Experiment: m.b. Chlorite 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02370 and PGA1_c02380 are separated by 32 nucleotides PGA1_c02380 and PGA1_c02390 are separated by 89 nucleotides PGA1_c02390 and PGA1_c02400 are separated by 79 nucleotides
PGA1_c02370: PGA1_c02370 - putative ribonuclease BN, at 214,041 to 215,150
_c02370
PGA1_c02380: PGA1_c02380 - hypothetical protein, at 215,183 to 216,454
_c02380
PGA1_c02390: PGA1_c02390 - transcriptional regulator, MerR family, at 216,544 to 216,948
_c02390
PGA1_c02400: PGA1_c02400 - putative major facilitator superfamily transporter, at 217,028 to 218,269
_c02400
Position (kb) 215
216
217 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 214.209 kb on + strand, within PGA1_c02370 at 214.218 kb on + strand, within PGA1_c02370 at 214.244 kb on + strand, within PGA1_c02370 at 214.253 kb on + strand, within PGA1_c02370 at 214.279 kb on - strand, within PGA1_c02370 at 214.279 kb on - strand, within PGA1_c02370 at 214.281 kb on + strand, within PGA1_c02370 at 214.289 kb on - strand, within PGA1_c02370 at 214.303 kb on - strand, within PGA1_c02370 at 214.355 kb on + strand, within PGA1_c02370 at 214.393 kb on - strand, within PGA1_c02370 at 214.431 kb on + strand, within PGA1_c02370 at 214.441 kb on + strand, within PGA1_c02370 at 214.441 kb on + strand, within PGA1_c02370 at 214.441 kb on + strand, within PGA1_c02370 at 214.449 kb on - strand, within PGA1_c02370 at 214.472 kb on - strand, within PGA1_c02370 at 214.490 kb on + strand, within PGA1_c02370 at 214.498 kb on - strand, within PGA1_c02370 at 214.498 kb on - strand, within PGA1_c02370 at 214.517 kb on + strand, within PGA1_c02370 at 214.517 kb on + strand, within PGA1_c02370 at 214.517 kb on + strand, within PGA1_c02370 at 214.525 kb on - strand, within PGA1_c02370 at 214.532 kb on + strand, within PGA1_c02370 at 214.617 kb on + strand, within PGA1_c02370 at 214.637 kb on + strand, within PGA1_c02370 at 214.725 kb on + strand, within PGA1_c02370 at 214.754 kb on + strand, within PGA1_c02370 at 214.759 kb on - strand, within PGA1_c02370 at 214.767 kb on - strand, within PGA1_c02370 at 214.782 kb on + strand, within PGA1_c02370 at 214.782 kb on + strand, within PGA1_c02370 at 214.790 kb on - strand, within PGA1_c02370 at 214.828 kb on - strand, within PGA1_c02370 at 214.848 kb on + strand, within PGA1_c02370 at 214.851 kb on - strand, within PGA1_c02370 at 214.856 kb on - strand, within PGA1_c02370 at 214.856 kb on - strand, within PGA1_c02370 at 214.856 kb on - strand, within PGA1_c02370 at 214.870 kb on + strand, within PGA1_c02370 at 214.889 kb on - strand, within PGA1_c02370 at 214.891 kb on - strand, within PGA1_c02370 at 214.894 kb on + strand, within PGA1_c02370 at 214.939 kb on + strand, within PGA1_c02370 at 214.960 kb on + strand, within PGA1_c02370 at 214.973 kb on + strand, within PGA1_c02370 at 214.973 kb on + strand, within PGA1_c02370 at 214.981 kb on - strand, within PGA1_c02370 at 214.984 kb on + strand, within PGA1_c02370 at 215.077 kb on - strand at 215.102 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.107 kb on + strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.115 kb on - strand at 215.159 kb on + strand at 215.159 kb on + strand at 215.159 kb on + strand at 215.159 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.164 kb on + strand at 215.167 kb on - strand at 215.167 kb on - strand at 215.172 kb on - strand at 215.174 kb on + strand at 215.230 kb on - strand at 215.307 kb on - strand at 215.355 kb on + strand, within PGA1_c02380 at 215.355 kb on + strand, within PGA1_c02380 at 215.373 kb on - strand, within PGA1_c02380 at 215.379 kb on - strand, within PGA1_c02380 at 215.447 kb on + strand, within PGA1_c02380 at 215.447 kb on + strand, within PGA1_c02380 at 215.447 kb on + strand, within PGA1_c02380 at 215.523 kb on - strand, within PGA1_c02380 at 215.523 kb on - strand, within PGA1_c02380 at 215.611 kb on - strand, within PGA1_c02380 at 215.681 kb on - strand, within PGA1_c02380 at 215.703 kb on + strand, within PGA1_c02380 at 215.703 kb on + strand, within PGA1_c02380 at 215.711 kb on - strand, within PGA1_c02380 at 215.752 kb on - strand, within PGA1_c02380 at 215.762 kb on - strand, within PGA1_c02380 at 215.811 kb on + strand, within PGA1_c02380 at 215.811 kb on + strand, within PGA1_c02380 at 215.811 kb on + strand, within PGA1_c02380 at 215.813 kb on - strand, within PGA1_c02380 at 215.906 kb on - strand, within PGA1_c02380 at 215.919 kb on + strand, within PGA1_c02380 at 215.947 kb on + strand, within PGA1_c02380 at 215.963 kb on + strand, within PGA1_c02380 at 215.990 kb on + strand, within PGA1_c02380 at 215.991 kb on + strand, within PGA1_c02380 at 215.998 kb on - strand, within PGA1_c02380 at 215.999 kb on - strand, within PGA1_c02380 at 216.002 kb on + strand, within PGA1_c02380 at 216.014 kb on + strand, within PGA1_c02380 at 216.014 kb on + strand, within PGA1_c02380 at 216.022 kb on - strand, within PGA1_c02380 at 216.022 kb on - strand, within PGA1_c02380 at 216.057 kb on + strand, within PGA1_c02380 at 216.075 kb on - strand, within PGA1_c02380 at 216.075 kb on - strand, within PGA1_c02380 at 216.090 kb on - strand, within PGA1_c02380 at 216.104 kb on + strand, within PGA1_c02380 at 216.152 kb on + strand, within PGA1_c02380 at 216.171 kb on + strand, within PGA1_c02380 at 216.171 kb on + strand, within PGA1_c02380 at 216.211 kb on + strand, within PGA1_c02380 at 216.316 kb on - strand, within PGA1_c02380 at 216.327 kb on - strand at 216.385 kb on + strand at 216.400 kb on + strand at 216.420 kb on + strand at 216.425 kb on - strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.450 kb on + strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.458 kb on - strand at 216.494 kb on + strand at 216.573 kb on - strand at 216.601 kb on + strand, within PGA1_c02390 at 216.610 kb on + strand, within PGA1_c02390 at 216.623 kb on - strand, within PGA1_c02390 at 216.623 kb on - strand, within PGA1_c02390 at 216.646 kb on + strand, within PGA1_c02390 at 216.665 kb on - strand, within PGA1_c02390 at 216.708 kb on - strand, within PGA1_c02390 at 216.779 kb on + strand, within PGA1_c02390 at 216.858 kb on - strand, within PGA1_c02390 at 216.879 kb on + strand, within PGA1_c02390 at 216.887 kb on - strand, within PGA1_c02390 at 216.924 kb on - strand at 216.926 kb on + strand at 216.934 kb on - strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.990 kb on + strand at 216.992 kb on + strand at 216.998 kb on - strand at 216.998 kb on - strand at 216.998 kb on - strand at 217.000 kb on - strand at 217.000 kb on - strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.039 kb on + strand at 217.047 kb on - strand at 217.047 kb on - strand at 217.047 kb on - strand at 217.234 kb on - strand, within PGA1_c02400 at 217.243 kb on + strand, within PGA1_c02400 at 217.306 kb on - strand, within PGA1_c02400 at 217.336 kb on - strand, within PGA1_c02400 at 217.404 kb on - strand, within PGA1_c02400 at 217.450 kb on + strand, within PGA1_c02400 at 217.450 kb on + strand, within PGA1_c02400
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.16 mM remove 214,209 + PGA1_c02370 0.15 -0.7 214,218 + PGA1_c02370 0.16 -0.4 214,244 + PGA1_c02370 0.18 -0.4 214,253 + PGA1_c02370 0.19 -0.2 214,279 - PGA1_c02370 0.21 -0.5 214,279 - PGA1_c02370 0.21 +0.1 214,281 + PGA1_c02370 0.22 -0.1 214,289 - PGA1_c02370 0.22 +0.6 214,303 - PGA1_c02370 0.24 -0.2 214,355 + PGA1_c02370 0.28 -0.6 214,393 - PGA1_c02370 0.32 -0.5 214,431 + PGA1_c02370 0.35 +0.6 214,441 + PGA1_c02370 0.36 -0.5 214,441 + PGA1_c02370 0.36 -0.7 214,441 + PGA1_c02370 0.36 -3.2 214,449 - PGA1_c02370 0.37 +0.5 214,472 - PGA1_c02370 0.39 +0.2 214,490 + PGA1_c02370 0.40 -1.0 214,498 - PGA1_c02370 0.41 -0.2 214,498 - PGA1_c02370 0.41 +0.4 214,517 + PGA1_c02370 0.43 -0.3 214,517 + PGA1_c02370 0.43 +0.7 214,517 + PGA1_c02370 0.43 -0.5 214,525 - PGA1_c02370 0.44 -0.4 214,532 + PGA1_c02370 0.44 -0.6 214,617 + PGA1_c02370 0.52 -0.5 214,637 + PGA1_c02370 0.54 +0.4 214,725 + PGA1_c02370 0.62 +0.9 214,754 + PGA1_c02370 0.64 +2.0 214,759 - PGA1_c02370 0.65 -0.8 214,767 - PGA1_c02370 0.65 +0.2 214,782 + PGA1_c02370 0.67 +0.6 214,782 + PGA1_c02370 0.67 -1.8 214,790 - PGA1_c02370 0.67 +0.2 214,828 - PGA1_c02370 0.71 +0.3 214,848 + PGA1_c02370 0.73 -0.5 214,851 - PGA1_c02370 0.73 +1.8 214,856 - PGA1_c02370 0.73 -0.7 214,856 - PGA1_c02370 0.73 -0.6 214,856 - PGA1_c02370 0.73 -0.4 214,870 + PGA1_c02370 0.75 +1.5 214,889 - PGA1_c02370 0.76 +0.4 214,891 - PGA1_c02370 0.77 -0.6 214,894 + PGA1_c02370 0.77 +0.2 214,939 + PGA1_c02370 0.81 +0.9 214,960 + PGA1_c02370 0.83 -0.3 214,973 + PGA1_c02370 0.84 +1.6 214,973 + PGA1_c02370 0.84 +0.4 214,981 - PGA1_c02370 0.85 -0.9 214,984 + PGA1_c02370 0.85 -0.5 215,077 - -0.1 215,102 + +0.2 215,107 + -0.5 215,107 + -0.1 215,107 + -1.1 215,107 + +1.5 215,107 + -0.1 215,107 + +0.3 215,107 + +0.0 215,107 + +0.1 215,107 + +1.1 215,107 + -0.7 215,107 + +0.7 215,107 + -1.2 215,107 + +0.8 215,115 - -1.1 215,115 - -0.1 215,115 - +0.2 215,115 - -0.2 215,115 - +0.1 215,115 - -0.9 215,159 + -1.0 215,159 + +2.0 215,159 + +0.2 215,159 + +0.7 215,164 + +0.3 215,164 + +0.2 215,164 + +0.0 215,164 + -0.2 215,164 + +1.4 215,167 - -1.3 215,167 - -0.7 215,172 - -1.4 215,174 + +0.7 215,230 - +0.2 215,307 - +0.2 215,355 + PGA1_c02380 0.14 -0.6 215,355 + PGA1_c02380 0.14 +0.6 215,373 - PGA1_c02380 0.15 +1.2 215,379 - PGA1_c02380 0.15 +0.5 215,447 + PGA1_c02380 0.21 +0.2 215,447 + PGA1_c02380 0.21 +0.9 215,447 + PGA1_c02380 0.21 +1.0 215,523 - PGA1_c02380 0.27 -1.5 215,523 - PGA1_c02380 0.27 -1.3 215,611 - PGA1_c02380 0.34 -2.1 215,681 - PGA1_c02380 0.39 +0.8 215,703 + PGA1_c02380 0.41 +0.1 215,703 + PGA1_c02380 0.41 +0.8 215,711 - PGA1_c02380 0.42 -1.7 215,752 - PGA1_c02380 0.45 +0.1 215,762 - PGA1_c02380 0.46 +1.1 215,811 + PGA1_c02380 0.49 +0.1 215,811 + PGA1_c02380 0.49 +1.2 215,811 + PGA1_c02380 0.49 +0.2 215,813 - PGA1_c02380 0.50 -1.4 215,906 - PGA1_c02380 0.57 +0.9 215,919 + PGA1_c02380 0.58 +0.1 215,947 + PGA1_c02380 0.60 +0.2 215,963 + PGA1_c02380 0.61 -0.3 215,990 + PGA1_c02380 0.63 +0.1 215,991 + PGA1_c02380 0.64 +0.5 215,998 - PGA1_c02380 0.64 +0.6 215,999 - PGA1_c02380 0.64 -0.3 216,002 + PGA1_c02380 0.64 +0.6 216,014 + PGA1_c02380 0.65 +0.4 216,014 + PGA1_c02380 0.65 +0.9 216,022 - PGA1_c02380 0.66 +1.1 216,022 - PGA1_c02380 0.66 +0.6 216,057 + PGA1_c02380 0.69 -0.1 216,075 - PGA1_c02380 0.70 -0.1 216,075 - PGA1_c02380 0.70 +0.4 216,090 - PGA1_c02380 0.71 +1.2 216,104 + PGA1_c02380 0.72 -1.5 216,152 + PGA1_c02380 0.76 +0.9 216,171 + PGA1_c02380 0.78 +0.2 216,171 + PGA1_c02380 0.78 +0.8 216,211 + PGA1_c02380 0.81 +0.1 216,316 - PGA1_c02380 0.89 +0.9 216,327 - +0.2 216,385 + +1.9 216,400 + -0.9 216,420 + -1.0 216,425 - -1.6 216,450 + +0.3 216,450 + -0.1 216,450 + +0.2 216,450 + -0.4 216,450 + +0.6 216,450 + -0.3 216,450 + +0.3 216,458 - -0.7 216,458 - +0.1 216,458 - +0.0 216,458 - -0.2 216,494 + -0.8 216,573 - -2.8 216,601 + PGA1_c02390 0.14 +0.8 216,610 + PGA1_c02390 0.16 -0.7 216,623 - PGA1_c02390 0.20 +1.2 216,623 - PGA1_c02390 0.20 -0.6 216,646 + PGA1_c02390 0.25 +0.2 216,665 - PGA1_c02390 0.30 -0.1 216,708 - PGA1_c02390 0.40 +0.1 216,779 + PGA1_c02390 0.58 -1.3 216,858 - PGA1_c02390 0.78 -0.3 216,879 + PGA1_c02390 0.83 +1.0 216,887 - PGA1_c02390 0.85 +0.4 216,924 - +0.2 216,926 + -0.6 216,934 - +1.5 216,990 + -0.1 216,990 + -0.4 216,990 + +0.4 216,990 + +0.7 216,990 + +0.3 216,990 + +0.4 216,990 + +0.0 216,990 + -1.1 216,992 + +0.5 216,998 - +1.3 216,998 - -0.4 216,998 - -0.7 217,000 - -1.1 217,000 - -0.5 217,039 + +0.9 217,039 + +0.7 217,039 + -0.3 217,047 - +0.7 217,047 - -0.6 217,047 - +1.8 217,234 - PGA1_c02400 0.17 -0.1 217,243 + PGA1_c02400 0.17 +0.5 217,306 - PGA1_c02400 0.22 -1.0 217,336 - PGA1_c02400 0.25 +0.1 217,404 - PGA1_c02400 0.30 -3.1 217,450 + PGA1_c02400 0.34 -2.0 217,450 + PGA1_c02400 0.34 +0.4
Or see this region's nucleotide sequence