Experiment: m.b. Polymyxin B sulfate 0.0032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14260 and PGA1_c14270 are separated by 119 nucleotides PGA1_c14270 and PGA1_c14280 are separated by 3 nucleotides PGA1_c14280 and PGA1_c14290 are separated by 5 nucleotides PGA1_c14290 and PGA1_c14300 are separated by 124 nucleotides
PGA1_c14260: PGA1_c14260 - peptidase M50, at 1,480,403 to 1,481,752
_c14260
PGA1_c14270: PGA1_c14270 - hypothetical protein, at 1,481,872 to 1,482,195
_c14270
PGA1_c14280: PGA1_c14280 - outer membrane protein Omp, at 1,482,199 to 1,484,595
_c14280
PGA1_c14290: PGA1_c14290 - putative outer membrane protein, at 1,484,601 to 1,485,251
_c14290
PGA1_c14300: PGA1_c14300 - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase FabZ, at 1,485,376 to 1,485,840
_c14300
Position (kb)
1482
1483
1484
1485 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1481.237 kb on + strand, within PGA1_c14260 at 1481.401 kb on + strand, within PGA1_c14260 at 1481.401 kb on + strand, within PGA1_c14260 at 1481.401 kb on + strand, within PGA1_c14260 at 1481.401 kb on + strand, within PGA1_c14260 at 1481.646 kb on + strand at 1481.771 kb on + strand at 1481.779 kb on - strand at 1481.779 kb on - strand at 1481.786 kb on + strand at 1481.786 kb on + strand at 1481.786 kb on + strand at 1481.786 kb on + strand at 1481.786 kb on + strand at 1481.794 kb on - strand at 1481.794 kb on - strand at 1481.874 kb on + strand at 1481.938 kb on + strand, within PGA1_c14270 at 1481.945 kb on + strand, within PGA1_c14270 at 1481.947 kb on + strand, within PGA1_c14270 at 1481.948 kb on - strand, within PGA1_c14270 at 1482.018 kb on - strand, within PGA1_c14270 at 1485.230 kb on + strand at 1485.238 kb on - strand at 1485.285 kb on + strand at 1485.293 kb on - strand at 1485.295 kb on + strand at 1485.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0032 mg/ml remove 1,481,237 + PGA1_c14260 0.62 -0.8 1,481,401 + PGA1_c14260 0.74 -0.2 1,481,401 + PGA1_c14260 0.74 -0.5 1,481,401 + PGA1_c14260 0.74 -0.3 1,481,401 + PGA1_c14260 0.74 -0.8 1,481,646 + -1.3 1,481,771 + +1.5 1,481,779 - -0.5 1,481,779 - -0.6 1,481,786 + -1.3 1,481,786 + -1.9 1,481,786 + +1.5 1,481,786 + +0.7 1,481,786 + +2.6 1,481,794 - -1.4 1,481,794 - -1.8 1,481,874 + -1.6 1,481,938 + PGA1_c14270 0.20 -2.2 1,481,945 + PGA1_c14270 0.23 +2.0 1,481,947 + PGA1_c14270 0.23 +2.3 1,481,948 - PGA1_c14270 0.23 -1.7 1,482,018 - PGA1_c14270 0.45 +1.9 1,485,230 + -2.2 1,485,238 - -0.1 1,485,285 + +2.5 1,485,293 - -0.5 1,485,295 + +1.6 1,485,313 - -0.8
Or see this region's nucleotide sequence