Strain Fitness in Pantoea sp. MT58 around IAI47_10675

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=2hrs; Outgrowth=LBkan50
2,259,463	+				-1.2
2,259,480	+				+1.1
2,259,559	+				+0.7
2,259,560	-				-0.1
2,259,560	-				+0.5
2,259,560	-				-0.8
2,259,560	-				+2.2
2,259,562	+				-1.8
2,259,563	-				+1.7
2,259,582	-				+1.2
2,259,706	+		IAI47_10670	0.15	+0.3
2,259,796	+		IAI47_10670	0.27	+1.2
2,259,796	+		IAI47_10670	0.27	+1.0
2,259,827	+		IAI47_10670	0.31	+1.0
2,259,853	+		IAI47_10670	0.34	-1.1
2,259,853	+		IAI47_10670	0.34	-0.9
2,259,853	+		IAI47_10670	0.34	-1.5
2,259,854	-		IAI47_10670	0.34	-2.6
2,259,956	+		IAI47_10670	0.47	+1.0
2,259,956	+		IAI47_10670	0.47	-1.2
2,259,956	+		IAI47_10670	0.47	+0.2
2,259,957	-		IAI47_10670	0.48	-1.1
2,259,976	-		IAI47_10670	0.50	-0.3
2,260,046	+		IAI47_10670	0.59	-1.7
2,260,046	+		IAI47_10670	0.59	+0.6
2,260,046	+		IAI47_10670	0.59	-1.2
2,260,047	-		IAI47_10670	0.59	-0.9
2,260,047	-		IAI47_10670	0.59	-0.3
2,260,047	-		IAI47_10670	0.59	+1.2
2,260,048	+		IAI47_10670	0.59	+1.6
2,260,049	-		IAI47_10670	0.60	-1.9
2,260,070	-		IAI47_10670	0.62	+1.5
2,260,094	-		IAI47_10670	0.65	+0.9
2,260,117	-		IAI47_10670	0.68	-0.6
2,260,144	+		IAI47_10670	0.72	-1.4
2,260,144	+		IAI47_10670	0.72	-1.2
2,260,145	-		IAI47_10670	0.72	-1.3
2,260,286	+				-0.5
2,260,286	+				-0.2
2,260,286	+				-0.8
2,260,287	-				-0.1
2,260,287	-				-0.9
2,260,287	-				-0.1
2,260,287	-				-1.3
2,260,288	+				-1.7
2,260,289	-				-0.0
2,260,289	-				-0.3
2,260,291	+				+0.9
2,260,291	+				+0.1
2,260,346	-				+2.2
2,260,355	+				+0.3
2,260,355	+				+0.5
2,260,355	+				-0.6
2,260,355	+				+1.3
2,260,356	-				-1.3
2,260,359	+				-1.0
2,260,376	+				-0.7
2,260,377	-				+0.4
2,260,422	+				+0.0
2,260,433	+				-0.8
2,260,445	+				+0.4
2,260,446	-				+2.6
2,260,460	-				-0.1
2,260,515	-		IAI47_10675	0.21	+2.2
2,260,545	-		IAI47_10675	0.32	+2.1
2,260,565	+		IAI47_10675	0.39	-0.2
2,260,565	+		IAI47_10675	0.39	+0.8
2,260,565	+		IAI47_10675	0.39	+0.3
2,260,566	-		IAI47_10675	0.39	+2.4
2,260,566	-		IAI47_10675	0.39	-0.3
2,260,566	-		IAI47_10675	0.39	+1.1
2,260,616	-		IAI47_10675	0.57	+0.7
2,260,616	-		IAI47_10675	0.57	+0.1
2,260,616	-		IAI47_10675	0.57	+1.4
2,260,616	-		IAI47_10675	0.57	+2.0
2,260,658	+		IAI47_10675	0.72	-0.2
2,260,677	+		IAI47_10675	0.79	-2.7
2,260,715	-				-0.7
2,260,718	-				+2.0
2,260,718	-				-0.4
2,260,727	+				+0.9
2,260,728	-				+0.3
2,260,737	-				+0.8
2,260,737	-				+0.2
2,260,748	+				+0.5
2,260,757	+				-1.7
2,260,757	+				+0.6
2,260,757	+				-1.1
2,260,758	-				+0.5
2,260,758	-				+0.2
2,260,758	-				-0.6
2,260,758	-				+1.4
2,260,758	-				+0.2
2,260,758	-				-0.4
2,260,761	+				-0.1
2,260,762	-				+1.1
2,260,762	-				+1.3
2,260,762	-				-1.0
2,260,767	-				+0.9
2,260,803	+				-1.0
2,260,804	-				+2.7
2,260,820	-				-0.4
2,260,836	-				-0.7
2,260,841	+				-0.4
2,260,859	+				-2.3
2,260,860	-				+1.6
2,260,880	+				+0.3
2,260,881	+				-0.1
2,260,881	+				-1.6
2,260,882	-				-1.0
2,260,882	-				+0.8
2,260,882	-				-0.7
2,260,884	-				-0.1
2,260,884	-				-0.8
2,260,884	-				+0.2
2,260,900	+				-2.2
2,260,901	-				-2.0
2,260,946	+				-0.4
2,260,960	+				-0.2
2,260,960	+				-0.6
2,260,960	+				+0.0
2,260,961	-				-1.2
2,260,961	-				-0.4
2,260,967	-				+1.1
2,260,972	+				+2.8
2,260,972	+				-2.0
2,260,972	+				-1.4
2,260,973	-				+0.3
2,260,973	-				-0.1
2,260,983	+				-2.2
2,261,004	-				-0.3
2,261,054	-				-0.2
2,261,054	-				-2.0
2,261,054	-				+0.8
2,261,054	-				+0.2
2,261,058	-				-1.0
2,261,067	+				-2.2
2,261,068	-				+1.4
2,261,073	+				-0.2
2,261,073	+				+0.1
2,261,074	-				+0.4
2,261,086	-				+0.1
2,261,095	-				-1.2
2,261,113	+				-0.5
2,261,113	+				-0.1
2,261,113	+				-0.4
2,261,113	+				+2.0
2,261,113	+				-0.3
2,261,113	+				-0.8
2,261,113	+				+0.2
2,261,113	+				+0.1
2,261,114	-				-0.6
2,261,114	-				-0.2
2,261,114	-				-0.0
2,261,114	-				-0.4
2,261,114	-				-0.3
2,261,114	-				-0.4
2,261,114	-				+1.0
2,261,114	-				-0.1
2,261,114	-				+0.4
2,261,114	-				+0.9
2,261,119	+				+0.1
2,261,119	+				-0.2
2,261,120	-				+0.1
2,261,120	-				+0.0
2,261,120	-				-1.3
2,261,120	-				+0.2
2,261,126	-				-0.1
2,261,126	-				-1.2
2,261,171	+				+0.6
2,261,171	+				-0.4
2,261,206	+				-0.4
2,261,206	+				+1.3
2,261,207	-				+0.2
2,261,207	-				-1.6
2,261,207	-				-0.8
2,261,207	-				-0.2
2,261,207	-				+1.3
2,261,212	+				+0.5
2,261,232	-				+2.0
2,261,232	-				+0.5
2,261,322	+				+0.2
2,261,322	+				+2.7
2,261,322	+				+0.4
2,261,322	+				+0.8
2,261,323	-				-0.3
2,261,323	-				-0.4
2,261,323	-				-0.9
2,261,323	-				-0.6
2,261,381	+		IAI47_10680	0.19	+0.7
2,261,381	+		IAI47_10680	0.19	+1.5
2,261,381	+		IAI47_10680	0.19	-0.2
2,261,394	+		IAI47_10680	0.22	+1.0
2,261,459	+		IAI47_10680	0.34	+0.9
2,261,580	+		IAI47_10680	0.56	+0.4
2,261,580	+		IAI47_10680	0.56	+1.2
2,261,580	+		IAI47_10680	0.56	-0.7
2,261,580	+		IAI47_10680	0.56	+0.2
2,261,581	-		IAI47_10680	0.56	-1.3
2,261,581	-		IAI47_10680	0.56	+0.6
2,261,643	+		IAI47_10680	0.67	+0.7
2,261,643	+		IAI47_10680	0.67	+5.4
2,261,643	+		IAI47_10680	0.67	+1.3
2,261,643	+		IAI47_10680	0.67	+1.4
2,261,643	+		IAI47_10680	0.67	+1.9
2,261,643	+		IAI47_10680	0.67	+0.4
2,261,643	+		IAI47_10680	0.67	+0.1
2,261,644	-		IAI47_10680	0.68	+0.8
2,261,644	-		IAI47_10680	0.68	-0.3
2,261,644	-		IAI47_10680	0.68	+0.1
2,261,644	-		IAI47_10680	0.68	-1.7
2,261,644	-		IAI47_10680	0.68	-0.2
2,261,647	+		IAI47_10680	0.68	+1.4
2,261,647	+		IAI47_10680	0.68	+0.6
2,261,647	+		IAI47_10680	0.68	+1.4
2,261,647	+		IAI47_10680	0.68	+2.1
2,261,648	-		IAI47_10680	0.68	-0.3
2,261,648	-		IAI47_10680	0.68	-1.0
2,261,670	+		IAI47_10680	0.72	-0.1
2,261,670	+		IAI47_10680	0.72	+0.1
2,261,670	+		IAI47_10680	0.72	+0.7
2,261,671	-		IAI47_10680	0.73	-0.4
2,261,671	-		IAI47_10680	0.73	-1.7
2,261,729	+		IAI47_10680	0.83	+0.5
2,261,730	-		IAI47_10680	0.83	-0.6
2,261,732	+		IAI47_10680	0.84	+0.8
2,261,732	+		IAI47_10680	0.84	+1.4
2,261,733	-		IAI47_10680	0.84	+0.0
2,261,733	-		IAI47_10680	0.84	+1.2