Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c19040

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c19030 and PGA1_c19040 overlap by 4 nucleotidesPGA1_c19040 and PGA1_c19050 are separated by 90 nucleotidesPGA1_c19050 and PGA1_c19060 are separated by 47 nucleotides PGA1_c19030: PGA1_c19030 - putative efflux transporter, RND family, MFP subunit, at 1,973,763 to 1,975,055 _c19030 PGA1_c19040: PGA1_c19040 - multidrug resistance protein MdtC, at 1,975,052 to 1,978,858 _c19040 PGA1_c19050: PGA1_c19050 - hypothetical protein, at 1,978,949 to 1,979,176 _c19050 PGA1_c19060: PGA1_c19060 - ABC transporter, ATP-binding protein, at 1,979,224 to 1,981,032 _c19060 Position (kb) 1975 1976 1977 1978 1979Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1974.071 kb on + strand, within PGA1_c19030at 1974.097 kb on + strand, within PGA1_c19030at 1974.102 kb on - strand, within PGA1_c19030at 1974.115 kb on - strand, within PGA1_c19030at 1974.127 kb on - strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.134 kb on + strand, within PGA1_c19030at 1974.142 kb on - strand, within PGA1_c19030at 1974.142 kb on - strand, within PGA1_c19030at 1974.181 kb on + strand, within PGA1_c19030at 1974.197 kb on + strand, within PGA1_c19030at 1974.272 kb on + strand, within PGA1_c19030at 1974.272 kb on + strand, within PGA1_c19030at 1974.280 kb on - strand, within PGA1_c19030at 1974.355 kb on - strand, within PGA1_c19030at 1974.378 kb on - strand, within PGA1_c19030at 1974.404 kb on - strand, within PGA1_c19030at 1974.546 kb on - strand, within PGA1_c19030at 1974.660 kb on - strand, within PGA1_c19030at 1974.678 kb on + strand, within PGA1_c19030at 1974.709 kb on + strand, within PGA1_c19030at 1974.714 kb on + strand, within PGA1_c19030at 1974.851 kb on - strand, within PGA1_c19030at 1974.899 kb on - strand, within PGA1_c19030at 1975.016 kb on + strandat 1975.024 kb on - strandat 1975.026 kb on - strandat 1975.033 kb on + strandat 1975.041 kb on - strandat 1975.062 kb on - strandat 1975.121 kb on - strandat 1975.197 kb on - strandat 1975.226 kb on - strandat 1975.243 kb on + strandat 1975.251 kb on - strandat 1975.251 kb on - strandat 1975.359 kb on - strandat 1975.419 kb on - strandat 1975.483 kb on + strand, within PGA1_c19040at 1975.483 kb on + strand, within PGA1_c19040at 1975.491 kb on - strand, within PGA1_c19040at 1975.496 kb on - strand, within PGA1_c19040at 1975.511 kb on - strand, within PGA1_c19040at 1975.534 kb on - strand, within PGA1_c19040at 1975.609 kb on + strand, within PGA1_c19040at 1975.639 kb on + strand, within PGA1_c19040at 1975.640 kb on - strand, within PGA1_c19040at 1975.655 kb on - strand, within PGA1_c19040at 1975.662 kb on + strand, within PGA1_c19040at 1975.667 kb on + strand, within PGA1_c19040at 1975.670 kb on - strand, within PGA1_c19040at 1975.675 kb on - strand, within PGA1_c19040at 1975.703 kb on + strand, within PGA1_c19040at 1975.739 kb on + strand, within PGA1_c19040at 1975.746 kb on + strand, within PGA1_c19040at 1975.754 kb on - strand, within PGA1_c19040at 1975.754 kb on - strand, within PGA1_c19040at 1975.754 kb on - strand, within PGA1_c19040at 1975.835 kb on - strand, within PGA1_c19040at 1975.884 kb on + strand, within PGA1_c19040at 1975.940 kb on - strand, within PGA1_c19040at 1975.940 kb on - strand, within PGA1_c19040at 1976.077 kb on - strand, within PGA1_c19040at 1976.089 kb on + strand, within PGA1_c19040at 1976.129 kb on + strand, within PGA1_c19040at 1976.137 kb on - strand, within PGA1_c19040at 1976.172 kb on + strand, within PGA1_c19040at 1976.172 kb on + strand, within PGA1_c19040at 1976.216 kb on + strand, within PGA1_c19040at 1976.251 kb on + strand, within PGA1_c19040at 1976.310 kb on - strand, within PGA1_c19040at 1976.323 kb on - strand, within PGA1_c19040at 1976.412 kb on - strand, within PGA1_c19040at 1976.417 kb on - strand, within PGA1_c19040at 1976.491 kb on + strand, within PGA1_c19040at 1976.636 kb on + strand, within PGA1_c19040at 1976.680 kb on - strand, within PGA1_c19040at 1976.807 kb on + strand, within PGA1_c19040at 1976.863 kb on + strand, within PGA1_c19040at 1976.896 kb on + strand, within PGA1_c19040at 1976.933 kb on - strand, within PGA1_c19040at 1976.954 kb on + strand, within PGA1_c19040at 1976.962 kb on - strand, within PGA1_c19040at 1977.034 kb on + strand, within PGA1_c19040at 1977.042 kb on - strand, within PGA1_c19040at 1977.080 kb on + strand, within PGA1_c19040at 1977.080 kb on + strand, within PGA1_c19040at 1977.124 kb on + strand, within PGA1_c19040at 1977.174 kb on + strand, within PGA1_c19040at 1977.174 kb on + strand, within PGA1_c19040at 1977.262 kb on + strand, within PGA1_c19040at 1977.270 kb on - strand, within PGA1_c19040at 1977.270 kb on - strand, within PGA1_c19040at 1977.307 kb on - strand, within PGA1_c19040at 1977.324 kb on + strand, within PGA1_c19040at 1977.355 kb on + strand, within PGA1_c19040at 1977.395 kb on - strand, within PGA1_c19040at 1977.431 kb on - strand, within PGA1_c19040at 1977.431 kb on - strand, within PGA1_c19040at 1977.437 kb on - strand, within PGA1_c19040at 1977.739 kb on + strand, within PGA1_c19040at 1977.747 kb on - strand, within PGA1_c19040at 1977.747 kb on - strand, within PGA1_c19040at 1977.798 kb on + strand, within PGA1_c19040at 1977.888 kb on + strand, within PGA1_c19040at 1977.898 kb on + strand, within PGA1_c19040at 1978.177 kb on + strand, within PGA1_c19040at 1978.185 kb on - strand, within PGA1_c19040at 1978.185 kb on - strand, within PGA1_c19040at 1978.233 kb on - strand, within PGA1_c19040at 1978.317 kb on - strand, within PGA1_c19040at 1978.380 kb on + strand, within PGA1_c19040at 1978.526 kb on - strandat 1978.597 kb on + strandat 1978.649 kb on - strandat 1978.782 kb on - strandat 1978.934 kb on - strandat 1978.934 kb on - strandat 1978.939 kb on + strandat 1979.017 kb on - strand, within PGA1_c19050at 1979.054 kb on + strand, within PGA1_c19050at 1979.069 kb on + strand, within PGA1_c19050at 1979.069 kb on + strand, within PGA1_c19050at 1979.078 kb on + strand, within PGA1_c19050at 1979.186 kb on + strandat 1979.192 kb on - strandat 1979.192 kb on - strandat 1979.236 kb on - strandat 1979.295 kb on + strandat 1979.349 kb on - strandat 1979.383 kb on + strandat 1979.398 kb on + strandat 1979.406 kb on - strand, within PGA1_c19060at 1979.406 kb on - strand, within PGA1_c19060at 1979.511 kb on - strand, within PGA1_c19060at 1979.534 kb on + strand, within PGA1_c19060at 1979.578 kb on - strand, within PGA1_c19060at 1979.651 kb on + strand, within PGA1_c19060at 1979.651 kb on + strand, within PGA1_c19060at 1979.659 kb on - strand, within PGA1_c19060at 1979.659 kb on - strand, within PGA1_c19060at 1979.710 kb on + strand, within PGA1_c19060at 1979.853 kb on + strand, within PGA1_c19060

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml
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1,974,071 + PGA1_c19030 0.24 +2.4
1,974,097 + PGA1_c19030 0.26 +1.1
1,974,102 - PGA1_c19030 0.26 -2.6
1,974,115 - PGA1_c19030 0.27 +0.6
1,974,127 - PGA1_c19030 0.28 -0.8
1,974,134 + PGA1_c19030 0.29 +0.1
1,974,134 + PGA1_c19030 0.29 -1.0
1,974,134 + PGA1_c19030 0.29 +2.0
1,974,134 + PGA1_c19030 0.29 -2.4
1,974,134 + PGA1_c19030 0.29 +2.4
1,974,142 - PGA1_c19030 0.29 +3.3
1,974,142 - PGA1_c19030 0.29 +1.3
1,974,181 + PGA1_c19030 0.32 -1.1
1,974,197 + PGA1_c19030 0.34 +2.8
1,974,272 + PGA1_c19030 0.39 +2.0
1,974,272 + PGA1_c19030 0.39 -1.7
1,974,280 - PGA1_c19030 0.40 +1.1
1,974,355 - PGA1_c19030 0.46 -0.6
1,974,378 - PGA1_c19030 0.48 +4.5
1,974,404 - PGA1_c19030 0.50 +1.5
1,974,546 - PGA1_c19030 0.61 +0.9
1,974,660 - PGA1_c19030 0.69 +2.5
1,974,678 + PGA1_c19030 0.71 +1.7
1,974,709 + PGA1_c19030 0.73 +1.6
1,974,714 + PGA1_c19030 0.74 -1.9
1,974,851 - PGA1_c19030 0.84 -1.1
1,974,899 - PGA1_c19030 0.88 +2.1
1,975,016 + +2.1
1,975,024 - +0.6
1,975,026 - +1.3
1,975,033 + +2.9
1,975,041 - +2.1
1,975,062 - +2.6
1,975,121 - +2.3
1,975,197 - -0.5
1,975,226 - +1.1
1,975,243 + +2.7
1,975,251 - +0.9
1,975,251 - +1.6
1,975,359 - +1.2
1,975,419 - +2.6
1,975,483 + PGA1_c19040 0.11 +1.1
1,975,483 + PGA1_c19040 0.11 +0.6
1,975,491 - PGA1_c19040 0.12 +1.2
1,975,496 - PGA1_c19040 0.12 +1.9
1,975,511 - PGA1_c19040 0.12 +1.6
1,975,534 - PGA1_c19040 0.13 +0.6
1,975,609 + PGA1_c19040 0.15 -1.6
1,975,639 + PGA1_c19040 0.15 +2.1
1,975,640 - PGA1_c19040 0.15 -2.3
1,975,655 - PGA1_c19040 0.16 +0.8
1,975,662 + PGA1_c19040 0.16 -0.1
1,975,667 + PGA1_c19040 0.16 +3.1
1,975,670 - PGA1_c19040 0.16 +1.9
1,975,675 - PGA1_c19040 0.16 +0.3
1,975,703 + PGA1_c19040 0.17 +3.8
1,975,739 + PGA1_c19040 0.18 -0.5
1,975,746 + PGA1_c19040 0.18 -1.4
1,975,754 - PGA1_c19040 0.18 +2.9
1,975,754 - PGA1_c19040 0.18 -0.1
1,975,754 - PGA1_c19040 0.18 +0.5
1,975,835 - PGA1_c19040 0.21 +1.4
1,975,884 + PGA1_c19040 0.22 +2.2
1,975,940 - PGA1_c19040 0.23 +2.8
1,975,940 - PGA1_c19040 0.23 +1.8
1,976,077 - PGA1_c19040 0.27 +0.5
1,976,089 + PGA1_c19040 0.27 -1.3
1,976,129 + PGA1_c19040 0.28 -2.0
1,976,137 - PGA1_c19040 0.29 +3.3
1,976,172 + PGA1_c19040 0.29 -1.5
1,976,172 + PGA1_c19040 0.29 +1.3
1,976,216 + PGA1_c19040 0.31 +1.8
1,976,251 + PGA1_c19040 0.31 +2.0
1,976,310 - PGA1_c19040 0.33 +4.4
1,976,323 - PGA1_c19040 0.33 +0.7
1,976,412 - PGA1_c19040 0.36 +2.8
1,976,417 - PGA1_c19040 0.36 +2.3
1,976,491 + PGA1_c19040 0.38 +3.8
1,976,636 + PGA1_c19040 0.42 +3.1
1,976,680 - PGA1_c19040 0.43 +2.1
1,976,807 + PGA1_c19040 0.46 -1.7
1,976,863 + PGA1_c19040 0.48 +2.3
1,976,896 + PGA1_c19040 0.48 +2.0
1,976,933 - PGA1_c19040 0.49 +1.9
1,976,954 + PGA1_c19040 0.50 +2.2
1,976,962 - PGA1_c19040 0.50 +3.2
1,977,034 + PGA1_c19040 0.52 +2.6
1,977,042 - PGA1_c19040 0.52 -0.4
1,977,080 + PGA1_c19040 0.53 -0.9
1,977,080 + PGA1_c19040 0.53 +1.7
1,977,124 + PGA1_c19040 0.54 +2.0
1,977,174 + PGA1_c19040 0.56 +2.5
1,977,174 + PGA1_c19040 0.56 +3.0
1,977,262 + PGA1_c19040 0.58 -0.2
1,977,270 - PGA1_c19040 0.58 +1.4
1,977,270 - PGA1_c19040 0.58 +0.7
1,977,307 - PGA1_c19040 0.59 -1.5
1,977,324 + PGA1_c19040 0.60 +2.4
1,977,355 + PGA1_c19040 0.60 +1.6
1,977,395 - PGA1_c19040 0.62 -0.5
1,977,431 - PGA1_c19040 0.62 -0.1
1,977,431 - PGA1_c19040 0.62 +1.1
1,977,437 - PGA1_c19040 0.63 -1.3
1,977,739 + PGA1_c19040 0.71 +1.3
1,977,747 - PGA1_c19040 0.71 -0.8
1,977,747 - PGA1_c19040 0.71 -1.3
1,977,798 + PGA1_c19040 0.72 +1.9
1,977,888 + PGA1_c19040 0.74 +3.0
1,977,898 + PGA1_c19040 0.75 +0.3
1,978,177 + PGA1_c19040 0.82 +2.1
1,978,185 - PGA1_c19040 0.82 +1.9
1,978,185 - PGA1_c19040 0.82 +1.3
1,978,233 - PGA1_c19040 0.84 -2.5
1,978,317 - PGA1_c19040 0.86 -1.2
1,978,380 + PGA1_c19040 0.87 +2.3
1,978,526 - +2.6
1,978,597 + -2.3
1,978,649 - +0.0
1,978,782 - -3.5
1,978,934 - +0.0
1,978,934 - +2.5
1,978,939 + +1.9
1,979,017 - PGA1_c19050 0.30 +1.8
1,979,054 + PGA1_c19050 0.46 +3.4
1,979,069 + PGA1_c19050 0.53 +1.5
1,979,069 + PGA1_c19050 0.53 +0.5
1,979,078 + PGA1_c19050 0.57 -2.5
1,979,186 + +0.4
1,979,192 - +2.6
1,979,192 - +1.1
1,979,236 - -0.4
1,979,295 + -0.5
1,979,349 - -2.8
1,979,383 + +1.3
1,979,398 + -1.0
1,979,406 - PGA1_c19060 0.10 +0.6
1,979,406 - PGA1_c19060 0.10 +1.8
1,979,511 - PGA1_c19060 0.16 +2.6
1,979,534 + PGA1_c19060 0.17 -0.8
1,979,578 - PGA1_c19060 0.20 +2.5
1,979,651 + PGA1_c19060 0.24 +1.2
1,979,651 + PGA1_c19060 0.24 -1.2
1,979,659 - PGA1_c19060 0.24 -1.9
1,979,659 - PGA1_c19060 0.24 -1.0
1,979,710 + PGA1_c19060 0.27 -0.5
1,979,853 + PGA1_c19060 0.35 +2.1

Or see this region's nucleotide sequence