Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4756.1 and Xcc-8004.4757.1 are separated by 50 nucleotides Xcc-8004.4757.1 and Xcc-8004.4758.1 are separated by 104 nucleotides Xcc-8004.4758.1 and Xcc-8004.4759.1 are separated by 69 nucleotides
Xcc-8004.4756.1: Xcc-8004.4756.1 - FIG01211576: hypothetical protein, at 4,525,128 to 4,526,486
Xcc-8004.4756.1
Xcc-8004.4757.1: Xcc-8004.4757.1 - Short-chain dehydrogenase/reductase SDR, at 4,526,537 to 4,527,313
Xcc-8004.4757.1
Xcc-8004.4758.1: Xcc-8004.4758.1 - FIG01211401: hypothetical protein, at 4,527,418 to 4,527,633
Xcc-8004.4758.1
Xcc-8004.4759.1: Xcc-8004.4759.1 - protease IV, at 4,527,703 to 4,529,604
Xcc-8004.4759.1
Position (kb) 4526
4527
4528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.822 kb on + strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.823 kb on - strand, within Xcc-8004.4756.1 at 4525.999 kb on + strand, within Xcc-8004.4756.1 at 4525.999 kb on + strand, within Xcc-8004.4756.1 at 4526.000 kb on - strand, within Xcc-8004.4756.1 at 4526.000 kb on - strand, within Xcc-8004.4756.1 at 4526.000 kb on - strand, within Xcc-8004.4756.1 at 4526.047 kb on + strand, within Xcc-8004.4756.1 at 4526.047 kb on + strand, within Xcc-8004.4756.1 at 4526.047 kb on + strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.048 kb on - strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.345 kb on + strand, within Xcc-8004.4756.1 at 4526.346 kb on - strand, within Xcc-8004.4756.1 at 4526.346 kb on - strand, within Xcc-8004.4756.1 at 4526.347 kb on + strand, within Xcc-8004.4756.1 at 4526.348 kb on - strand, within Xcc-8004.4756.1 at 4526.348 kb on - strand, within Xcc-8004.4756.1 at 4526.386 kb on + strand at 4526.538 kb on + strand at 4526.538 kb on + strand at 4527.385 kb on + strand at 4527.385 kb on + strand at 4527.385 kb on + strand at 4527.386 kb on - strand at 4527.438 kb on - strand at 4527.722 kb on + strand at 4527.722 kb on + strand at 4527.723 kb on - strand at 4527.723 kb on - strand at 4527.927 kb on - strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.124 kb on + strand, within Xcc-8004.4759.1 at 4528.125 kb on - strand, within Xcc-8004.4759.1 at 4528.125 kb on - strand, within Xcc-8004.4759.1 at 4528.227 kb on + strand, within Xcc-8004.4759.1 at 4528.228 kb on - strand, within Xcc-8004.4759.1
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,525,822 + Xcc-8004.4756.1 0.51 +1.3 4,525,822 + Xcc-8004.4756.1 0.51 -0.2 4,525,822 + Xcc-8004.4756.1 0.51 +1.8 4,525,822 + Xcc-8004.4756.1 0.51 -0.3 4,525,822 + Xcc-8004.4756.1 0.51 -0.6 4,525,822 + Xcc-8004.4756.1 0.51 -2.5 4,525,823 - Xcc-8004.4756.1 0.51 +0.6 4,525,823 - Xcc-8004.4756.1 0.51 -1.4 4,525,823 - Xcc-8004.4756.1 0.51 +0.5 4,525,823 - Xcc-8004.4756.1 0.51 +0.1 4,525,823 - Xcc-8004.4756.1 0.51 +0.2 4,525,823 - Xcc-8004.4756.1 0.51 +0.1 4,525,999 + Xcc-8004.4756.1 0.64 +0.4 4,525,999 + Xcc-8004.4756.1 0.64 -0.5 4,526,000 - Xcc-8004.4756.1 0.64 +0.7 4,526,000 - Xcc-8004.4756.1 0.64 -0.8 4,526,000 - Xcc-8004.4756.1 0.64 +0.5 4,526,047 + Xcc-8004.4756.1 0.68 -1.6 4,526,047 + Xcc-8004.4756.1 0.68 -1.1 4,526,047 + Xcc-8004.4756.1 0.68 +1.0 4,526,048 - Xcc-8004.4756.1 0.68 -0.8 4,526,048 - Xcc-8004.4756.1 0.68 -0.1 4,526,048 - Xcc-8004.4756.1 0.68 +0.0 4,526,048 - Xcc-8004.4756.1 0.68 -0.7 4,526,048 - Xcc-8004.4756.1 0.68 -0.6 4,526,345 + Xcc-8004.4756.1 0.90 -0.1 4,526,345 + Xcc-8004.4756.1 0.90 -1.6 4,526,345 + Xcc-8004.4756.1 0.90 +0.0 4,526,345 + Xcc-8004.4756.1 0.90 +0.3 4,526,345 + Xcc-8004.4756.1 0.90 +1.1 4,526,345 + Xcc-8004.4756.1 0.90 -2.1 4,526,346 - Xcc-8004.4756.1 0.90 +0.0 4,526,346 - Xcc-8004.4756.1 0.90 -1.0 4,526,347 + Xcc-8004.4756.1 0.90 -0.9 4,526,348 - Xcc-8004.4756.1 0.90 +0.1 4,526,348 - Xcc-8004.4756.1 0.90 -0.8 4,526,386 + -0.7 4,526,538 + +1.2 4,526,538 + +0.5 4,527,385 + +0.3 4,527,385 + +0.4 4,527,385 + +0.1 4,527,386 - -0.4 4,527,438 - +0.7 4,527,722 + -0.2 4,527,722 + -0.0 4,527,723 - -0.3 4,527,723 - +0.7 4,527,927 - Xcc-8004.4759.1 0.12 +0.5 4,528,124 + Xcc-8004.4759.1 0.22 -0.0 4,528,124 + Xcc-8004.4759.1 0.22 -1.2 4,528,124 + Xcc-8004.4759.1 0.22 -3.0 4,528,124 + Xcc-8004.4759.1 0.22 -0.5 4,528,124 + Xcc-8004.4759.1 0.22 +0.6 4,528,125 - Xcc-8004.4759.1 0.22 -0.9 4,528,125 - Xcc-8004.4759.1 0.22 -0.1 4,528,227 + Xcc-8004.4759.1 0.28 +0.3 4,528,228 - Xcc-8004.4759.1 0.28 -1.2
Or see this region's nucleotide sequence