Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2600 and HP15_2601 are separated by 19 nucleotides HP15_2601 and HP15_2602 overlap by 1 nucleotides HP15_2602 and HP15_2603 are separated by 4 nucleotides
HP15_2600: HP15_2600 - isopropylmalate isomerase large subunit, at 2,748,984 to 2,749,379
_2600
HP15_2601: HP15_2601 - N-carbamoylsarcosine amidase, at 2,749,399 to 2,749,989
_2601
HP15_2602: HP15_2602 - hydantoin utilization protein B, at 2,749,989 to 2,751,860
_2602
HP15_2603: HP15_2603 - hydantoin utilization protein A, at 2,751,865 to 2,753,820
_2603
Position (kb)
2749
2750
2751
2752 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2749.114 kb on + strand, within HP15_2600 at 2749.122 kb on - strand, within HP15_2600 at 2749.192 kb on + strand, within HP15_2600 at 2749.430 kb on + strand at 2749.495 kb on + strand, within HP15_2601 at 2749.576 kb on - strand, within HP15_2601 at 2749.638 kb on - strand, within HP15_2601 at 2749.701 kb on + strand, within HP15_2601 at 2749.898 kb on - strand, within HP15_2601 at 2749.997 kb on + strand at 2749.997 kb on + strand at 2749.997 kb on + strand at 2750.005 kb on - strand at 2750.007 kb on + strand at 2750.031 kb on + strand at 2750.084 kb on + strand at 2750.086 kb on + strand at 2750.091 kb on - strand at 2750.094 kb on - strand at 2750.356 kb on - strand, within HP15_2602 at 2750.370 kb on - strand, within HP15_2602 at 2750.419 kb on + strand, within HP15_2602 at 2750.610 kb on + strand, within HP15_2602 at 2750.652 kb on + strand, within HP15_2602 at 2750.819 kb on + strand, within HP15_2602 at 2750.864 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.868 kb on + strand, within HP15_2602 at 2750.871 kb on - strand, within HP15_2602 at 2750.918 kb on + strand, within HP15_2602 at 2751.008 kb on - strand, within HP15_2602 at 2751.022 kb on - strand, within HP15_2602 at 2751.076 kb on + strand, within HP15_2602 at 2751.183 kb on + strand, within HP15_2602 at 2751.183 kb on + strand, within HP15_2602 at 2751.207 kb on + strand, within HP15_2602 at 2751.207 kb on + strand, within HP15_2602 at 2751.244 kb on + strand, within HP15_2602 at 2751.262 kb on - strand, within HP15_2602 at 2751.435 kb on + strand, within HP15_2602 at 2751.443 kb on - strand, within HP15_2602 at 2751.484 kb on + strand, within HP15_2602 at 2751.510 kb on - strand, within HP15_2602 at 2751.521 kb on + strand, within HP15_2602 at 2751.529 kb on - strand, within HP15_2602 at 2751.529 kb on - strand, within HP15_2602 at 2751.569 kb on - strand, within HP15_2602 at 2751.712 kb on - strand at 2751.712 kb on - strand at 2751.794 kb on - strand at 2751.876 kb on - strand at 2751.986 kb on + strand at 2752.009 kb on - strand at 2752.009 kb on - strand at 2752.038 kb on + strand at 2752.038 kb on + strand at 2752.233 kb on + strand, within HP15_2603 at 2752.425 kb on + strand, within HP15_2603 at 2752.446 kb on + strand, within HP15_2603 at 2752.567 kb on + strand, within HP15_2603 at 2752.575 kb on - strand, within HP15_2603 at 2752.613 kb on + strand, within HP15_2603 at 2752.631 kb on - strand, within HP15_2603 at 2752.654 kb on - strand, within HP15_2603 at 2752.709 kb on + strand, within HP15_2603 at 2752.711 kb on - strand, within HP15_2603 at 2752.717 kb on - strand, within HP15_2603 at 2752.744 kb on + strand, within HP15_2603 at 2752.809 kb on - strand, within HP15_2603 at 2752.826 kb on + strand, within HP15_2603
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,749,114 + HP15_2600 0.33 +0.2 2,749,122 - HP15_2600 0.35 +0.3 2,749,192 + HP15_2600 0.53 -0.6 2,749,430 + +0.2 2,749,495 + HP15_2601 0.16 +0.3 2,749,576 - HP15_2601 0.30 -0.5 2,749,638 - HP15_2601 0.40 -0.6 2,749,701 + HP15_2601 0.51 -0.7 2,749,898 - HP15_2601 0.84 -0.0 2,749,997 + +0.1 2,749,997 + -0.5 2,749,997 + -0.7 2,750,005 - -0.3 2,750,007 + -0.6 2,750,031 + -0.5 2,750,084 + -0.1 2,750,086 + -0.4 2,750,091 - +0.7 2,750,094 - -0.6 2,750,356 - HP15_2602 0.20 -0.0 2,750,370 - HP15_2602 0.20 -0.5 2,750,419 + HP15_2602 0.23 +0.3 2,750,610 + HP15_2602 0.33 +0.0 2,750,652 + HP15_2602 0.35 -0.3 2,750,819 + HP15_2602 0.44 +0.7 2,750,864 + HP15_2602 0.47 -0.7 2,750,868 + HP15_2602 0.47 +0.4 2,750,868 + HP15_2602 0.47 -0.2 2,750,868 + HP15_2602 0.47 +0.2 2,750,871 - HP15_2602 0.47 -0.2 2,750,918 + HP15_2602 0.50 +0.1 2,751,008 - HP15_2602 0.54 +0.3 2,751,022 - HP15_2602 0.55 -0.4 2,751,076 + HP15_2602 0.58 -0.6 2,751,183 + HP15_2602 0.64 -0.8 2,751,183 + HP15_2602 0.64 +0.3 2,751,207 + HP15_2602 0.65 +0.3 2,751,207 + HP15_2602 0.65 +0.2 2,751,244 + HP15_2602 0.67 -0.2 2,751,262 - HP15_2602 0.68 -0.5 2,751,435 + HP15_2602 0.77 +0.8 2,751,443 - HP15_2602 0.78 -0.2 2,751,484 + HP15_2602 0.80 +0.2 2,751,510 - HP15_2602 0.81 +0.2 2,751,521 + HP15_2602 0.82 +1.5 2,751,529 - HP15_2602 0.82 -0.3 2,751,529 - HP15_2602 0.82 -1.1 2,751,569 - HP15_2602 0.84 +1.8 2,751,712 - +0.9 2,751,712 - -0.2 2,751,794 - -0.2 2,751,876 - -2.1 2,751,986 + +0.5 2,752,009 - +1.1 2,752,009 - -0.3 2,752,038 + -0.3 2,752,038 + +0.0 2,752,233 + HP15_2603 0.19 +0.5 2,752,425 + HP15_2603 0.29 -0.1 2,752,446 + HP15_2603 0.30 +1.3 2,752,567 + HP15_2603 0.36 -0.1 2,752,575 - HP15_2603 0.36 -1.0 2,752,613 + HP15_2603 0.38 -0.6 2,752,631 - HP15_2603 0.39 +0.2 2,752,654 - HP15_2603 0.40 -0.3 2,752,709 + HP15_2603 0.43 -0.0 2,752,711 - HP15_2603 0.43 -0.2 2,752,717 - HP15_2603 0.44 +0.0 2,752,744 + HP15_2603 0.45 -0.9 2,752,809 - HP15_2603 0.48 +0.2 2,752,826 + HP15_2603 0.49 -0.4
Or see this region's nucleotide sequence