Experiment: Pyruvate-Sulfite (60-20 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lytR and lytS are separated by 125 nucleotides lytS and DVU0598 are separated by 203 nucleotides
DVU0596: lytR - DNA-binding response regulator LytR (TIGR), at 664,472 to 665,245
lytR
DVU0597: lytS - regulatory protein LytS (TIGR), at 665,371 to 667,086
lytS
DVU0598: DVU0598 - carbon starvation protein A, putative (TIGR), at 667,290 to 668,711
DVU0598
Position (kb) 665
666
667
668 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 664.423 kb on + strand at 664.425 kb on + strand at 664.581 kb on + strand, within lytR at 664.662 kb on + strand, within lytR at 664.664 kb on + strand, within lytR at 664.681 kb on + strand, within lytR at 664.855 kb on + strand, within lytR at 664.900 kb on - strand, within lytR at 665.036 kb on + strand, within lytR at 665.044 kb on - strand, within lytR at 665.051 kb on - strand, within lytR at 665.051 kb on - strand, within lytR at 665.085 kb on - strand, within lytR at 665.107 kb on + strand, within lytR at 665.120 kb on - strand, within lytR at 665.538 kb on + strand at 665.642 kb on + strand, within lytS at 665.675 kb on + strand, within lytS at 665.676 kb on + strand, within lytS at 665.720 kb on - strand, within lytS at 665.767 kb on - strand, within lytS at 665.776 kb on + strand, within lytS at 665.776 kb on + strand, within lytS at 665.784 kb on - strand, within lytS at 665.784 kb on - strand, within lytS at 665.796 kb on + strand, within lytS at 665.838 kb on + strand, within lytS at 665.846 kb on - strand, within lytS at 665.925 kb on + strand, within lytS at 665.988 kb on + strand, within lytS at 666.033 kb on - strand, within lytS at 666.033 kb on - strand, within lytS at 666.035 kb on - strand, within lytS at 666.048 kb on + strand, within lytS at 666.056 kb on - strand, within lytS at 666.147 kb on + strand, within lytS at 666.147 kb on + strand, within lytS at 666.155 kb on - strand, within lytS at 666.155 kb on - strand, within lytS at 666.246 kb on + strand, within lytS at 666.259 kb on + strand, within lytS at 666.259 kb on + strand, within lytS at 666.288 kb on + strand, within lytS at 666.296 kb on - strand, within lytS at 666.331 kb on + strand, within lytS at 666.350 kb on + strand, within lytS at 666.447 kb on + strand, within lytS at 666.477 kb on - strand, within lytS at 666.527 kb on + strand, within lytS at 666.639 kb on - strand, within lytS at 666.715 kb on + strand, within lytS at 666.722 kb on + strand, within lytS at 666.762 kb on - strand, within lytS at 666.876 kb on - strand, within lytS at 666.876 kb on - strand, within lytS at 666.899 kb on - strand, within lytS at 666.903 kb on + strand, within lytS at 666.911 kb on - strand, within lytS at 666.932 kb on + strand at 667.089 kb on - strand at 667.355 kb on - strand at 667.411 kb on - strand at 667.531 kb on - strand, within DVU0598 at 667.541 kb on + strand, within DVU0598 at 667.559 kb on - strand, within DVU0598 at 667.663 kb on + strand, within DVU0598 at 667.685 kb on + strand, within DVU0598 at 667.719 kb on + strand, within DVU0598 at 667.743 kb on - strand, within DVU0598 at 667.941 kb on - strand, within DVU0598 at 667.958 kb on + strand, within DVU0598
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20 mM) minimal remove 664,423 + -0.6 664,425 + -1.5 664,581 + lytR DVU0596 0.14 -1.8 664,662 + lytR DVU0596 0.25 -0.3 664,664 + lytR DVU0596 0.25 +0.2 664,681 + lytR DVU0596 0.27 -0.9 664,855 + lytR DVU0596 0.49 +0.8 664,900 - lytR DVU0596 0.55 -1.1 665,036 + lytR DVU0596 0.73 -0.9 665,044 - lytR DVU0596 0.74 -1.1 665,051 - lytR DVU0596 0.75 +2.6 665,051 - lytR DVU0596 0.75 -2.1 665,085 - lytR DVU0596 0.79 -1.9 665,107 + lytR DVU0596 0.82 -1.4 665,120 - lytR DVU0596 0.84 -1.2 665,538 + -0.2 665,642 + lytS DVU0597 0.16 -0.8 665,675 + lytS DVU0597 0.18 -1.6 665,676 + lytS DVU0597 0.18 -0.6 665,720 - lytS DVU0597 0.20 -0.9 665,767 - lytS DVU0597 0.23 +1.0 665,776 + lytS DVU0597 0.24 -1.7 665,776 + lytS DVU0597 0.24 +0.6 665,784 - lytS DVU0597 0.24 -3.1 665,784 - lytS DVU0597 0.24 +0.2 665,796 + lytS DVU0597 0.25 -2.2 665,838 + lytS DVU0597 0.27 -3.4 665,846 - lytS DVU0597 0.28 -0.6 665,925 + lytS DVU0597 0.32 -2.3 665,988 + lytS DVU0597 0.36 +0.6 666,033 - lytS DVU0597 0.39 -1.2 666,033 - lytS DVU0597 0.39 -1.9 666,035 - lytS DVU0597 0.39 -1.0 666,048 + lytS DVU0597 0.39 -1.3 666,056 - lytS DVU0597 0.40 -0.6 666,147 + lytS DVU0597 0.45 +2.6 666,147 + lytS DVU0597 0.45 -1.1 666,155 - lytS DVU0597 0.46 -2.0 666,155 - lytS DVU0597 0.46 -0.5 666,246 + lytS DVU0597 0.51 -1.5 666,259 + lytS DVU0597 0.52 -1.4 666,259 + lytS DVU0597 0.52 -1.9 666,288 + lytS DVU0597 0.53 -0.7 666,296 - lytS DVU0597 0.54 -1.3 666,331 + lytS DVU0597 0.56 -2.0 666,350 + lytS DVU0597 0.57 -1.6 666,447 + lytS DVU0597 0.63 +0.9 666,477 - lytS DVU0597 0.64 -0.3 666,527 + lytS DVU0597 0.67 -0.5 666,639 - lytS DVU0597 0.74 -0.0 666,715 + lytS DVU0597 0.78 +1.6 666,722 + lytS DVU0597 0.79 -1.1 666,762 - lytS DVU0597 0.81 +1.2 666,876 - lytS DVU0597 0.88 -1.9 666,876 - lytS DVU0597 0.88 -1.6 666,899 - lytS DVU0597 0.89 -2.3 666,903 + lytS DVU0597 0.89 -1.5 666,911 - lytS DVU0597 0.90 -2.0 666,932 + +0.2 667,089 - +0.1 667,355 - -0.0 667,411 - -0.8 667,531 - DVU0598 0.17 +0.1 667,541 + DVU0598 0.18 -1.0 667,559 - DVU0598 0.19 +0.7 667,663 + DVU0598 0.26 -0.6 667,685 + DVU0598 0.28 +2.0 667,719 + DVU0598 0.30 -0.4 667,743 - DVU0598 0.32 -0.2 667,941 - DVU0598 0.46 -0.1 667,958 + DVU0598 0.47 -1.1
Or see this region's nucleotide sequence