Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c18680

Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Polymyxin B sulfate 0.0032 mg/ml
1,937,367	+		PGA1_c18650	0.42	-2.3
1,937,429	+		PGA1_c18650	0.60	+2.4
1,937,429	+		PGA1_c18650	0.60	-1.4
1,937,429	+		PGA1_c18650	0.60	-0.6
1,937,429	+		PGA1_c18650	0.60	+3.1
1,937,430	-		PGA1_c18650	0.60	-1.0
1,937,431	+		PGA1_c18650	0.61	-1.3
1,937,437	-		PGA1_c18650	0.62	+1.7
1,937,446	+		PGA1_c18650	0.65	-2.5
1,937,605	+				+2.5
1,937,615	+		PGA1_c18660	0.11	+1.7
1,937,637	+		PGA1_c18660	0.19	-1.2
1,937,687	+		PGA1_c18660	0.36	-1.1
1,937,691	+		PGA1_c18660	0.37	+3.5
1,937,693	+		PGA1_c18660	0.38	+3.0
1,937,699	-		PGA1_c18660	0.40	+1.5
1,937,701	+		PGA1_c18660	0.41	-1.5
1,937,770	+		PGA1_c18660	0.64	-0.2
1,937,784	+		PGA1_c18660	0.69	+3.0
1,937,803	+		PGA1_c18660	0.76	+2.4
1,937,803	+		PGA1_c18660	0.76	+0.2
1,937,840	+		PGA1_c18660	0.88	+1.4
1,937,901	+				+1.1
1,937,901	+				+3.2
1,937,930	-				-2.6
1,938,116	+				-0.9
1,938,167	-				-3.2
1,938,167	-				-1.5
1,938,167	-				+2.3
1,938,168	+				-1.1
1,938,201	-				-1.7
1,938,238	-				-0.5
1,938,240	+				+1.9
1,938,252	+				+0.5
1,938,260	-				-2.1
1,938,260	-				-1.7
1,938,318	+				+1.0
1,938,340	-				-2.9
1,938,398	-				+3.8
1,938,479	+		PGA1_c18680	0.13	+2.4
1,938,479	+		PGA1_c18680	0.13	+2.3
1,938,505	+		PGA1_c18680	0.16	+1.0
1,938,505	+		PGA1_c18680	0.16	+2.1
1,938,513	-		PGA1_c18680	0.16	+1.7
1,938,559	-		PGA1_c18680	0.21	-1.1
1,938,561	+		PGA1_c18680	0.21	+1.6
1,938,580	+		PGA1_c18680	0.23	-1.5
1,938,581	+		PGA1_c18680	0.23	-1.2
1,938,581	+		PGA1_c18680	0.23	-0.6
1,938,589	-		PGA1_c18680	0.24	+1.7
1,938,589	-		PGA1_c18680	0.24	+0.5
1,938,610	+		PGA1_c18680	0.26	-0.7
1,938,610	+		PGA1_c18680	0.26	+3.7
1,938,610	+		PGA1_c18680	0.26	-1.5
1,938,618	-		PGA1_c18680	0.27	+0.0
1,938,618	-		PGA1_c18680	0.27	-1.8
1,938,618	-		PGA1_c18680	0.27	-2.2
1,938,645	-		PGA1_c18680	0.30	+1.0
1,938,679	-		PGA1_c18680	0.33	+1.3
1,938,679	-		PGA1_c18680	0.33	+1.2
1,938,679	-		PGA1_c18680	0.33	-0.1
1,938,706	+		PGA1_c18680	0.36	-3.4
1,938,714	-		PGA1_c18680	0.37	-2.3
1,938,717	+		PGA1_c18680	0.37	+3.4
1,938,757	+		PGA1_c18680	0.41	-1.4
1,938,772	+		PGA1_c18680	0.42	-1.8
1,938,781	-		PGA1_c18680	0.43	-1.2
1,938,781	-		PGA1_c18680	0.43	-1.0
1,938,806	+		PGA1_c18680	0.46	-2.1
1,938,814	-		PGA1_c18680	0.47	-1.5
1,938,821	+		PGA1_c18680	0.47	-2.5
1,938,827	+		PGA1_c18680	0.48	+0.2
1,938,827	+		PGA1_c18680	0.48	-3.1
1,938,853	+		PGA1_c18680	0.50	-2.1
1,938,860	+		PGA1_c18680	0.51	+0.1
1,938,914	+		PGA1_c18680	0.56	+1.8
1,938,922	-		PGA1_c18680	0.57	+1.7
1,938,985	-		PGA1_c18680	0.64	-1.8
1,938,985	-		PGA1_c18680	0.64	+2.2
1,938,985	-		PGA1_c18680	0.64	+2.8
1,939,013	+		PGA1_c18680	0.66	-1.6
1,939,013	+		PGA1_c18680	0.66	+1.4
1,939,021	-		PGA1_c18680	0.67	-2.5
1,939,021	-		PGA1_c18680	0.67	-1.0
1,939,021	-		PGA1_c18680	0.67	-2.3
1,939,021	-		PGA1_c18680	0.67	-1.1
1,939,021	-		PGA1_c18680	0.67	-1.1
1,939,021	-		PGA1_c18680	0.67	+0.3
1,939,021	-		PGA1_c18680	0.67	-0.6
1,939,047	+		PGA1_c18680	0.70	-0.6
1,939,059	+		PGA1_c18680	0.71	-2.8
1,939,095	+		PGA1_c18680	0.75	-1.4
1,939,097	+		PGA1_c18680	0.75	-2.2
1,939,097	+				+0.0
1,939,097	+		PGA1_c18680	0.75	+2.1
1,939,097	+		PGA1_c18680	0.75	+3.1
1,939,105	-		PGA1_c18680	0.76	-1.4
1,939,105	-		PGA1_c18680	0.76	-1.7
1,939,105	-		PGA1_c18680	0.76	-2.7
1,939,105	-		PGA1_c18680	0.76	-1.0
1,939,120	+		PGA1_c18680	0.77	-1.1
1,939,122	+		PGA1_c18680	0.77	-1.4
1,939,122	+		PGA1_c18680	0.77	-0.5
1,939,184	-		PGA1_c18680	0.83	+1.2
1,939,187	+		PGA1_c18680	0.84	+0.9
1,939,331	-				-1.5
1,939,340	-				+2.3
1,939,340	-				-2.3
1,939,626	+				-1.9
1,939,634	-				-2.1
1,939,661	-				-1.9
1,939,663	+				-0.8
1,939,671	-				-1.7
1,939,671	-				-2.0
1,939,674	-				+1.4
1,939,707	+				+0.2
1,939,881	+		PGA1_c18700	0.14	+2.0
1,939,912	+		PGA1_c18700	0.16	-0.9
1,939,919	+		PGA1_c18700	0.16	-0.3
1,939,920	-		PGA1_c18700	0.16	+0.6
1,940,119	-		PGA1_c18700	0.28	+0.0
1,940,170	+		PGA1_c18700	0.31	+2.1
1,940,176	+		PGA1_c18700	0.31	-0.8
1,940,185	-		PGA1_c18700	0.32	+1.5
1,940,188	+		PGA1_c18700	0.32	-1.9
1,940,251	-		PGA1_c18700	0.36	+0.6
1,940,253	-		PGA1_c18700	0.36	+2.3
1,940,260	+		PGA1_c18700	0.36	-1.7
1,940,268	-		PGA1_c18700	0.37	+0.5