Experiment: Parafilmed volatile agar plate with no fungus
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4442.1 and Xcc-8004.4443.1 are separated by 207 nucleotides Xcc-8004.4443.1 and Xcc-8004.4444.1 overlap by 28 nucleotides Xcc-8004.4444.1 and Xcc-8004.4445.1 overlap by 4 nucleotides
Xcc-8004.4442.1: Xcc-8004.4442.1 - FIG01212138: hypothetical protein, at 4,258,678 to 4,259,100
Xcc-8004.4442.1
Xcc-8004.4443.1: Xcc-8004.4443.1 - putative; ORF located using Glimmer/Genemark, at 4,259,308 to 4,259,667
Xcc-8004.4443.1
Xcc-8004.4444.1: Xcc-8004.4444.1 - FIG000906: Predicted Permease, at 4,259,640 to 4,260,746
Xcc-8004.4444.1
Xcc-8004.4445.1: Xcc-8004.4445.1 - FIG000988: Predicted permease, at 4,260,743 to 4,261,825
Xcc-8004.4445.1
Position (kb) 4259
4260
4261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4258.705 kb on + strand at 4258.705 kb on + strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.706 kb on - strand at 4258.731 kb on - strand, within Xcc-8004.4442.1 at 4258.731 kb on - strand, within Xcc-8004.4442.1 at 4258.861 kb on + strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.862 kb on - strand, within Xcc-8004.4442.1 at 4258.966 kb on + strand, within Xcc-8004.4442.1 at 4258.967 kb on - strand, within Xcc-8004.4442.1 at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.122 kb on + strand at 4259.123 kb on - strand at 4259.123 kb on - strand at 4259.123 kb on - strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.174 kb on + strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.175 kb on - strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.176 kb on + strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.177 kb on - strand at 4259.190 kb on + strand at 4259.190 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.309 kb on + strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.310 kb on - strand at 4259.382 kb on + strand, within Xcc-8004.4443.1 at 4259.382 kb on + strand, within Xcc-8004.4443.1 at 4259.383 kb on - strand, within Xcc-8004.4443.1 at 4259.393 kb on + strand, within Xcc-8004.4443.1 at 4259.393 kb on + strand, within Xcc-8004.4443.1 at 4259.393 kb on + strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.394 kb on - strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.429 kb on + strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.430 kb on - strand, within Xcc-8004.4443.1 at 4259.509 kb on + strand, within Xcc-8004.4443.1 at 4259.510 kb on - strand, within Xcc-8004.4443.1 at 4259.510 kb on - strand, within Xcc-8004.4443.1 at 4259.591 kb on + strand, within Xcc-8004.4443.1 at 4259.591 kb on + strand, within Xcc-8004.4443.1 at 4259.591 kb on + strand, within Xcc-8004.4443.1 at 4259.592 kb on - strand, within Xcc-8004.4443.1 at 4259.592 kb on - strand, within Xcc-8004.4443.1 at 4260.716 kb on - strand at 4260.787 kb on - strand at 4260.787 kb on - strand at 4260.787 kb on - strand at 4260.787 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus remove 4,258,705 + -1.0 4,258,705 + +1.0 4,258,706 - -1.3 4,258,706 - +0.0 4,258,706 - -2.0 4,258,706 - +0.6 4,258,706 - +0.7 4,258,731 - Xcc-8004.4442.1 0.13 -0.9 4,258,731 - Xcc-8004.4442.1 0.13 -0.6 4,258,861 + Xcc-8004.4442.1 0.43 -0.6 4,258,862 - Xcc-8004.4442.1 0.43 -0.5 4,258,862 - Xcc-8004.4442.1 0.43 +0.6 4,258,862 - Xcc-8004.4442.1 0.43 +0.1 4,258,862 - Xcc-8004.4442.1 0.43 +0.4 4,258,966 + Xcc-8004.4442.1 0.68 -0.8 4,258,967 - Xcc-8004.4442.1 0.68 -1.2 4,259,122 + -3.1 4,259,122 + -2.9 4,259,122 + +0.9 4,259,122 + -0.9 4,259,122 + +0.4 4,259,123 - -1.3 4,259,123 - -0.7 4,259,123 - +0.3 4,259,174 + +0.6 4,259,174 + +1.0 4,259,174 + -0.5 4,259,174 + +0.2 4,259,174 + -0.2 4,259,174 + -2.2 4,259,174 + +1.1 4,259,174 + -0.0 4,259,175 - -0.5 4,259,175 - +0.8 4,259,175 - +0.9 4,259,175 - +1.9 4,259,175 - -0.9 4,259,175 - +3.5 4,259,175 - -1.6 4,259,175 - +1.0 4,259,176 + -0.6 4,259,176 + -1.7 4,259,176 + +0.1 4,259,176 + +3.0 4,259,176 + +0.8 4,259,176 + -0.5 4,259,176 + +0.2 4,259,177 - -0.9 4,259,177 - -0.7 4,259,177 - +0.5 4,259,177 - +0.7 4,259,177 - +0.2 4,259,177 - -1.5 4,259,177 - +2.1 4,259,190 + +0.5 4,259,190 + +1.9 4,259,309 + -0.0 4,259,309 + +0.6 4,259,309 + -1.9 4,259,309 + -0.1 4,259,309 + +1.2 4,259,309 + -3.1 4,259,309 + -2.4 4,259,309 + +0.5 4,259,310 - -2.3 4,259,310 - -3.5 4,259,310 - +0.5 4,259,310 - +0.2 4,259,310 - -0.3 4,259,310 - -1.3 4,259,310 - +0.0 4,259,310 - -0.0 4,259,310 - -0.7 4,259,310 - +0.1 4,259,382 + Xcc-8004.4443.1 0.21 +0.9 4,259,382 + Xcc-8004.4443.1 0.21 -0.8 4,259,383 - Xcc-8004.4443.1 0.21 +1.4 4,259,393 + Xcc-8004.4443.1 0.24 +0.3 4,259,393 + Xcc-8004.4443.1 0.24 -0.7 4,259,393 + Xcc-8004.4443.1 0.24 +1.6 4,259,394 - Xcc-8004.4443.1 0.24 +0.9 4,259,394 - Xcc-8004.4443.1 0.24 -0.7 4,259,394 - Xcc-8004.4443.1 0.24 +0.4 4,259,394 - Xcc-8004.4443.1 0.24 +0.5 4,259,429 + Xcc-8004.4443.1 0.34 -0.5 4,259,429 + Xcc-8004.4443.1 0.34 +0.4 4,259,429 + Xcc-8004.4443.1 0.34 +2.2 4,259,429 + Xcc-8004.4443.1 0.34 -1.2 4,259,429 + Xcc-8004.4443.1 0.34 -0.7 4,259,429 + Xcc-8004.4443.1 0.34 -0.6 4,259,429 + Xcc-8004.4443.1 0.34 +1.8 4,259,429 + Xcc-8004.4443.1 0.34 +0.1 4,259,429 + Xcc-8004.4443.1 0.34 -0.5 4,259,429 + Xcc-8004.4443.1 0.34 -0.4 4,259,429 + Xcc-8004.4443.1 0.34 -1.8 4,259,429 + Xcc-8004.4443.1 0.34 -0.4 4,259,429 + Xcc-8004.4443.1 0.34 +0.1 4,259,430 - Xcc-8004.4443.1 0.34 +2.3 4,259,430 - Xcc-8004.4443.1 0.34 +0.7 4,259,430 - Xcc-8004.4443.1 0.34 +0.3 4,259,430 - Xcc-8004.4443.1 0.34 +0.6 4,259,430 - Xcc-8004.4443.1 0.34 -0.5 4,259,430 - Xcc-8004.4443.1 0.34 +1.2 4,259,430 - Xcc-8004.4443.1 0.34 -0.9 4,259,430 - Xcc-8004.4443.1 0.34 -1.4 4,259,430 - Xcc-8004.4443.1 0.34 +0.3 4,259,509 + Xcc-8004.4443.1 0.56 +0.5 4,259,510 - Xcc-8004.4443.1 0.56 -0.7 4,259,510 - Xcc-8004.4443.1 0.56 +0.7 4,259,591 + Xcc-8004.4443.1 0.79 +1.1 4,259,591 + Xcc-8004.4443.1 0.79 +1.2 4,259,591 + Xcc-8004.4443.1 0.79 -0.4 4,259,592 - Xcc-8004.4443.1 0.79 +1.0 4,259,592 - Xcc-8004.4443.1 0.79 +0.3 4,260,716 - +0.2 4,260,787 - -2.3 4,260,787 - +0.2 4,260,787 - +1.9 4,260,787 - +0.4
Or see this region's nucleotide sequence