Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4833.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4832.1 and Xcc-8004.4833.1 overlap by 4 nucleotidesXcc-8004.4833.1 and Xcc-8004.4834.1 are separated by 88 nucleotides Xcc-8004.4832.1: Xcc-8004.4832.1 - DNA primase (EC 2.7.7.-), at 4,596,831 to 4,598,579 Xcc-8004.4832.1 Xcc-8004.4833.1: Xcc-8004.4833.1 - FIG01111678: hypothetical protein, at 4,598,576 to 4,599,076 Xcc-8004.4833.1 Xcc-8004.4834.1: Xcc-8004.4834.1 - Sodium - Bile acid symporter, at 4,599,165 to 4,600,157 Xcc-8004.4834.1 Position (kb) 4598 4599 4600Strain fitness (log2 ratio) -1 0 1 2at 4598.586 kb on + strandat 4598.813 kb on + strand, within Xcc-8004.4833.1at 4598.813 kb on + strand, within Xcc-8004.4833.1at 4598.814 kb on - strand, within Xcc-8004.4833.1at 4599.119 kb on + strandat 4599.119 kb on + strandat 4599.119 kb on + strandat 4599.119 kb on + strandat 4599.119 kb on + strandat 4599.120 kb on - strandat 4599.120 kb on - strandat 4599.468 kb on + strand, within Xcc-8004.4834.1at 4599.468 kb on + strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.469 kb on - strand, within Xcc-8004.4834.1at 4599.562 kb on + strand, within Xcc-8004.4834.1at 4599.633 kb on - strand, within Xcc-8004.4834.1at 4599.768 kb on + strand, within Xcc-8004.4834.1at 4599.768 kb on + strand, within Xcc-8004.4834.1at 4599.768 kb on + strand, within Xcc-8004.4834.1at 4599.801 kb on + strand, within Xcc-8004.4834.1at 4599.801 kb on + strand, within Xcc-8004.4834.1at 4599.801 kb on + strand, within Xcc-8004.4834.1at 4599.802 kb on - strand, within Xcc-8004.4834.1at 4599.802 kb on - strand, within Xcc-8004.4834.1at 4599.871 kb on + strand, within Xcc-8004.4834.1at 4600.007 kb on - strand, within Xcc-8004.4834.1at 4600.071 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,598,586 + -0.1
4,598,813 + Xcc-8004.4833.1 0.47 +0.4
4,598,813 + Xcc-8004.4833.1 0.47 +1.2
4,598,814 - Xcc-8004.4833.1 0.48 -0.3
4,599,119 + -0.4
4,599,119 + -1.2
4,599,119 + +0.3
4,599,119 + +0.3
4,599,119 + +1.0
4,599,120 - -1.1
4,599,120 - -0.2
4,599,468 + Xcc-8004.4834.1 0.31 +0.3
4,599,468 + Xcc-8004.4834.1 0.31 -0.2
4,599,469 - Xcc-8004.4834.1 0.31 -0.1
4,599,469 - Xcc-8004.4834.1 0.31 -0.4
4,599,469 - Xcc-8004.4834.1 0.31 -0.3
4,599,469 - Xcc-8004.4834.1 0.31 +1.8
4,599,469 - Xcc-8004.4834.1 0.31 +0.0
4,599,562 + Xcc-8004.4834.1 0.40 -0.3
4,599,633 - Xcc-8004.4834.1 0.47 -0.3
4,599,768 + Xcc-8004.4834.1 0.61 +0.4
4,599,768 + Xcc-8004.4834.1 0.61 -0.7
4,599,768 + Xcc-8004.4834.1 0.61 -1.1
4,599,801 + Xcc-8004.4834.1 0.64 -1.1
4,599,801 + Xcc-8004.4834.1 0.64 +0.9
4,599,801 + Xcc-8004.4834.1 0.64 +0.3
4,599,802 - Xcc-8004.4834.1 0.64 -0.2
4,599,802 - Xcc-8004.4834.1 0.64 -0.8
4,599,871 + Xcc-8004.4834.1 0.71 -0.9
4,600,007 - Xcc-8004.4834.1 0.85 +0.2
4,600,071 + -0.4

Or see this region's nucleotide sequence