Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.980.1

Experiment: Parafilmed volatile agar plate with no fungus

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.979.1 and Xcc-8004.980.1 are separated by 1 nucleotidesXcc-8004.980.1 and Xcc-8004.981.1 overlap by 37 nucleotidesXcc-8004.981.1 and Xcc-8004.982.1 are separated by 63 nucleotides Xcc-8004.979.1: Xcc-8004.979.1 - LysR family transcriptional regulator YeiE, at 930,793 to 931,707 Xcc-8004.979.1 Xcc-8004.980.1: Xcc-8004.980.1 - hypothetical protein, at 931,709 to 931,951 Xcc-8004.980.1 Xcc-8004.981.1: Xcc-8004.981.1 - FrmR: Negative transcriptional regulator of formaldehyde detoxification operon, at 931,915 to 932,190 Xcc-8004.981.1 Xcc-8004.982.1: Xcc-8004.982.1 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 932,254 to 933,363 Xcc-8004.982.1 Position (kb) 931 932Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 930.728 kb on + strandat 930.728 kb on + strandat 930.729 kb on - strandat 930.729 kb on - strandat 930.760 kb on + strandat 930.772 kb on + strandat 930.926 kb on + strand, within Xcc-8004.979.1at 930.926 kb on + strand, within Xcc-8004.979.1at 930.927 kb on - strand, within Xcc-8004.979.1at 930.927 kb on - strand, within Xcc-8004.979.1at 931.108 kb on + strand, within Xcc-8004.979.1at 931.108 kb on + strand, within Xcc-8004.979.1at 931.109 kb on - strand, within Xcc-8004.979.1at 931.109 kb on - strand, within Xcc-8004.979.1at 931.140 kb on + strand, within Xcc-8004.979.1at 931.699 kb on - strandat 931.753 kb on + strand, within Xcc-8004.980.1at 931.753 kb on + strand, within Xcc-8004.980.1at 931.753 kb on + strand, within Xcc-8004.980.1at 931.753 kb on + strand, within Xcc-8004.980.1at 931.753 kb on + strand, within Xcc-8004.980.1at 931.753 kb on + strand, within Xcc-8004.980.1at 931.753 kb on + strand, within Xcc-8004.980.1at 931.753 kb on + strand, within Xcc-8004.980.1at 931.754 kb on - strand, within Xcc-8004.980.1at 931.754 kb on - strand, within Xcc-8004.980.1at 931.754 kb on - strand, within Xcc-8004.980.1at 931.754 kb on - strand, within Xcc-8004.980.1at 931.754 kb on - strand, within Xcc-8004.980.1at 931.818 kb on + strand, within Xcc-8004.980.1at 931.818 kb on + strand, within Xcc-8004.980.1at 931.819 kb on - strand, within Xcc-8004.980.1at 931.819 kb on - strand, within Xcc-8004.980.1at 931.880 kb on + strand, within Xcc-8004.980.1at 931.880 kb on + strand, within Xcc-8004.980.1at 931.882 kb on + strand, within Xcc-8004.980.1at 932.007 kb on - strand, within Xcc-8004.981.1at 932.081 kb on + strand, within Xcc-8004.981.1at 932.082 kb on - strand, within Xcc-8004.981.1at 932.095 kb on - strand, within Xcc-8004.981.1at 932.180 kb on - strandat 932.180 kb on - strandat 932.180 kb on - strandat 932.415 kb on + strand, within Xcc-8004.982.1at 932.416 kb on - strand, within Xcc-8004.982.1at 932.515 kb on + strand, within Xcc-8004.982.1at 932.515 kb on + strand, within Xcc-8004.982.1at 932.515 kb on + strand, within Xcc-8004.982.1at 932.515 kb on + strand, within Xcc-8004.982.1at 932.516 kb on - strand, within Xcc-8004.982.1at 932.516 kb on - strand, within Xcc-8004.982.1at 932.516 kb on - strand, within Xcc-8004.982.1at 932.633 kb on - strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.656 kb on + strand, within Xcc-8004.982.1at 932.657 kb on - strand, within Xcc-8004.982.1at 932.657 kb on - strand, within Xcc-8004.982.1at 932.683 kb on + strand, within Xcc-8004.982.1at 932.683 kb on + strand, within Xcc-8004.982.1at 932.684 kb on - strand, within Xcc-8004.982.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with no fungus
remove
930,728 + +0.9
930,728 + +1.6
930,729 - -2.1
930,729 - -1.3
930,760 + +1.4
930,772 + -2.1
930,926 + Xcc-8004.979.1 0.15 +0.4
930,926 + Xcc-8004.979.1 0.15 +0.9
930,927 - Xcc-8004.979.1 0.15 -0.2
930,927 - Xcc-8004.979.1 0.15 +1.4
931,108 + Xcc-8004.979.1 0.34 -0.3
931,108 + Xcc-8004.979.1 0.34 -0.4
931,109 - Xcc-8004.979.1 0.35 +0.5
931,109 - Xcc-8004.979.1 0.35 +0.3
931,140 + Xcc-8004.979.1 0.38 +0.9
931,699 - +1.5
931,753 + Xcc-8004.980.1 0.18 +0.2
931,753 + Xcc-8004.980.1 0.18 -0.2
931,753 + Xcc-8004.980.1 0.18 +1.1
931,753 + Xcc-8004.980.1 0.18 -0.8
931,753 + Xcc-8004.980.1 0.18 -2.9
931,753 + Xcc-8004.980.1 0.18 -0.8
931,753 + Xcc-8004.980.1 0.18 -0.2
931,753 + Xcc-8004.980.1 0.18 -3.2
931,754 - Xcc-8004.980.1 0.19 -1.2
931,754 - Xcc-8004.980.1 0.19 +0.6
931,754 - Xcc-8004.980.1 0.19 -0.3
931,754 - Xcc-8004.980.1 0.19 +1.1
931,754 - Xcc-8004.980.1 0.19 +0.9
931,818 + Xcc-8004.980.1 0.45 +1.7
931,818 + Xcc-8004.980.1 0.45 +0.6
931,819 - Xcc-8004.980.1 0.45 -2.1
931,819 - Xcc-8004.980.1 0.45 -0.1
931,880 + Xcc-8004.980.1 0.70 -0.9
931,880 + Xcc-8004.980.1 0.70 -0.7
931,882 + Xcc-8004.980.1 0.71 +0.2
932,007 - Xcc-8004.981.1 0.33 +1.6
932,081 + Xcc-8004.981.1 0.60 -0.1
932,082 - Xcc-8004.981.1 0.61 +1.2
932,095 - Xcc-8004.981.1 0.65 +1.4
932,180 - -1.5
932,180 - -0.8
932,180 - -0.4
932,415 + Xcc-8004.982.1 0.15 +0.5
932,416 - Xcc-8004.982.1 0.15 +1.1
932,515 + Xcc-8004.982.1 0.24 -1.0
932,515 + Xcc-8004.982.1 0.24 +0.8
932,515 + Xcc-8004.982.1 0.24 +0.0
932,515 + Xcc-8004.982.1 0.24 -0.2
932,516 - Xcc-8004.982.1 0.24 +0.6
932,516 - Xcc-8004.982.1 0.24 +0.5
932,516 - Xcc-8004.982.1 0.24 +1.3
932,633 - Xcc-8004.982.1 0.34 -0.3
932,656 + Xcc-8004.982.1 0.36 -0.5
932,656 + Xcc-8004.982.1 0.36 +0.4
932,656 + Xcc-8004.982.1 0.36 +0.4
932,656 + Xcc-8004.982.1 0.36 +2.0
932,656 + Xcc-8004.982.1 0.36 +1.1
932,656 + Xcc-8004.982.1 0.36 -0.3
932,656 + Xcc-8004.982.1 0.36 -0.1
932,656 + Xcc-8004.982.1 0.36 +1.6
932,657 - Xcc-8004.982.1 0.36 -2.3
932,657 - Xcc-8004.982.1 0.36 +0.1
932,683 + Xcc-8004.982.1 0.39 +0.0
932,683 + Xcc-8004.982.1 0.39 +0.3
932,684 - Xcc-8004.982.1 0.39 -0.2

Or see this region's nucleotide sequence