0.5 2,435,295 + HP15_2314 0.52 +0.1 2,435,314 + HP15_2314 0.56 +0.2 2,435,322 - HP15_2314 0.57 +0.1 2,435,337 + HP15_2314 0.60 +0.2
Or see this region's nucleotide sequence