Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21460

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c21450 and PGA1_c21460 are separated by 71 nucleotidesPGA1_c21460 and PGA1_c21470 are separated by 136 nucleotides PGA1_c21450: PGA1_c21450 - phosphatase-like protein, at 2,222,682 to 2,224,226 _c21450 PGA1_c21460: PGA1_c21460 - hypothetical protein, at 2,224,298 to 2,224,738 _c21460 PGA1_c21470: PGA1_c21470 - endonuclease/exonuclease/phosphatase family protein, at 2,224,875 to 2,225,870 _c21470 Position (kb) 2224 2225Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2224.270 kb on - strandat 2224.272 kb on + strandat 2224.280 kb on - strandat 2224.464 kb on + strand, within PGA1_c21460at 2224.578 kb on + strand, within PGA1_c21460at 2224.591 kb on - strand, within PGA1_c21460at 2224.593 kb on + strand, within PGA1_c21460at 2224.596 kb on - strand, within PGA1_c21460at 2224.603 kb on + strand, within PGA1_c21460at 2224.611 kb on - strand, within PGA1_c21460at 2224.616 kb on + strand, within PGA1_c21460at 2224.624 kb on - strand, within PGA1_c21460at 2224.696 kb on + strandat 2224.711 kb on - strandat 2224.741 kb on - strandat 2224.748 kb on - strandat 2224.748 kb on - strandat 2224.748 kb on - strandat 2224.772 kb on - strandat 2224.814 kb on + strandat 2224.814 kb on + strandat 2224.817 kb on - strandat 2224.855 kb on - strandat 2224.875 kb on - strandat 2224.886 kb on - strandat 2224.967 kb on - strandat 2224.975 kb on - strand, within PGA1_c21470at 2225.012 kb on + strand, within PGA1_c21470at 2225.012 kb on + strand, within PGA1_c21470at 2225.020 kb on - strand, within PGA1_c21470at 2225.020 kb on - strand, within PGA1_c21470at 2225.020 kb on - strand, within PGA1_c21470at 2225.094 kb on - strand, within PGA1_c21470at 2225.122 kb on - strand, within PGA1_c21470at 2225.129 kb on - strand, within PGA1_c21470at 2225.198 kb on + strand, within PGA1_c21470at 2225.199 kb on + strand, within PGA1_c21470at 2225.199 kb on + strand, within PGA1_c21470at 2225.212 kb on - strand, within PGA1_c21470at 2225.212 kb on - strand, within PGA1_c21470at 2225.227 kb on + strand, within PGA1_c21470at 2225.240 kb on + strand, within PGA1_c21470at 2225.249 kb on - strand, within PGA1_c21470at 2225.262 kb on - strand, within PGA1_c21470at 2225.615 kb on + strand, within PGA1_c21470at 2225.623 kb on - strand, within PGA1_c21470at 2225.713 kb on - strand, within PGA1_c21470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
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2,224,270 - +2.9
2,224,272 + -1.7
2,224,280 - -2.4
2,224,464 + PGA1_c21460 0.38 +2.5
2,224,578 + PGA1_c21460 0.63 +1.2
2,224,591 - PGA1_c21460 0.66 -0.2
2,224,593 + PGA1_c21460 0.67 +2.3
2,224,596 - PGA1_c21460 0.68 +0.2
2,224,603 + PGA1_c21460 0.69 -1.3
2,224,611 - PGA1_c21460 0.71 -1.0
2,224,616 + PGA1_c21460 0.72 -1.3
2,224,624 - PGA1_c21460 0.74 +2.2
2,224,696 + +3.5
2,224,711 - -1.7
2,224,741 - -0.2
2,224,748 - +0.5
2,224,748 - +2.1
2,224,748 - +1.6
2,224,772 - +0.6
2,224,814 + +1.3
2,224,814 + +2.1
2,224,817 - +2.2
2,224,855 - +2.5
2,224,875 - -1.4
2,224,886 - -1.4
2,224,967 - +3.1
2,224,975 - PGA1_c21470 0.10 -3.2
2,225,012 + PGA1_c21470 0.14 -0.1
2,225,012 + PGA1_c21470 0.14 -2.1
2,225,020 - PGA1_c21470 0.15 +2.5
2,225,020 - PGA1_c21470 0.15 +0.4
2,225,020 - PGA1_c21470 0.15 -0.4
2,225,094 - PGA1_c21470 0.22 +2.5
2,225,122 - PGA1_c21470 0.25 -0.8
2,225,129 - PGA1_c21470 0.26 -2.7
2,225,198 + PGA1_c21470 0.32 +2.5
2,225,199 + PGA1_c21470 0.33 -0.3
2,225,199 + PGA1_c21470 0.33 +1.7
2,225,212 - PGA1_c21470 0.34 +0.6
2,225,212 - PGA1_c21470 0.34 -2.3
2,225,227 + PGA1_c21470 0.35 +1.9
2,225,240 + PGA1_c21470 0.37 -2.5
2,225,249 - PGA1_c21470 0.38 -0.7
2,225,262 - PGA1_c21470 0.39 -0.7
2,225,615 + PGA1_c21470 0.74 -0.0
2,225,623 - PGA1_c21470 0.75 -2.2
2,225,713 - PGA1_c21470 0.84 +2.5

Or see this region's nucleotide sequence