Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4237.1

Experiment: Parafilmed volatile agar plate with no fungus

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4236.1 and Xcc-8004.4237.1 are separated by 43 nucleotidesXcc-8004.4237.1 and Xcc-8004.4238.1 are separated by 125 nucleotides Xcc-8004.4236.1: Xcc-8004.4236.1 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 4,059,877 to 4,061,625 Xcc-8004.4236.1 Xcc-8004.4237.1: Xcc-8004.4237.1 - hypothetical protein, at 4,061,669 to 4,062,412 Xcc-8004.4237.1 Xcc-8004.4238.1: Xcc-8004.4238.1 - putative membrane protein, at 4,062,538 to 4,063,467 Xcc-8004.4238.1 Position (kb) 4061 4062 4063Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4061.691 kb on + strandat 4061.691 kb on + strandat 4061.691 kb on + strandat 4061.691 kb on + strandat 4061.691 kb on + strandat 4061.691 kb on + strandat 4061.691 kb on + strandat 4061.691 kb on + strandat 4061.692 kb on - strandat 4061.692 kb on - strandat 4061.692 kb on - strandat 4061.700 kb on - strandat 4061.700 kb on - strandat 4062.013 kb on - strand, within Xcc-8004.4237.1at 4062.013 kb on - strand, within Xcc-8004.4237.1at 4062.013 kb on - strand, within Xcc-8004.4237.1at 4062.158 kb on + strand, within Xcc-8004.4237.1at 4062.158 kb on + strand, within Xcc-8004.4237.1at 4062.184 kb on - strand, within Xcc-8004.4237.1at 4062.274 kb on + strand, within Xcc-8004.4237.1at 4062.275 kb on - strand, within Xcc-8004.4237.1at 4062.661 kb on + strand, within Xcc-8004.4238.1at 4062.671 kb on - strand, within Xcc-8004.4238.1at 4062.671 kb on - strand, within Xcc-8004.4238.1at 4062.671 kb on - strand, within Xcc-8004.4238.1at 4062.784 kb on + strand, within Xcc-8004.4238.1at 4062.784 kb on + strand, within Xcc-8004.4238.1at 4062.784 kb on + strand, within Xcc-8004.4238.1at 4062.784 kb on + strand, within Xcc-8004.4238.1at 4062.784 kb on + strand, within Xcc-8004.4238.1at 4062.785 kb on - strand, within Xcc-8004.4238.1at 4062.787 kb on + strand, within Xcc-8004.4238.1at 4062.787 kb on + strand, within Xcc-8004.4238.1at 4062.787 kb on + strand, within Xcc-8004.4238.1at 4062.787 kb on + strand, within Xcc-8004.4238.1at 4062.787 kb on + strand, within Xcc-8004.4238.1at 4062.787 kb on + strand, within Xcc-8004.4238.1at 4062.788 kb on - strand, within Xcc-8004.4238.1at 4062.788 kb on - strand, within Xcc-8004.4238.1at 4062.788 kb on - strand, within Xcc-8004.4238.1at 4062.788 kb on - strand, within Xcc-8004.4238.1at 4063.063 kb on + strand, within Xcc-8004.4238.1at 4063.063 kb on + strand, within Xcc-8004.4238.1at 4063.063 kb on + strand, within Xcc-8004.4238.1at 4063.064 kb on - strand, within Xcc-8004.4238.1at 4063.064 kb on - strand, within Xcc-8004.4238.1at 4063.064 kb on - strand, within Xcc-8004.4238.1at 4063.064 kb on - strand, within Xcc-8004.4238.1at 4063.163 kb on + strand, within Xcc-8004.4238.1at 4063.163 kb on + strand, within Xcc-8004.4238.1at 4063.163 kb on + strand, within Xcc-8004.4238.1at 4063.164 kb on - strand, within Xcc-8004.4238.1at 4063.164 kb on - strand, within Xcc-8004.4238.1at 4063.358 kb on - strand, within Xcc-8004.4238.1at 4063.358 kb on - strand, within Xcc-8004.4238.1at 4063.358 kb on - strand, within Xcc-8004.4238.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
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4,061,691 + -0.6
4,061,691 + -0.5
4,061,691 + +0.5
4,061,691 + -2.0
4,061,691 + -0.1
4,061,691 + +0.4
4,061,691 + -1.1
4,061,691 + -0.8
4,061,692 - +1.1
4,061,692 - +1.0
4,061,692 - -0.6
4,061,700 - +1.8
4,061,700 - +0.0
4,062,013 - Xcc-8004.4237.1 0.46 +0.5
4,062,013 - Xcc-8004.4237.1 0.46 -0.8
4,062,013 - Xcc-8004.4237.1 0.46 +0.2
4,062,158 + Xcc-8004.4237.1 0.66 +0.6
4,062,158 + Xcc-8004.4237.1 0.66 -0.8
4,062,184 - Xcc-8004.4237.1 0.69 +1.7
4,062,274 + Xcc-8004.4237.1 0.81 +2.2
4,062,275 - Xcc-8004.4237.1 0.81 -0.0
4,062,661 + Xcc-8004.4238.1 0.13 +0.2
4,062,671 - Xcc-8004.4238.1 0.14 -0.2
4,062,671 - Xcc-8004.4238.1 0.14 +1.1
4,062,671 - Xcc-8004.4238.1 0.14 +0.8
4,062,784 + Xcc-8004.4238.1 0.26 -0.4
4,062,784 + Xcc-8004.4238.1 0.26 -1.0
4,062,784 + Xcc-8004.4238.1 0.26 -0.5
4,062,784 + Xcc-8004.4238.1 0.26 +0.6
4,062,784 + Xcc-8004.4238.1 0.26 -0.0
4,062,785 - Xcc-8004.4238.1 0.27 +0.9
4,062,787 + Xcc-8004.4238.1 0.27 +3.1
4,062,787 + Xcc-8004.4238.1 0.27 -0.1
4,062,787 + Xcc-8004.4238.1 0.27 +0.6
4,062,787 + Xcc-8004.4238.1 0.27 -1.0
4,062,787 + Xcc-8004.4238.1 0.27 -1.3
4,062,787 + Xcc-8004.4238.1 0.27 -1.2
4,062,788 - Xcc-8004.4238.1 0.27 +0.7
4,062,788 - Xcc-8004.4238.1 0.27 +0.5
4,062,788 - Xcc-8004.4238.1 0.27 -1.0
4,062,788 - Xcc-8004.4238.1 0.27 +0.5
4,063,063 + Xcc-8004.4238.1 0.56 -0.7
4,063,063 + Xcc-8004.4238.1 0.56 -0.1
4,063,063 + Xcc-8004.4238.1 0.56 -0.6
4,063,064 - Xcc-8004.4238.1 0.57 +1.6
4,063,064 - Xcc-8004.4238.1 0.57 -2.4
4,063,064 - Xcc-8004.4238.1 0.57 +2.7
4,063,064 - Xcc-8004.4238.1 0.57 -2.4
4,063,163 + Xcc-8004.4238.1 0.67 -2.2
4,063,163 + Xcc-8004.4238.1 0.67 -0.5
4,063,163 + Xcc-8004.4238.1 0.67 -1.4
4,063,164 - Xcc-8004.4238.1 0.67 +0.1
4,063,164 - Xcc-8004.4238.1 0.67 +0.5
4,063,358 - Xcc-8004.4238.1 0.88 +0.4
4,063,358 - Xcc-8004.4238.1 0.88 -0.7
4,063,358 - Xcc-8004.4238.1 0.88 -0.4

Or see this region's nucleotide sequence