Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4396.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4395.1 and Xcc-8004.4396.1 overlap by 4 nucleotidesXcc-8004.4396.1 and Xcc-8004.4397.1 overlap by 4 nucleotidesXcc-8004.4397.1 and Xcc-8004.4398.1 are separated by 101 nucleotides Xcc-8004.4395.1: Xcc-8004.4395.1 - Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193), at 4,204,370 to 4,205,464 Xcc-8004.4395.1 Xcc-8004.4396.1: Xcc-8004.4396.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 4,205,461 to 4,205,943 Xcc-8004.4396.1 Xcc-8004.4397.1: Xcc-8004.4397.1 - Ribonucleotide reductase transcriptional regulator NrdR, at 4,205,940 to 4,206,464 Xcc-8004.4397.1 Xcc-8004.4398.1: Xcc-8004.4398.1 - Serine hydroxymethyltransferase (EC 2.1.2.1), at 4,206,566 to 4,207,819 Xcc-8004.4398.1 Position (kb) 4205 4206Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4205.470 kb on + strandat 4205.494 kb on + strandat 4205.494 kb on + strandat 4205.494 kb on + strandat 4205.495 kb on - strandat 4205.495 kb on - strandat 4205.555 kb on + strand, within Xcc-8004.4396.1at 4205.579 kb on + strand, within Xcc-8004.4396.1at 4205.579 kb on + strand, within Xcc-8004.4396.1at 4205.579 kb on + strand, within Xcc-8004.4396.1at 4205.580 kb on - strand, within Xcc-8004.4396.1at 4205.580 kb on - strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.585 kb on + strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.586 kb on - strand, within Xcc-8004.4396.1at 4205.678 kb on + strand, within Xcc-8004.4396.1at 4205.679 kb on - strand, within Xcc-8004.4396.1at 4205.679 kb on - strand, within Xcc-8004.4396.1at 4205.679 kb on - strand, within Xcc-8004.4396.1at 4206.516 kb on - strandat 4206.532 kb on + strandat 4206.533 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.574 kb on - strandat 4206.582 kb on + strandat 4206.582 kb on + strandat 4206.713 kb on - strand, within Xcc-8004.4398.1at 4206.713 kb on - strand, within Xcc-8004.4398.1at 4206.901 kb on - strand, within Xcc-8004.4398.1at 4206.901 kb on - strand, within Xcc-8004.4398.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,205,470 + +1.0
4,205,494 + +3.3
4,205,494 + -1.0
4,205,494 + -2.3
4,205,495 - +1.4
4,205,495 - +1.5
4,205,555 + Xcc-8004.4396.1 0.19 -0.7
4,205,579 + Xcc-8004.4396.1 0.24 +3.4
4,205,579 + Xcc-8004.4396.1 0.24 -2.1
4,205,579 + Xcc-8004.4396.1 0.24 +0.3
4,205,580 - Xcc-8004.4396.1 0.25 -0.8
4,205,580 - Xcc-8004.4396.1 0.25 +0.5
4,205,585 + Xcc-8004.4396.1 0.26 +0.7
4,205,585 + Xcc-8004.4396.1 0.26 -0.4
4,205,585 + Xcc-8004.4396.1 0.26 -1.8
4,205,585 + Xcc-8004.4396.1 0.26 -1.9
4,205,585 + Xcc-8004.4396.1 0.26 -0.0
4,205,585 + Xcc-8004.4396.1 0.26 +0.6
4,205,585 + Xcc-8004.4396.1 0.26 -0.3
4,205,585 + Xcc-8004.4396.1 0.26 -0.4
4,205,585 + Xcc-8004.4396.1 0.26 -0.7
4,205,585 + Xcc-8004.4396.1 0.26 -1.6
4,205,585 + Xcc-8004.4396.1 0.26 -0.2
4,205,585 + Xcc-8004.4396.1 0.26 -0.7
4,205,585 + Xcc-8004.4396.1 0.26 +0.9
4,205,586 - Xcc-8004.4396.1 0.26 -0.0
4,205,586 - Xcc-8004.4396.1 0.26 -1.9
4,205,586 - Xcc-8004.4396.1 0.26 -0.7
4,205,586 - Xcc-8004.4396.1 0.26 -0.2
4,205,586 - Xcc-8004.4396.1 0.26 -1.4
4,205,586 - Xcc-8004.4396.1 0.26 +0.0
4,205,586 - Xcc-8004.4396.1 0.26 -0.8
4,205,678 + Xcc-8004.4396.1 0.45 +0.5
4,205,679 - Xcc-8004.4396.1 0.45 -1.2
4,205,679 - Xcc-8004.4396.1 0.45 +0.6
4,205,679 - Xcc-8004.4396.1 0.45 -0.5
4,206,516 - +1.4
4,206,532 + -2.1
4,206,533 - +1.3
4,206,574 - -0.7
4,206,574 - -0.8
4,206,574 - -0.9
4,206,574 - +1.6
4,206,574 - +0.5
4,206,574 - -0.5
4,206,582 + -0.1
4,206,582 + -1.2
4,206,713 - Xcc-8004.4398.1 0.12 -1.8
4,206,713 - Xcc-8004.4398.1 0.12 +0.4
4,206,901 - Xcc-8004.4398.1 0.27 -0.5
4,206,901 - Xcc-8004.4398.1 0.27 +0.2

Or see this region's nucleotide sequence