Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3370 and HP15_3371 are separated by 157 nucleotides HP15_3371 and HP15_3372 are separated by 50 nucleotides HP15_3372 and HP15_3373 are separated by 170 nucleotides
HP15_3370: HP15_3370 - alanine dehydrogenase, at 3,536,886 to 3,538,004
_3370
HP15_3371: HP15_3371 - dienelactone hydrolase family protein, at 3,538,162 to 3,538,965
_3371
HP15_3372: HP15_3372 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,539,016 to 3,539,711
_3372
HP15_3373: HP15_3373 - cold shock, CspA, at 3,539,882 to 3,540,088
_3373
Position (kb)
3538
3539 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3537.182 kb on - strand, within HP15_3370 at 3537.194 kb on + strand, within HP15_3370 at 3537.310 kb on + strand, within HP15_3370 at 3537.363 kb on - strand, within HP15_3370 at 3537.398 kb on + strand, within HP15_3370 at 3537.411 kb on + strand, within HP15_3370 at 3537.419 kb on - strand, within HP15_3370 at 3537.419 kb on - strand, within HP15_3370 at 3537.465 kb on + strand, within HP15_3370 at 3537.480 kb on + strand, within HP15_3370 at 3537.551 kb on - strand, within HP15_3370 at 3537.621 kb on + strand, within HP15_3370 at 3537.651 kb on + strand, within HP15_3370 at 3537.651 kb on + strand, within HP15_3370 at 3537.678 kb on - strand, within HP15_3370 at 3537.710 kb on + strand, within HP15_3370 at 3537.734 kb on - strand, within HP15_3370 at 3537.914 kb on - strand at 3537.916 kb on - strand at 3537.971 kb on - strand at 3538.020 kb on - strand at 3538.062 kb on + strand at 3538.070 kb on - strand at 3538.070 kb on - strand at 3538.092 kb on - strand at 3538.148 kb on + strand at 3538.148 kb on + strand at 3538.156 kb on - strand at 3538.158 kb on + strand at 3538.158 kb on + strand at 3538.158 kb on - strand at 3538.166 kb on - strand at 3538.205 kb on - strand at 3538.252 kb on + strand, within HP15_3371 at 3538.320 kb on - strand, within HP15_3371 at 3538.374 kb on + strand, within HP15_3371 at 3538.455 kb on + strand, within HP15_3371 at 3538.463 kb on - strand, within HP15_3371 at 3538.579 kb on + strand, within HP15_3371 at 3538.636 kb on + strand, within HP15_3371 at 3538.636 kb on + strand, within HP15_3371 at 3538.644 kb on - strand, within HP15_3371 at 3538.666 kb on + strand, within HP15_3371 at 3538.674 kb on - strand, within HP15_3371 at 3538.692 kb on + strand, within HP15_3371 at 3538.727 kb on - strand, within HP15_3371 at 3538.759 kb on - strand, within HP15_3371 at 3538.773 kb on + strand, within HP15_3371 at 3538.781 kb on - strand, within HP15_3371 at 3538.960 kb on + strand at 3538.968 kb on - strand at 3538.972 kb on + strand at 3539.027 kb on + strand at 3539.027 kb on + strand at 3539.035 kb on - strand at 3539.035 kb on - strand at 3539.074 kb on + strand at 3539.119 kb on + strand, within HP15_3372 at 3539.127 kb on - strand, within HP15_3372 at 3539.134 kb on - strand, within HP15_3372 at 3539.317 kb on + strand, within HP15_3372 at 3539.327 kb on + strand, within HP15_3372 at 3539.383 kb on + strand, within HP15_3372 at 3539.438 kb on + strand, within HP15_3372 at 3539.580 kb on + strand, within HP15_3372 at 3539.674 kb on - strand at 3539.674 kb on - strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.692 kb on + strand at 3539.918 kb on - strand, within HP15_3373
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 3,537,182 - HP15_3370 0.26 -0.1 3,537,194 + HP15_3370 0.28 +0.0 3,537,310 + HP15_3370 0.38 +0.2 3,537,363 - HP15_3370 0.43 -0.2 3,537,398 + HP15_3370 0.46 +0.1 3,537,411 + HP15_3370 0.47 +0.0 3,537,419 - HP15_3370 0.48 +0.0 3,537,419 - HP15_3370 0.48 -0.7 3,537,465 + HP15_3370 0.52 +0.3 3,537,480 + HP15_3370 0.53 -0.3 3,537,551 - HP15_3370 0.59 -0.5 3,537,621 + HP15_3370 0.66 -0.3 3,537,651 + HP15_3370 0.68 -1.1 3,537,651 + HP15_3370 0.68 -0.0 3,537,678 - HP15_3370 0.71 -0.4 3,537,710 + HP15_3370 0.74 +0.9 3,537,734 - HP15_3370 0.76 +0.3 3,537,914 - +0.7 3,537,916 - +0.6 3,537,971 - +0.4 3,538,020 - +0.1 3,538,062 + +0.1 3,538,070 - +0.3 3,538,070 - -0.2 3,538,092 - -0.2 3,538,148 + +0.6 3,538,148 + +0.4 3,538,156 - +0.4 3,538,158 + +0.2 3,538,158 + -0.0 3,538,158 - -0.0 3,538,166 - -0.0 3,538,205 - -0.1 3,538,252 + HP15_3371 0.11 -0.1 3,538,320 - HP15_3371 0.20 +0.7 3,538,374 + HP15_3371 0.26 -0.0 3,538,455 + HP15_3371 0.36 +0.2 3,538,463 - HP15_3371 0.37 -0.3 3,538,579 + HP15_3371 0.52 -0.2 3,538,636 + HP15_3371 0.59 -0.1 3,538,636 + HP15_3371 0.59 +0.5 3,538,644 - HP15_3371 0.60 +0.1 3,538,666 + HP15_3371 0.63 -0.2 3,538,674 - HP15_3371 0.64 -0.7 3,538,692 + HP15_3371 0.66 +0.7 3,538,727 - HP15_3371 0.70 +0.6 3,538,759 - HP15_3371 0.74 +0.2 3,538,773 + HP15_3371 0.76 -0.3 3,538,781 - HP15_3371 0.77 +1.6 3,538,960 + +0.5 3,538,968 - +0.4 3,538,972 + -0.1 3,539,027 + +0.1 3,539,027 + +0.0 3,539,035 - -0.1 3,539,035 - +0.2 3,539,074 + +0.1 3,539,119 + HP15_3372 0.15 -3.0 3,539,127 - HP15_3372 0.16 +0.2 3,539,134 - HP15_3372 0.17 -0.2 3,539,317 + HP15_3372 0.43 -0.3 3,539,327 + HP15_3372 0.45 -0.2 3,539,383 + HP15_3372 0.53 -0.7 3,539,438 + HP15_3372 0.61 +0.1 3,539,580 + HP15_3372 0.81 -0.4 3,539,674 - +0.2 3,539,674 - +0.1 3,539,692 + -1.2 3,539,692 + +1.0 3,539,692 + -1.6 3,539,918 - HP15_3373 0.17 -0.3
Or see this region's nucleotide sequence