Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00775

Experiment: H2 N-free with 10mM Glycine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMMP_RS00765 and MMP_RS00770 are separated by 49 nucleotidesMMP_RS00770 and MMP_RS00775 are separated by 270 nucleotidesMMP_RS00775 and MMP_RS00780 are separated by 17 nucleotidesMMP_RS00780 and MMP_RS00785 are separated by 56 nucleotides MMP_RS00765: MMP_RS00765 - IMP dehydrogenase, at 139,445 to 140,947 _RS00765 MMP_RS00770: MMP_RS00770 - hypothetical protein, at 140,997 to 141,341 _RS00770 MMP_RS00775: MMP_RS00775 - threonine synthase, at 141,612 to 142,826 _RS00775 MMP_RS00780: MMP_RS00780 - 3-isopropylmalate dehydratase small subunit, at 142,844 to 143,347 _RS00780 MMP_RS00785: MMP_RS00785 - deoxyhypusine synthase, at 143,404 to 144,411 _RS00785 Position (kb) 141 142 143Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 140.898 kb on - strandat 140.927 kb on - strandat 140.977 kb on - strandat 140.977 kb on - strandat 140.981 kb on - strandat 140.982 kb on + strandat 141.194 kb on - strand, within MMP_RS00770at 141.195 kb on + strand, within MMP_RS00770at 141.226 kb on - strand, within MMP_RS00770at 141.319 kb on - strandat 141.340 kb on + strandat 141.396 kb on - strandat 141.400 kb on - strandat 141.426 kb on - strandat 141.427 kb on + strandat 141.428 kb on - strandat 141.429 kb on + strandat 141.429 kb on + strandat 141.429 kb on + strandat 141.429 kb on + strandat 141.430 kb on - strandat 141.431 kb on + strandat 141.431 kb on + strandat 141.431 kb on + strandat 141.431 kb on + strandat 141.459 kb on - strandat 141.460 kb on + strandat 141.485 kb on + strandat 141.531 kb on + strandat 141.557 kb on + strandat 141.562 kb on - strandat 141.611 kb on - strandat 141.612 kb on + strandat 141.631 kb on - strandat 141.787 kb on - strandat 142.197 kb on - strandat 142.346 kb on - strandat 142.920 kb on + strandat 142.928 kb on - strandat 142.928 kb on - strandat 142.930 kb on - strandat 142.931 kb on + strandat 143.080 kb on + strandat 143.430 kb on - strandat 143.606 kb on - strandat 143.624 kb on + strandat 143.668 kb on - strandat 143.825 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction H2 N-free with 10mM Glycine
remove
140,898 - -1.3
140,927 - -1.9
140,977 - -0.6
140,977 - -3.0
140,981 - -0.2
140,982 + -0.4
141,194 - MMP_RS00770 0.57 -2.7
141,195 + MMP_RS00770 0.57 -0.1
141,226 - MMP_RS00770 0.66 -0.1
141,319 - +0.9
141,340 + -0.9
141,396 - -1.2
141,400 - -0.9
141,426 - -2.2
141,427 + -0.8
141,428 - -0.6
141,429 + +0.6
141,429 + +0.3
141,429 + +0.7
141,429 + -2.5
141,430 - +0.9
141,431 + -0.1
141,431 + -1.0
141,431 + -0.4
141,431 + -0.2
141,459 - -0.4
141,460 + -0.7
141,485 + +1.2
141,531 + -0.4
141,557 + -0.6
141,562 - -3.3
141,611 - -3.5
141,612 + -3.0
141,631 - -3.3
141,787 - -3.2
142,197 - -1.7
142,346 - -1.7
142,920 + -2.4
142,928 - -3.2
142,928 - -4.2
142,930 - -1.0
142,931 + -2.5
143,080 + -2.2
143,430 - -2.0
143,606 - -2.6
143,624 + -2.7
143,668 - -2.3
143,825 + -0.2

Or see this region's nucleotide sequence