Experiment: m.b. Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02320 and PGA1_262p02330 are separated by 2 nucleotides PGA1_262p02330 and PGA1_262p02340 overlap by 4 nucleotides PGA1_262p02340 and PGA1_262p02350 are separated by 104 nucleotides
PGA1_262p02320: PGA1_262p02320 - putative acetolactate synthase isozyme 1 large subunit, at 253,789 to 255,444
_262p02320
PGA1_262p02330: PGA1_262p02330 - putative aspartate aminotransferase, at 255,447 to 256,634
_262p02330
PGA1_262p02340: PGA1_262p02340 - putative transcriptional regulator, TetR family, at 256,631 to 257,278
_262p02340
PGA1_262p02350: PGA1_262p02350 - histidine transport ATP-binding protein HisP, at 257,383 to 258,228
_262p02350
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1 at 254.590 kb on - strand, within PGA1_262p02320 at 254.592 kb on + strand, within PGA1_262p02320 at 254.655 kb on - strand, within PGA1_262p02320 at 254.765 kb on - strand, within PGA1_262p02320 at 254.770 kb on - strand, within PGA1_262p02320 at 254.847 kb on + strand, within PGA1_262p02320 at 254.855 kb on + strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.863 kb on - strand, within PGA1_262p02320 at 254.948 kb on + strand, within PGA1_262p02320 at 254.956 kb on - strand, within PGA1_262p02320 at 254.994 kb on + strand, within PGA1_262p02320 at 255.013 kb on - strand, within PGA1_262p02320 at 255.142 kb on - strand, within PGA1_262p02320 at 255.198 kb on + strand, within PGA1_262p02320 at 255.201 kb on - strand, within PGA1_262p02320 at 255.228 kb on - strand, within PGA1_262p02320 at 255.246 kb on + strand, within PGA1_262p02320 at 255.254 kb on - strand, within PGA1_262p02320 at 255.463 kb on + strand at 255.598 kb on - strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.674 kb on + strand, within PGA1_262p02330 at 255.705 kb on - strand, within PGA1_262p02330 at 255.794 kb on + strand, within PGA1_262p02330 at 255.873 kb on - strand, within PGA1_262p02330 at 255.895 kb on + strand, within PGA1_262p02330 at 255.962 kb on - strand, within PGA1_262p02330 at 256.032 kb on + strand, within PGA1_262p02330 at 256.094 kb on - strand, within PGA1_262p02330 at 256.100 kb on + strand, within PGA1_262p02330 at 256.225 kb on + strand, within PGA1_262p02330 at 256.432 kb on - strand, within PGA1_262p02330 at 256.490 kb on + strand, within PGA1_262p02330 at 256.509 kb on + strand, within PGA1_262p02330 at 256.575 kb on - strand at 256.585 kb on - strand at 256.609 kb on + strand at 256.644 kb on + strand at 256.652 kb on - strand at 256.666 kb on - strand at 257.175 kb on - strand, within PGA1_262p02340 at 257.287 kb on + strand at 257.295 kb on - strand at 257.300 kb on + strand at 257.445 kb on - strand at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.532 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.540 kb on + strand, within PGA1_262p02350 at 257.570 kb on - strand, within PGA1_262p02350 at 257.619 kb on - strand, within PGA1_262p02350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.16 mM remove 254,590 - PGA1_262p02320 0.48 +0.0 254,592 + PGA1_262p02320 0.48 -0.7 254,655 - PGA1_262p02320 0.52 +0.2 254,765 - PGA1_262p02320 0.59 -1.2 254,770 - PGA1_262p02320 0.59 +0.4 254,847 + PGA1_262p02320 0.64 -1.5 254,855 + PGA1_262p02320 0.64 -1.2 254,863 - PGA1_262p02320 0.65 -1.0 254,863 - PGA1_262p02320 0.65 +0.8 254,863 - PGA1_262p02320 0.65 +0.6 254,863 - PGA1_262p02320 0.65 +0.8 254,863 - PGA1_262p02320 0.65 +1.2 254,948 + PGA1_262p02320 0.70 -0.0 254,956 - PGA1_262p02320 0.70 -1.1 254,994 + PGA1_262p02320 0.73 -0.1 255,013 - PGA1_262p02320 0.74 -0.5 255,142 - PGA1_262p02320 0.82 -1.6 255,198 + PGA1_262p02320 0.85 -0.0 255,201 - PGA1_262p02320 0.85 +1.1 255,228 - PGA1_262p02320 0.87 -0.1 255,246 + PGA1_262p02320 0.88 +0.1 255,254 - PGA1_262p02320 0.88 -0.9 255,463 + +1.0 255,598 - PGA1_262p02330 0.13 -1.1 255,674 + PGA1_262p02330 0.19 +1.2 255,674 + PGA1_262p02330 0.19 +1.7 255,705 - PGA1_262p02330 0.22 -1.5 255,794 + PGA1_262p02330 0.29 +0.7 255,873 - PGA1_262p02330 0.36 -0.3 255,895 + PGA1_262p02330 0.38 -0.6 255,962 - PGA1_262p02330 0.43 +0.5 256,032 + PGA1_262p02330 0.49 +1.1 256,094 - PGA1_262p02330 0.54 +0.3 256,100 + PGA1_262p02330 0.55 -0.8 256,225 + PGA1_262p02330 0.65 +0.1 256,432 - PGA1_262p02330 0.83 +0.1 256,490 + PGA1_262p02330 0.88 -1.6 256,509 + PGA1_262p02330 0.89 -0.2 256,575 - +0.1 256,585 - -0.5 256,609 + -1.1 256,644 + -0.0 256,652 - -0.2 256,666 - -0.2 257,175 - PGA1_262p02340 0.84 -0.5 257,287 + +0.7 257,295 - -2.1 257,300 + -0.2 257,445 - +0.1 257,532 + PGA1_262p02350 0.18 +1.3 257,532 + PGA1_262p02350 0.18 -1.1 257,532 + PGA1_262p02350 0.18 -0.8 257,540 + PGA1_262p02350 0.19 +1.1 257,540 + PGA1_262p02350 0.19 +1.3 257,570 - PGA1_262p02350 0.22 +0.6 257,619 - PGA1_262p02350 0.28 +1.2
Or see this region's nucleotide sequence