Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1802

Experiment: Pyruvate-Sulfite (60-20 mM) minimal

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1801 and DVU1802 are separated by 209 nucleotidesDVU1802 and DVU1803 are separated by 30 nucleotides DVU1801: DVU1801 - hypothetical protein (TIGR), at 1,863,082 to 1,864,269 DVU1801 DVU1802: DVU1802 - conserved hypothetical protein (TIGR), at 1,864,479 to 1,865,339 DVU1802 DVU1803: DVU1803 - glycosyl transferase, group 1 family protein (TIGR), at 1,865,370 to 1,866,458 DVU1803 Position (kb) 1864 1865 1866Strain fitness (log2 ratio) -1 0 1 2 3at 1863.526 kb on - strand, within DVU1801at 1863.535 kb on - strand, within DVU1801at 1863.564 kb on + strand, within DVU1801at 1863.672 kb on - strand, within DVU1801at 1863.863 kb on - strand, within DVU1801at 1863.873 kb on + strand, within DVU1801at 1863.880 kb on + strand, within DVU1801at 1863.904 kb on - strand, within DVU1801at 1863.976 kb on + strand, within DVU1801at 1864.056 kb on - strand, within DVU1801at 1864.125 kb on - strand, within DVU1801at 1864.142 kb on - strand, within DVU1801at 1864.142 kb on - strand, within DVU1801at 1864.174 kb on - strandat 1864.247 kb on + strandat 1864.311 kb on + strandat 1864.311 kb on - strandat 1864.333 kb on - strandat 1864.427 kb on - strandat 1864.738 kb on + strand, within DVU1802at 1864.827 kb on + strand, within DVU1802at 1864.927 kb on - strand, within DVU1802at 1864.962 kb on + strand, within DVU1802at 1864.962 kb on + strand, within DVU1802at 1864.970 kb on - strand, within DVU1802at 1864.988 kb on + strand, within DVU1802at 1865.027 kb on + strand, within DVU1802at 1865.027 kb on + strand, within DVU1802at 1865.035 kb on - strand, within DVU1802at 1865.045 kb on - strand, within DVU1802at 1865.072 kb on - strand, within DVU1802at 1865.093 kb on + strand, within DVU1802at 1865.108 kb on + strand, within DVU1802at 1865.108 kb on + strand, within DVU1802at 1865.150 kb on - strand, within DVU1802at 1865.177 kb on + strand, within DVU1802at 1865.219 kb on + strand, within DVU1802at 1865.227 kb on - strand, within DVU1802at 1865.232 kb on + strand, within DVU1802at 1865.277 kb on - strandat 1865.348 kb on + strandat 1865.356 kb on - strandat 1865.374 kb on + strandat 1865.406 kb on + strandat 1865.406 kb on + strandat 1865.414 kb on - strandat 1865.414 kb on - strandat 1865.460 kb on - strandat 1865.516 kb on - strand, within DVU1803at 1865.722 kb on - strand, within DVU1803at 1865.727 kb on - strand, within DVU1803at 1865.775 kb on - strand, within DVU1803at 1865.961 kb on + strand, within DVU1803at 1865.971 kb on + strand, within DVU1803at 1865.971 kb on + strand, within DVU1803at 1865.971 kb on + strand, within DVU1803at 1865.971 kb on + strand, within DVU1803at 1865.984 kb on - strand, within DVU1803at 1866.118 kb on + strand, within DVU1803at 1866.166 kb on + strand, within DVU1803at 1866.201 kb on - strand, within DVU1803at 1866.226 kb on + strand, within DVU1803at 1866.309 kb on - strand, within DVU1803

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20 mM) minimal
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1,863,526 - DVU1801 0.37 -1.2
1,863,535 - DVU1801 0.38 -1.3
1,863,564 + DVU1801 0.41 +0.1
1,863,672 - DVU1801 0.50 -0.6
1,863,863 - DVU1801 0.66 -0.0
1,863,873 + DVU1801 0.67 -1.1
1,863,880 + DVU1801 0.67 -1.0
1,863,904 - DVU1801 0.69 -0.9
1,863,976 + DVU1801 0.75 -0.4
1,864,056 - DVU1801 0.82 -0.1
1,864,125 - DVU1801 0.88 -1.1
1,864,142 - DVU1801 0.89 +3.7
1,864,142 - DVU1801 0.89 +1.1
1,864,174 - +0.4
1,864,247 + -0.8
1,864,311 + +1.7
1,864,311 - -1.2
1,864,333 - -0.6
1,864,427 - -0.8
1,864,738 + DVU1802 0.30 -0.4
1,864,827 + DVU1802 0.40 -0.1
1,864,927 - DVU1802 0.52 -1.4
1,864,962 + DVU1802 0.56 +1.3
1,864,962 + DVU1802 0.56 -0.3
1,864,970 - DVU1802 0.57 -0.3
1,864,988 + DVU1802 0.59 -0.8
1,865,027 + DVU1802 0.64 -1.6
1,865,027 + DVU1802 0.64 -0.6
1,865,035 - DVU1802 0.65 -1.4
1,865,045 - DVU1802 0.66 -1.6
1,865,072 - DVU1802 0.69 -0.6
1,865,093 + DVU1802 0.71 -0.5
1,865,108 + DVU1802 0.73 -0.6
1,865,108 + DVU1802 0.73 +0.1
1,865,150 - DVU1802 0.78 +0.0
1,865,177 + DVU1802 0.81 -1.3
1,865,219 + DVU1802 0.86 -1.1
1,865,227 - DVU1802 0.87 +0.2
1,865,232 + DVU1802 0.87 -0.1
1,865,277 - -0.1
1,865,348 + -1.1
1,865,356 - -0.5
1,865,374 + +0.1
1,865,406 + -0.3
1,865,406 + -0.7
1,865,414 - +0.2
1,865,414 - -0.7
1,865,460 - -0.4
1,865,516 - DVU1803 0.13 +0.4
1,865,722 - DVU1803 0.32 -0.2
1,865,727 - DVU1803 0.33 -0.9
1,865,775 - DVU1803 0.37 +0.2
1,865,961 + DVU1803 0.54 -0.1
1,865,971 + DVU1803 0.55 +1.7
1,865,971 + DVU1803 0.55 +0.0
1,865,971 + DVU1803 0.55 +0.1
1,865,971 + DVU1803 0.55 -0.2
1,865,984 - DVU1803 0.56 -1.2
1,866,118 + DVU1803 0.69 -0.8
1,866,166 + DVU1803 0.73 +1.1
1,866,201 - DVU1803 0.76 +0.0
1,866,226 + DVU1803 0.79 +1.2
1,866,309 - DVU1803 0.86 +0.0

Or see this region's nucleotide sequence