Experiment: Pyruvate-Sulfite (60-20 mM) minimal
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0765 and DVU0766 are separated by 198 nucleotides DVU0766 and DVU0767 are separated by 120 nucleotides
DVU0765: DVU0765 - hydroxypyruvate reductase, putative (TIGR), at 855,564 to 856,928
DVU0765
DVU0766: DVU0766 - transporter, putative (TIGR), at 857,127 to 857,657
DVU0766
DVU0767: DVU0767 - aminotransferase, class V (TIGR), at 857,778 to 858,884
DVU0767
Position (kb) 857
858 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 856.154 kb on + strand, within DVU0765 at 856.202 kb on + strand, within DVU0765 at 856.270 kb on - strand, within DVU0765 at 856.328 kb on + strand, within DVU0765 at 856.343 kb on + strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.510 kb on - strand, within DVU0765 at 856.544 kb on + strand, within DVU0765 at 856.552 kb on - strand, within DVU0765 at 856.626 kb on - strand, within DVU0765 at 856.634 kb on - strand, within DVU0765 at 856.668 kb on - strand, within DVU0765 at 856.668 kb on - strand, within DVU0765 at 856.733 kb on + strand, within DVU0765 at 856.737 kb on + strand, within DVU0765 at 856.777 kb on + strand, within DVU0765 at 856.779 kb on + strand, within DVU0765 at 856.787 kb on - strand, within DVU0765 at 856.829 kb on - strand at 856.863 kb on - strand at 856.987 kb on - strand at 857.010 kb on + strand at 857.012 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.056 kb on - strand at 857.083 kb on + strand at 857.143 kb on + strand at 857.266 kb on - strand, within DVU0766 at 857.310 kb on + strand, within DVU0766 at 857.317 kb on - strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.393 kb on + strand, within DVU0766 at 857.400 kb on + strand, within DVU0766 at 857.401 kb on - strand, within DVU0766 at 857.445 kb on - strand, within DVU0766 at 857.450 kb on - strand, within DVU0766 at 857.520 kb on - strand, within DVU0766 at 857.534 kb on - strand, within DVU0766 at 857.556 kb on - strand, within DVU0766 at 857.596 kb on - strand, within DVU0766 at 857.601 kb on - strand, within DVU0766 at 857.606 kb on - strand at 857.621 kb on + strand at 857.637 kb on + strand at 857.669 kb on - strand at 857.690 kb on - strand at 857.829 kb on - strand at 857.966 kb on + strand, within DVU0767 at 857.967 kb on + strand, within DVU0767 at 857.974 kb on - strand, within DVU0767 at 858.095 kb on - strand, within DVU0767 at 858.274 kb on - strand, within DVU0767 at 858.376 kb on + strand, within DVU0767 at 858.384 kb on - strand, within DVU0767 at 858.431 kb on + strand, within DVU0767 at 858.476 kb on + strand, within DVU0767 at 858.481 kb on + strand, within DVU0767 at 858.492 kb on + strand, within DVU0767 at 858.494 kb on - strand, within DVU0767 at 858.521 kb on - strand, within DVU0767 at 858.548 kb on - strand, within DVU0767 at 858.562 kb on + strand, within DVU0767 at 858.570 kb on - strand, within DVU0767 at 858.630 kb on - strand, within DVU0767
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20 mM) minimal remove 856,154 + DVU0765 0.43 -0.2 856,202 + DVU0765 0.47 -0.2 856,270 - DVU0765 0.52 -1.7 856,328 + DVU0765 0.56 +0.7 856,343 + DVU0765 0.57 -0.7 856,510 - DVU0765 0.69 +1.5 856,510 - DVU0765 0.69 +0.3 856,510 - DVU0765 0.69 -1.4 856,544 + DVU0765 0.72 -0.0 856,552 - DVU0765 0.72 -0.1 856,626 - DVU0765 0.78 -0.4 856,634 - DVU0765 0.78 -0.5 856,668 - DVU0765 0.81 +0.1 856,668 - DVU0765 0.81 +0.2 856,733 + DVU0765 0.86 +0.4 856,737 + DVU0765 0.86 -0.6 856,777 + DVU0765 0.89 +0.1 856,779 + DVU0765 0.89 -1.7 856,787 - DVU0765 0.90 +1.2 856,829 - -1.0 856,863 - -0.5 856,987 - -0.8 857,010 + -0.4 857,012 - -0.5 857,056 - -3.0 857,056 - -0.4 857,056 - +0.1 857,083 + +1.7 857,143 + -3.7 857,266 - DVU0766 0.26 -4.3 857,310 + DVU0766 0.34 -0.2 857,317 - DVU0766 0.36 -1.7 857,393 + DVU0766 0.50 -0.7 857,393 + DVU0766 0.50 -1.1 857,393 + DVU0766 0.50 -0.1 857,400 + DVU0766 0.51 -0.3 857,401 - DVU0766 0.52 -0.3 857,445 - DVU0766 0.60 -1.5 857,450 - DVU0766 0.61 -1.4 857,520 - DVU0766 0.74 -0.8 857,534 - DVU0766 0.77 -0.0 857,556 - DVU0766 0.81 -0.1 857,596 - DVU0766 0.88 -0.6 857,601 - DVU0766 0.89 -0.0 857,606 - -0.2 857,621 + -0.5 857,637 + -0.1 857,669 - -0.4 857,690 - -0.3 857,829 - +0.0 857,966 + DVU0767 0.17 +0.1 857,967 + DVU0767 0.17 +0.1 857,974 - DVU0767 0.18 +0.6 858,095 - DVU0767 0.29 -1.2 858,274 - DVU0767 0.45 -0.4 858,376 + DVU0767 0.54 +0.5 858,384 - DVU0767 0.55 -0.1 858,431 + DVU0767 0.59 -0.4 858,476 + DVU0767 0.63 -0.3 858,481 + DVU0767 0.64 -0.6 858,492 + DVU0767 0.64 +0.1 858,494 - DVU0767 0.65 -0.3 858,521 - DVU0767 0.67 -0.5 858,548 - DVU0767 0.70 +1.6 858,562 + DVU0767 0.71 +0.1 858,570 - DVU0767 0.72 +2.0 858,630 - DVU0767 0.77 -0.2
Or see this region's nucleotide sequence